Wall clock time and date at job start Tue Mar 31 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.99570 * 2 1 4 4 C 1.38212 * 119.99606 * 180.02562 * 3 2 1 5 5 C 1.38257 * 120.00477 * 359.76760 * 4 3 2 6 6 C 1.38222 * 119.99410 * 0.46325 * 5 4 3 7 7 C 1.50695 * 119.99510 * 179.78924 * 6 5 4 8 8 H 1.09005 * 109.87318 * 160.74461 * 7 6 5 9 9 C 1.54325 * 109.88529 * 281.91463 * 7 6 5 10 10 C 1.55151 * 102.94207 * 141.61212 * 9 7 6 11 11 C 1.55133 * 101.49054 * 324.33589 * 10 9 7 12 12 N 1.47018 * 109.88650 * 39.72625 * 7 6 5 13 13 S 1.65606 * 125.64672 * 61.60302 * 12 7 6 14 14 O 1.42094 * 104.27817 * 333.93010 * 13 12 7 15 15 O 1.42106 * 104.27580 * 206.07242 * 13 12 7 16 16 C 1.81396 * 104.45103 * 90.00226 * 13 12 7 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.38209 * 120.00685 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46860 * 270.02094 * 1 2 3 28 28 H 1.08994 * 109.47223 * 30.02044 * 1 2 3 29 29 H 1.09002 * 109.46857 * 150.02589 * 1 2 3 30 30 H 1.07993 * 120.00195 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.99969 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.00416 * 180.25568 * 5 4 3 33 33 H 1.08998 * 110.72403 * 259.98087 * 9 7 6 34 34 H 1.09003 * 110.71528 * 23.24888 * 9 7 6 35 35 H 1.09003 * 111.00496 * 82.57693 * 10 9 7 36 36 H 1.09000 * 111.00576 * 206.38702 * 10 9 7 37 37 H 1.09005 * 110.49404 * 278.45907 * 11 10 9 38 38 H 1.08994 * 110.34456 * 156.06021 * 11 10 9 39 39 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 40 40 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 41 41 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 42 42 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 43 43 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 44 44 H 1.08006 * 119.99489 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2718 0.0002 0.0038 6 6 3.5807 -1.1968 -0.0010 7 6 4.3343 -2.5018 -0.0011 8 1 3.6803 -3.3074 0.3330 9 6 4.8611 -2.8037 -1.4199 10 6 6.2586 -3.4202 -1.1478 11 6 6.7234 -2.6003 0.0844 12 7 5.5021 -2.4050 0.8867 13 16 5.4540 -2.1170 2.5168 14 8 4.2388 -1.4067 2.7115 15 8 6.7087 -1.5146 2.8034 16 6 5.3541 -3.7664 3.2651 17 6 5.3038 -3.6332 4.7884 18 6 5.2202 -5.0034 5.4101 19 1 5.2049 -5.8815 4.7815 20 6 5.1643 -5.1361 6.7813 21 7 5.1834 -4.0668 7.5467 22 14 5.0613 -6.8346 7.5519 23 1 6.4318 -7.3463 7.8071 24 1 4.3169 -6.7522 8.8342 25 1 4.3534 -7.7557 6.6270 26 6 2.1982 -1.1968 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1204 2.1328 -0.0010 32 1 5.3517 0.0002 0.0075 33 1 4.2153 -3.5207 -1.9267 34 1 4.9509 -1.8859 -2.0012 35 1 6.1779 -4.4804 -0.9080 36 1 6.9266 -3.2631 -1.9947 37 1 7.1297 -1.6384 -0.2284 38 1 7.4658 -3.1597 0.6536 39 1 6.2307 -4.3483 2.9804 40 1 4.4537 -4.2706 2.9142 41 1 4.4274 -3.0511 5.0736 42 1 6.2045 -3.1291 5.1389 43 1 5.1437 -4.1602 8.5114 44 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111331727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:19 Heat of formation + Delta-G solvation = -79.081740 kcal Electronic energy + Delta-G solvation = -25839.047769 eV Core-core repulsion = 22267.851054 eV Total energy + Delta-G solvation = -3571.196715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83274 -38.86155 -38.15966 -36.99472 -35.93362 -33.69249 -33.15933 -32.57522 -31.85775 -28.89338 -27.72597 -27.56412 -24.26122 -23.44885 -22.96802 -22.32089 -21.45702 -19.69819 -19.02176 -18.29646 -17.81221 -17.20101 -16.93366 -16.60785 -16.50646 -15.86199 -15.66663 -15.22150 -14.85592 -14.63312 -14.49917 -14.37866 -14.13226 -13.90079 -13.76778 -13.54942 -13.27795 -13.15090 -13.00522 -12.95360 -12.92997 -12.81267 -12.61534 -12.46303 -12.29865 -12.14326 -12.03621 -11.91259 -11.78073 -11.72933 -11.49813 -11.18864 -10.67646 -10.05468 -9.61573 -9.37486 -8.28540 -6.43582 -0.76284 0.48604 0.54343 1.39284 1.41661 1.52884 1.75615 2.36357 2.83657 2.87284 3.04535 3.08485 3.67230 3.67676 3.82765 3.98739 4.00880 4.07072 4.11970 4.19604 4.26013 4.38315 4.55770 4.59648 4.63977 4.68940 4.69806 4.85957 4.88465 4.95918 5.01286 5.03755 5.06658 5.18254 5.20288 5.21789 5.23840 5.34631 5.39592 5.51403 5.59945 5.64774 5.72846 5.78118 6.02335 6.19749 6.69784 7.26981 8.83970 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.003822 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.404668 B = 7323.401339 C = 8121.841701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.134 4.134 4 C -0.131 4.131 5 C -0.131 4.131 6 C -0.091 4.091 7 C 0.181 3.819 8 H 0.092 0.908 9 C -0.108 4.108 10 C -0.118 4.118 11 C 0.105 3.895 12 N -1.005 6.005 13 S 2.622 3.378 14 O -0.976 6.976 15 O -0.997 6.997 16 C -0.589 4.589 17 C 0.023 3.977 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.256 1.256 26 C -0.121 4.121 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.268 0.732 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 2.840 -23.699 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.092 4.092 7 C 0.075 3.925 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.157 4.157 11 C -0.019 4.019 12 N -0.843 5.843 13 S 2.721 3.279 14 O -0.967 6.967 15 O -0.987 6.987 16 C -0.721 4.721 17 C -0.016 4.016 18 C -0.579 4.579 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.180 1.180 26 C -0.140 4.140 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.080 3.794 -23.042 23.706 hybrid contribution 0.185 -0.801 1.244 1.491 sum -3.895 2.993 -21.798 22.344 Atomic orbital electron populations 1.20815 0.89340 1.03910 1.02616 1.20257 0.97546 0.93036 0.98894 1.21279 0.94144 0.98443 1.01373 1.21354 0.95133 0.98224 1.00197 1.21000 0.99644 0.92932 1.01333 1.20275 0.94316 0.95382 0.99262 1.20534 0.85939 0.93617 0.92411 0.88988 1.22688 0.97276 1.02354 0.92354 1.22862 0.96211 0.99878 0.96723 1.22359 0.85683 1.00696 0.93184 1.58613 1.14167 1.88781 1.22778 1.04484 0.72955 0.77775 0.72728 1.93537 1.47603 1.70686 1.84850 1.93484 1.45541 1.75564 1.84146 1.30404 1.11978 1.22145 1.07544 1.18795 0.96055 0.98878 0.87886 1.21502 1.51593 0.92548 0.92298 0.90556 1.26155 0.94232 1.01810 0.98023 1.70111 1.50687 1.31336 1.05314 0.85280 0.78704 0.78303 0.77784 1.19455 1.20718 1.17997 1.21095 0.93290 0.98693 1.00911 0.91449 0.90186 0.90277 0.84409 0.85051 0.87134 0.87496 0.90261 0.89239 0.87491 0.91311 0.90317 0.84331 0.84267 0.97742 0.97918 0.92324 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.24 0.71 -1.23 16 2 C -0.10 -2.37 5.88 -19.86 -0.12 -2.49 16 3 C -0.13 -3.32 9.70 22.27 0.22 -3.10 16 4 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 5 C -0.13 -3.78 8.77 22.27 0.20 -3.58 16 6 C -0.09 -2.47 3.30 -19.87 -0.07 -2.53 16 7 C 0.18 4.12 3.25 44.59 0.15 4.26 16 8 H 0.09 1.90 8.01 -2.38 -0.02 1.88 16 9 C -0.11 -1.55 6.45 31.78 0.21 -1.35 16 10 C -0.12 -1.51 7.10 32.06 0.23 -1.28 16 11 C 0.11 2.19 6.90 86.93 0.60 2.79 16 12 N -1.01 -27.55 2.59 -487.72 -1.26 -28.81 16 13 S 2.62 101.52 5.61 -56.49 -0.32 101.20 16 14 O -0.98 -43.21 15.81 -127.65 -2.02 -45.23 16 15 O -1.00 -44.65 17.60 -127.65 -2.25 -46.89 16 16 C -0.59 -23.56 6.12 71.98 0.44 -23.12 16 17 C 0.02 1.24 4.98 29.85 0.15 1.39 16 18 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 19 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 21 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 22 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 C -0.12 -3.11 9.33 22.26 0.21 -2.91 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 29 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.11 3.16 7.72 -2.91 -0.02 3.13 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.15 7.77 -2.39 -0.02 1.14 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 40 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.14 2.86 8.04 -2.91 -0.02 2.84 16 Total: -1.00 -79.40 373.46 1.27 -78.13 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.96 Total: 20.13 kcal Atomic # 6 Polarization: -70.41 SS G_CDS: 3.84 Total: -66.57 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -0.98 Total: -86.36 kcal Atomic # 8 Polarization: -87.86 SS G_CDS: -4.27 Total: -92.12 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 101.52 SS G_CDS: -0.32 Total: 101.20 kcal Total: -79.40 1.27 -78.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.947 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds