Wall clock time and date at job start Tue Mar 31 2020 13:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38306 * 120.04525 * 2 1 4 4 C 1.38125 * 120.16431 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.84922 * 179.97438 * 4 3 2 6 6 C 1.38505 * 120.30285 * 0.27999 * 4 3 2 7 7 C 1.38607 * 119.56630 * 359.32360 * 6 4 3 8 8 C 1.38030 * 120.04684 * 179.97438 * 2 1 3 9 9 N 1.39915 * 120.84096 * 180.58840 * 7 6 4 10 10 S 1.65603 * 120.53508 * 166.67485 * 9 7 6 11 11 O 1.42105 * 104.27588 * 198.35351 * 10 9 7 12 12 O 1.42098 * 104.27930 * 326.21174 * 10 9 7 13 13 C 1.81397 * 104.44710 * 82.28356 * 10 9 7 14 14 C 1.53006 * 109.47296 * 180.02562 * 13 10 9 15 15 C 1.50699 * 109.47328 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99610 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99930 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99794 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47120 * 89.99872 * 19 17 15 21 21 H 1.48500 * 109.47285 * 210.00109 * 19 17 15 22 22 H 1.48498 * 109.47279 * 330.00023 * 19 17 15 23 23 C 1.46918 * 118.92847 * 346.70181 * 9 7 6 24 24 C 1.53441 * 107.79778 * 44.66301 * 23 9 7 25 25 C 1.50590 * 118.93212 * 179.84770 * 6 4 3 26 26 H 1.09000 * 109.46858 * 90.00299 * 1 2 3 27 27 H 1.09003 * 109.47061 * 209.99719 * 1 2 3 28 28 H 1.08989 * 109.47246 * 330.00209 * 1 2 3 29 29 H 1.07999 * 119.91735 * 0.03658 * 3 2 1 30 30 H 1.09000 * 109.46942 * 89.99848 * 5 4 3 31 31 H 1.09000 * 109.47181 * 330.00234 * 5 4 3 32 32 H 1.09007 * 109.47038 * 210.00235 * 5 4 3 33 33 H 1.08003 * 119.98176 * 359.95244 * 8 2 1 34 34 H 1.09000 * 109.47400 * 299.99688 * 13 10 9 35 35 H 1.09003 * 109.47092 * 60.00118 * 13 10 9 36 36 H 1.09000 * 109.46622 * 300.00141 * 14 13 10 37 37 H 1.08999 * 109.47308 * 59.99657 * 14 13 10 38 38 H 0.97001 * 119.99530 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.79994 * 164.23750 * 23 9 7 40 40 H 1.09002 * 109.79525 * 285.09431 * 23 9 7 41 41 H 1.08992 * 109.57146 * 56.63172 * 24 23 9 42 42 H 1.08999 * 109.57178 * 176.87996 * 24 23 9 43 43 H 1.08994 * 109.43635 * 38.75960 * 25 6 4 44 44 H 1.09003 * 108.93559 * 279.31525 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1972 0.0000 4 6 3.5807 1.2001 -0.0005 5 6 4.3281 2.5087 -0.0011 6 6 4.2821 0.0057 -0.0069 7 6 3.5889 -1.1945 0.0015 8 6 2.1981 -1.1948 0.0005 9 7 4.2704 -2.4164 0.0076 10 16 3.4686 -3.8253 0.3462 11 8 4.4995 -4.7416 0.6884 12 8 2.4802 -3.4469 1.2944 13 6 2.6955 -4.2951 -1.2261 14 6 1.9148 -5.5980 -1.0414 15 6 1.2720 -5.9880 -2.3474 16 1 1.4065 -5.3683 -3.2217 17 6 0.5122 -7.1358 -2.4262 18 7 0.3489 -7.8906 -1.3616 19 14 -0.2839 -7.6196 -4.0452 20 1 0.6478 -8.4806 -4.8172 21 1 -1.5394 -8.3657 -3.7761 22 1 -0.5931 -6.3972 -4.8296 23 6 5.7089 -2.4293 -0.2905 24 6 6.3602 -1.2805 0.4909 25 6 5.7874 0.0449 -0.0108 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6589 2.1322 0.0006 30 1 4.5086 2.8244 1.0264 31 1 3.7352 3.2655 -0.5148 32 1 5.2809 2.3827 -0.5154 33 1 1.6586 -2.1304 0.0017 34 1 2.0147 -3.5064 -1.5463 35 1 3.4676 -4.4379 -1.9822 36 1 2.5953 -6.3869 -0.7210 37 1 1.1428 -5.4549 -0.2853 38 1 -0.1859 -8.6979 -1.4170 39 1 6.1421 -3.3797 0.0211 40 1 5.8657 -2.2841 -1.3593 41 1 6.1440 -1.3929 1.5533 42 1 7.4387 -1.2974 0.3339 43 1 6.1309 0.8531 0.6348 44 1 6.1340 0.2248 -1.0285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111338560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:06 Heat of formation + Delta-G solvation = -65.038399 kcal Electronic energy + Delta-G solvation = -26041.924236 eV Core-core repulsion = 22471.336485 eV Total energy + Delta-G solvation = -3570.587750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40973 -37.20961 -36.71220 -35.62294 -34.57729 -33.95397 -32.08860 -31.24085 -30.74624 -27.76504 -26.66801 -25.68903 -24.75950 -23.02214 -21.89431 -21.13279 -19.67417 -18.55359 -17.62771 -16.69016 -16.53986 -16.12938 -15.61231 -15.33121 -15.02169 -14.57959 -14.43461 -13.90356 -13.80294 -13.55813 -13.42649 -13.38485 -13.09722 -12.81866 -12.58343 -12.54095 -12.33328 -12.02755 -11.82498 -11.77038 -11.66061 -11.57948 -11.39335 -11.11927 -11.06625 -11.02114 -10.82978 -10.51538 -10.48786 -10.37645 -10.17748 -9.73279 -9.22221 -8.53630 -8.37647 -7.84034 -6.15707 -4.21602 0.53174 1.37459 1.49094 2.76650 3.24469 3.30851 3.33715 3.69393 4.15551 4.33957 4.38654 4.41493 4.69571 4.76744 4.84125 4.89636 4.97789 5.15926 5.19478 5.28035 5.30913 5.39250 5.44260 5.47560 5.49874 5.57109 5.64163 5.68012 5.71873 5.73182 5.77365 5.78032 5.95304 6.02940 6.10651 6.24367 6.35391 6.40139 6.63460 6.65040 6.75903 7.14707 7.23575 7.28903 7.77237 8.12630 8.81605 9.43433 10.95291 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.004030 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.925661 B = 6946.278631 C = 7902.467955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 C -0.152 4.152 4 C -0.058 4.058 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.199 3.801 8 C -0.175 4.175 9 N -0.943 5.943 10 S 2.576 3.424 11 O -0.955 6.955 12 O -0.949 6.949 13 C -0.585 4.585 14 C 0.029 3.971 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.103 3.897 24 C -0.131 4.131 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.266 0.734 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 19.833 1.599 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.045 4.045 3 C -0.171 4.171 4 C -0.059 4.059 5 C -0.169 4.169 6 C -0.133 4.133 7 C 0.102 3.898 8 C -0.196 4.196 9 N -0.765 5.765 10 S 2.678 3.322 11 O -0.946 6.946 12 O -0.939 6.939 13 C -0.719 4.719 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.021 4.021 24 C -0.170 4.170 25 C -0.109 4.109 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.241 19.155 2.557 21.421 hybrid contribution -0.581 -0.304 -1.459 1.600 sum 8.661 18.851 1.098 20.775 Atomic orbital electron populations 1.20837 0.90821 1.03162 1.02633 1.19601 0.96080 0.92079 0.96777 1.20724 0.93237 0.97385 1.05792 1.19572 0.93534 0.94078 0.98689 1.20802 1.00020 0.93937 1.02187 1.19174 0.95363 0.90965 1.07784 1.17208 0.90497 0.85011 0.97103 1.21190 0.91695 1.00121 1.06612 1.56134 1.18107 1.20327 1.81922 1.06326 0.74630 0.72347 0.78946 1.93534 1.56451 1.61414 1.83167 1.93577 1.60497 1.80943 1.58874 1.30509 1.12109 1.11209 1.18070 1.18992 0.94915 0.87153 0.99931 1.20976 1.31534 1.08433 0.95052 0.91953 1.25061 0.96211 0.96186 0.96937 1.69955 1.39483 1.14731 1.28611 0.86458 0.78863 0.78707 0.83215 1.20428 1.20952 1.19703 1.21790 0.78407 1.01492 1.00418 1.21813 1.00104 0.94283 1.00779 1.20350 0.90992 0.97866 1.01683 0.90836 0.90791 0.91526 0.86189 0.91220 0.91583 0.91429 0.84454 0.85828 0.85863 0.94769 0.94713 0.92471 0.87507 0.90584 0.90967 0.89911 0.90428 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.01 36.01 0.36 -1.02 16 2 C -0.04 -0.62 5.88 -104.67 -0.62 -1.24 16 3 C -0.15 -1.83 9.34 -39.60 -0.37 -2.20 16 4 C -0.06 -0.67 5.88 -104.56 -0.62 -1.29 16 5 C -0.11 -0.90 9.19 36.01 0.33 -0.57 16 6 C -0.13 -1.66 5.76 -104.44 -0.60 -2.26 16 7 C 0.20 3.07 6.22 -83.72 -0.52 2.55 16 8 C -0.17 -2.84 7.98 -39.35 -0.31 -3.15 16 9 N -0.94 -14.63 3.20 -58.09 -0.19 -14.82 16 10 S 2.58 48.86 4.81 -107.50 -0.52 48.35 16 11 O -0.96 -19.92 16.39 -57.54 -0.94 -20.86 16 12 O -0.95 -20.24 15.05 -57.54 -0.87 -21.11 16 13 C -0.58 -11.50 5.92 37.16 0.22 -11.28 16 14 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 15 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.10 1.27 6.46 -3.59 -0.02 1.24 16 24 C -0.13 -1.33 6.11 -26.58 -0.16 -1.49 16 25 C -0.07 -0.70 4.66 -28.01 -0.13 -0.83 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.07 0.64 8.09 -51.94 -0.42 0.22 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.47 6.76 -51.93 -0.35 0.12 16 33 H 0.14 2.40 4.60 -52.48 -0.24 2.16 16 34 H 0.12 2.24 7.09 -51.92 -0.37 1.87 16 35 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 1.34 6.69 -51.93 -0.35 0.99 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.63 7.11 -51.93 -0.37 0.27 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -33.98 360.43 -11.06 -45.04 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.71 Total: 1.45 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: -2.99 Total: -34.01 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.55 Total: -40.35 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.81 Total: -41.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -0.52 Total: 48.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.98 -11.06 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111338560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.996 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds