Wall clock time and date at job start Tue Mar 31 2020 13:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 119.99790 * 2 1 4 4 C 1.38212 * 119.99564 * 179.74027 * 3 2 1 5 5 C 1.38253 * 120.00135 * 0.53386 * 4 3 2 6 6 C 1.38207 * 120.00108 * 359.74536 * 5 4 3 7 7 C 1.38209 * 120.00025 * 180.27281 * 2 1 3 8 8 C 1.50694 * 120.00287 * 0.02562 * 7 2 1 9 9 C 1.53008 * 115.54733 * 279.88284 * 8 7 2 10 10 N 1.46496 * 109.46904 * 304.83352 * 9 8 7 11 11 S 1.65603 * 120.00110 * 164.18147 * 10 9 8 12 12 O 1.42101 * 104.28073 * 181.07394 * 11 10 9 13 13 O 1.42100 * 104.27571 * 308.93434 * 11 10 9 14 14 C 1.81398 * 104.44870 * 65.00108 * 11 10 9 15 15 C 1.52998 * 109.47417 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47163 * 180.02562 * 15 14 11 17 17 H 1.07993 * 119.99982 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99862 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46981 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47187 * 119.99629 * 20 18 16 23 23 H 1.48504 * 109.47157 * 240.00031 * 20 18 16 24 24 C 1.52998 * 117.50161 * 134.17185 * 8 7 2 25 25 C 1.52995 * 117.50137 * 65.54645 * 8 7 2 26 26 H 1.08997 * 109.47332 * 264.11970 * 1 2 3 27 27 H 1.09005 * 109.46881 * 144.11951 * 1 2 3 28 28 H 1.09007 * 109.47463 * 24.12239 * 1 2 3 29 29 H 1.07998 * 120.00016 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.99469 * 180.29436 * 4 3 2 31 31 H 1.07999 * 119.99768 * 179.76753 * 5 4 3 32 32 H 1.07997 * 120.00394 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47466 * 64.83488 * 9 8 7 34 34 H 1.09004 * 109.46741 * 184.83889 * 9 8 7 35 35 H 0.97002 * 120.00263 * 344.18529 * 10 9 8 36 36 H 1.09005 * 109.47053 * 300.00583 * 14 11 10 37 37 H 1.09005 * 109.47516 * 60.00093 * 14 11 10 38 38 H 1.09006 * 109.46852 * 299.99659 * 15 14 11 39 39 H 1.08996 * 109.47031 * 60.00022 * 15 14 11 40 40 H 0.97000 * 120.00013 * 179.97438 * 19 18 16 41 41 H 1.08993 * 117.49762 * 0.02562 * 24 8 7 42 42 H 1.09007 * 117.49985 * 145.02271 * 24 8 7 43 43 H 1.09000 * 117.50166 * 214.98150 * 25 8 7 44 44 H 1.09002 * 117.50180 * 0.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2716 0.0001 -0.0003 6 6 3.5806 -1.1968 -0.0061 7 6 2.1980 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0125 9 6 0.9090 -2.9618 1.3450 10 7 2.0104 -3.0239 2.3089 11 16 1.6876 -3.1060 3.9311 12 8 2.9698 -3.1256 4.5432 13 8 0.7815 -2.0361 4.1626 14 6 0.8549 -4.7031 4.1465 15 6 0.5003 -4.8985 5.6220 16 6 -0.1909 -6.2256 5.8010 17 1 -0.3607 -6.8655 4.9478 18 6 -0.6073 -6.6224 7.0541 19 7 -0.4010 -5.8430 8.0931 20 14 -1.4648 -8.2671 7.2760 21 1 -1.5752 -8.9491 5.9614 22 1 -0.6782 -9.1136 8.2087 23 1 -2.8231 -8.0460 7.8340 24 6 1.9108 -3.5818 -0.9911 25 6 0.6054 -2.8268 -1.2498 26 1 -0.3634 -0.1053 1.0222 27 1 -0.3633 -0.8327 -0.6023 28 1 -0.3634 0.9380 -0.4200 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1327 0.0102 31 1 5.3516 0.0001 0.0001 32 1 4.1206 -2.1321 -0.0102 33 1 0.1574 -2.2554 1.6972 34 1 0.4597 -3.9496 1.2426 35 1 2.9289 -3.0168 1.9970 36 1 -0.0564 -4.7213 3.5487 37 1 1.5180 -5.5053 3.8225 38 1 1.4115 -4.8802 6.2201 39 1 -0.1629 -4.0964 5.9456 40 1 -0.6943 -6.1221 8.9746 41 1 2.7626 -3.3483 -1.6297 42 1 1.8360 -4.6201 -0.6679 43 1 -0.3281 -3.3684 -1.0968 44 1 0.5985 -2.0967 -2.0592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111337641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:19 Heat of formation + Delta-G solvation = -63.704219 kcal Electronic energy + Delta-G solvation = -25296.699820 eV Core-core repulsion = 21726.169924 eV Total energy + Delta-G solvation = -3570.529896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02201 -38.38166 -38.08878 -37.00479 -35.88936 -35.12981 -33.55786 -33.12037 -31.50694 -27.83881 -27.58542 -27.40067 -24.05113 -23.62512 -23.23704 -22.23844 -20.49301 -20.22741 -19.06599 -18.30644 -17.78157 -17.07159 -16.99575 -16.52387 -16.36162 -16.14690 -15.72563 -15.38631 -15.23279 -14.92553 -14.57146 -14.46846 -14.15262 -13.92857 -13.70504 -13.50643 -13.19957 -13.10760 -13.00475 -12.94899 -12.92905 -12.76612 -12.74274 -12.26583 -12.24979 -12.09970 -12.02196 -11.81350 -11.73964 -11.28096 -11.08930 -10.90630 -10.65162 -10.27865 -9.66604 -9.43911 -8.25454 -6.39522 -0.67474 0.47093 0.51465 1.41828 1.42417 1.55735 1.84954 2.38630 2.79478 2.83834 2.90307 3.08196 3.26996 3.65202 3.72957 3.91268 3.98841 4.06963 4.12803 4.13507 4.17969 4.25599 4.46853 4.49430 4.64361 4.75309 4.79269 4.83063 4.85449 4.87095 4.95241 4.99218 5.04372 5.11245 5.25343 5.27735 5.28900 5.34195 5.38004 5.62638 5.65012 5.69222 5.79161 6.06281 6.12078 6.16836 6.74691 7.30823 8.87129 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.003082 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.382562 B = 9083.765148 C = 9545.393819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.136 4.136 4 C -0.130 4.130 5 C -0.138 4.138 6 C -0.122 4.122 7 C -0.056 4.056 8 C -0.109 4.109 9 C 0.146 3.854 10 N -1.104 6.104 11 S 2.617 3.383 12 O -1.002 7.002 13 O -0.998 6.998 14 C -0.585 4.585 15 C 0.018 3.982 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.156 4.156 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.421 0.579 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.267 0.733 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 8.192 -24.467 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.140 4.140 7 C -0.056 4.056 8 C -0.111 4.111 9 C 0.021 3.979 10 N -0.865 5.865 11 S 2.714 3.286 12 O -0.993 6.993 13 O -0.988 6.988 14 C -0.717 4.717 15 C -0.020 4.020 16 C -0.576 4.576 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.192 4.192 25 C -0.184 4.184 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.257 0.743 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.364 8.914 -23.605 25.606 hybrid contribution -0.024 -0.851 0.534 1.005 sum 4.339 8.063 -23.071 24.822 Atomic orbital electron populations 1.20959 0.90460 1.03973 1.02457 1.20054 0.97095 0.92786 0.99107 1.21324 0.94827 0.97985 1.01290 1.21425 0.94467 0.98964 0.99960 1.21409 1.00884 0.92537 1.00762 1.21259 0.93663 0.98941 1.00110 1.18988 0.93206 0.92702 1.00666 1.20066 1.05452 0.94436 0.91136 1.21049 0.87934 1.02162 0.86781 1.55198 1.15862 1.91829 1.23621 1.04519 0.73721 0.77427 0.72967 1.93495 1.41360 1.88417 1.75990 1.93494 1.67748 1.52903 1.84652 1.30321 1.14397 1.20599 1.06407 1.18838 0.96390 0.98481 0.88328 1.21552 1.38130 1.03339 0.94530 0.90371 1.26140 0.96752 1.01827 0.95665 1.70116 1.47913 1.39319 1.00153 0.85249 0.77786 0.78225 0.78885 1.17716 1.20510 1.20422 1.23236 0.98680 0.96885 1.00444 1.23157 0.96197 1.02792 0.96274 0.92134 0.89451 0.90730 0.84940 0.84505 0.84494 0.84819 0.90879 0.88606 0.74309 0.83652 0.83705 0.97729 0.97533 0.92434 0.88068 0.87046 0.86555 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 9.21 71.24 0.66 -1.54 16 2 C -0.09 -1.92 5.87 -19.87 -0.12 -2.03 16 3 C -0.14 -2.76 9.68 22.27 0.22 -2.54 16 4 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 5 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 6 C -0.12 -2.39 8.84 22.27 0.20 -2.19 16 7 C -0.06 -1.13 4.63 -19.87 -0.09 -1.23 16 8 C -0.11 -1.84 0.99 -52.93 -0.05 -1.89 16 9 C 0.15 3.02 6.02 86.38 0.52 3.54 16 10 N -1.10 -28.01 5.62 -187.49 -1.05 -29.06 16 11 S 2.62 94.98 5.46 -56.49 -0.31 94.67 16 12 O -1.00 -43.21 18.08 -127.65 -2.31 -45.52 16 13 O -1.00 -42.75 17.49 -127.65 -2.23 -44.99 16 14 C -0.58 -21.67 6.01 71.98 0.43 -21.24 16 15 C 0.02 0.97 4.98 29.85 0.15 1.12 16 16 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 19 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 20 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 21 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.16 -1.94 9.53 30.59 0.29 -1.65 16 25 C -0.15 -1.77 8.01 30.59 0.24 -1.52 16 26 H 0.06 1.28 7.84 -2.39 -0.02 1.26 16 27 H 0.09 1.29 5.41 -2.38 -0.01 1.28 16 28 H 0.07 1.11 8.05 -2.38 -0.02 1.09 16 29 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.13 2.15 7.92 -2.91 -0.02 2.13 16 33 H 0.07 1.70 7.09 -2.39 -0.02 1.68 16 34 H 0.10 1.49 8.09 -2.38 -0.02 1.47 16 35 H 0.42 9.46 8.03 -96.74 -0.78 8.69 16 36 H 0.15 4.54 8.14 -2.39 -0.02 4.52 16 37 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 38 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.10 1.19 8.00 -2.39 -0.02 1.17 16 42 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.18 7.94 -2.39 -0.02 1.17 16 Total: -1.00 -77.81 376.67 0.21 -77.60 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.22 Total: 23.98 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 3.59 Total: -64.95 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -0.77 Total: -85.81 kcal Atomic # 8 Polarization: -85.97 SS G_CDS: -4.54 Total: -90.51 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 94.98 SS G_CDS: -0.31 Total: 94.67 kcal Total: -77.81 0.21 -77.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111337641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.892 kcal (2) G-P(sol) polarization free energy of solvation -77.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds