Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38306 * 120.04525 * 2 1 4 4 C 1.38125 * 120.16431 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.84922 * 179.97438 * 4 3 2 6 6 C 1.38505 * 120.30285 * 0.27999 * 4 3 2 7 7 C 1.38607 * 119.56630 * 359.32360 * 6 4 3 8 8 C 1.38030 * 120.04684 * 179.97438 * 2 1 3 9 9 N 1.39915 * 120.84096 * 180.58840 * 7 6 4 10 10 S 1.65603 * 120.53508 * 166.67485 * 9 7 6 11 11 O 1.42105 * 104.27588 * 198.35351 * 10 9 7 12 12 O 1.42098 * 104.27930 * 326.21174 * 10 9 7 13 13 C 1.81397 * 104.44710 * 82.28356 * 10 9 7 14 14 C 1.53006 * 109.47296 * 180.02562 * 13 10 9 15 15 C 1.50699 * 109.47328 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99610 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99930 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99794 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47120 * 89.99872 * 19 17 15 21 21 H 1.48500 * 109.47285 * 210.00109 * 19 17 15 22 22 H 1.48498 * 109.47279 * 330.00023 * 19 17 15 23 23 C 1.46918 * 118.92847 * 346.70181 * 9 7 6 24 24 C 1.53441 * 107.79778 * 44.66301 * 23 9 7 25 25 C 1.50590 * 118.93212 * 179.84770 * 6 4 3 26 26 H 1.09000 * 109.46858 * 90.00299 * 1 2 3 27 27 H 1.09003 * 109.47061 * 209.99719 * 1 2 3 28 28 H 1.08989 * 109.47246 * 330.00209 * 1 2 3 29 29 H 1.07999 * 119.91735 * 0.03658 * 3 2 1 30 30 H 1.09000 * 109.46942 * 89.99848 * 5 4 3 31 31 H 1.09000 * 109.47181 * 330.00234 * 5 4 3 32 32 H 1.09007 * 109.47038 * 210.00235 * 5 4 3 33 33 H 1.08003 * 119.98176 * 359.95244 * 8 2 1 34 34 H 1.09000 * 109.47400 * 299.99688 * 13 10 9 35 35 H 1.09003 * 109.47092 * 60.00118 * 13 10 9 36 36 H 1.09000 * 109.46622 * 300.00141 * 14 13 10 37 37 H 1.08999 * 109.47308 * 59.99657 * 14 13 10 38 38 H 0.97001 * 119.99530 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.79994 * 164.23750 * 23 9 7 40 40 H 1.09002 * 109.79525 * 285.09431 * 23 9 7 41 41 H 1.08992 * 109.57146 * 56.63172 * 24 23 9 42 42 H 1.08999 * 109.57178 * 176.87996 * 24 23 9 43 43 H 1.08994 * 109.43635 * 38.75960 * 25 6 4 44 44 H 1.09003 * 108.93559 * 279.31525 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1972 0.0000 4 6 3.5807 1.2001 -0.0005 5 6 4.3281 2.5087 -0.0011 6 6 4.2821 0.0057 -0.0069 7 6 3.5889 -1.1945 0.0015 8 6 2.1981 -1.1948 0.0005 9 7 4.2704 -2.4164 0.0076 10 16 3.4686 -3.8253 0.3462 11 8 4.4995 -4.7416 0.6884 12 8 2.4802 -3.4469 1.2944 13 6 2.6955 -4.2951 -1.2261 14 6 1.9148 -5.5980 -1.0414 15 6 1.2720 -5.9880 -2.3474 16 1 1.4065 -5.3683 -3.2217 17 6 0.5122 -7.1358 -2.4262 18 7 0.3489 -7.8906 -1.3616 19 14 -0.2839 -7.6196 -4.0452 20 1 0.6478 -8.4806 -4.8172 21 1 -1.5394 -8.3657 -3.7761 22 1 -0.5931 -6.3972 -4.8296 23 6 5.7089 -2.4293 -0.2905 24 6 6.3602 -1.2805 0.4909 25 6 5.7874 0.0449 -0.0108 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6589 2.1322 0.0006 30 1 4.5086 2.8244 1.0264 31 1 3.7352 3.2655 -0.5148 32 1 5.2809 2.3827 -0.5154 33 1 1.6586 -2.1304 0.0017 34 1 2.0147 -3.5064 -1.5463 35 1 3.4676 -4.4379 -1.9822 36 1 2.5953 -6.3869 -0.7210 37 1 1.1428 -5.4549 -0.2853 38 1 -0.1859 -8.6979 -1.4170 39 1 6.1421 -3.3797 0.0211 40 1 5.8657 -2.2841 -1.3593 41 1 6.1440 -1.3929 1.5533 42 1 7.4387 -1.2974 0.3339 43 1 6.1309 0.8531 0.6348 44 1 6.1340 0.2248 -1.0285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111338560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = -85.995081 kcal Electronic energy + Delta-G solvation = -26042.832986 eV Core-core repulsion = 22471.336485 eV Total energy + Delta-G solvation = -3571.496500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39589 -38.61674 -37.90719 -37.24367 -35.99054 -35.51258 -33.24404 -32.98792 -31.70422 -28.62878 -27.76842 -27.47047 -25.74089 -24.13283 -23.53437 -22.32521 -20.71692 -19.85758 -19.15092 -18.40577 -17.83230 -17.33349 -17.08617 -16.59115 -16.41516 -16.27144 -15.50022 -15.20780 -14.83776 -14.70439 -14.51324 -14.35422 -14.28539 -13.98083 -13.85128 -13.81487 -13.48872 -13.42741 -13.21315 -13.08159 -12.98008 -12.92161 -12.87572 -12.52295 -12.38587 -12.30626 -12.17454 -11.91953 -11.84604 -11.67456 -11.45019 -11.34687 -10.93002 -10.68697 -9.34773 -8.90420 -8.30018 -6.44858 -0.99917 0.38123 0.46573 1.38797 1.40718 1.40905 1.52279 2.34888 2.53787 2.79831 2.94003 3.03344 3.35252 3.79192 3.83191 3.88609 3.96293 3.97055 4.05882 4.10590 4.29376 4.42596 4.48262 4.53958 4.60803 4.66069 4.68736 4.79532 4.81662 4.90098 4.93550 4.97505 5.01385 5.14343 5.15647 5.16375 5.20098 5.26045 5.37487 5.41260 5.62576 5.63761 5.72112 5.74119 5.99626 6.17095 6.67579 7.25554 8.82353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.004030 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.925661 B = 6946.278631 C = 7902.467955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.151 4.151 4 C -0.057 4.057 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.172 3.828 8 C -0.212 4.212 9 N -0.937 5.937 10 S 2.600 3.400 11 O -0.979 6.979 12 O -0.980 6.980 13 C -0.582 4.582 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.074 0.926 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.259 1.259 23 C 0.088 3.912 24 C -0.128 4.128 25 C -0.071 4.071 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.269 0.731 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.771 23.166 -0.149 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.060 4.060 3 C -0.170 4.170 4 C -0.057 4.057 5 C -0.167 4.167 6 C -0.137 4.137 7 C 0.076 3.924 8 C -0.233 4.233 9 N -0.762 5.762 10 S 2.700 3.300 11 O -0.969 6.969 12 O -0.970 6.970 13 C -0.715 4.715 14 C -0.014 4.014 15 C -0.580 4.580 16 H 0.092 0.908 17 C -0.200 4.200 18 N -0.572 5.572 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.182 1.182 23 C -0.035 4.035 24 C -0.167 4.167 25 C -0.108 4.108 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.772 22.488 0.802 24.948 hybrid contribution -1.015 -1.224 -0.864 1.809 sum 9.757 21.264 -0.062 23.396 Atomic orbital electron populations 1.20877 0.89919 1.03377 1.03275 1.19891 0.97057 0.92174 0.96916 1.21101 0.93904 0.97582 1.04427 1.20082 0.93650 0.95336 0.96664 1.20890 1.00477 0.91927 1.03395 1.19638 0.97354 0.90192 1.06527 1.17459 0.90391 0.85573 0.98957 1.21225 0.92620 1.00094 1.09391 1.55713 1.19194 1.19121 1.82186 1.05282 0.73883 0.72724 0.78062 1.93492 1.56965 1.63069 1.83400 1.93532 1.61876 1.81655 1.59953 1.30376 1.12513 1.08613 1.19974 1.18820 0.94389 0.89412 0.98812 1.21447 1.31667 1.08863 0.95984 0.90752 1.26114 0.96778 0.96125 1.00968 1.70100 1.40480 1.15374 1.31234 0.85292 0.77775 0.78779 0.78309 1.19387 1.20607 1.18244 1.22208 0.76421 1.02422 1.02471 1.21869 1.01978 0.93496 0.99331 1.20483 0.88555 0.98199 1.03514 0.89951 0.92786 0.89061 0.83341 0.89985 0.90103 0.89845 0.87147 0.84586 0.83702 0.97221 0.97444 0.92244 0.88281 0.88145 0.92614 0.86371 0.88050 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 10.01 71.24 0.71 -2.05 16 2 C -0.06 -1.65 5.88 -19.90 -0.12 -1.77 16 3 C -0.15 -3.29 9.34 22.26 0.21 -3.08 16 4 C -0.06 -1.13 5.88 -19.83 -0.12 -1.25 16 5 C -0.11 -1.25 9.19 71.24 0.65 -0.59 16 6 C -0.13 -3.12 5.76 -19.75 -0.11 -3.24 16 7 C 0.17 5.30 6.22 38.14 0.24 5.53 16 8 C -0.21 -7.13 7.98 22.42 0.18 -6.95 16 9 N -0.94 -29.33 3.20 -337.69 -1.08 -30.41 16 10 S 2.60 104.02 4.81 -56.49 -0.27 103.75 16 11 O -0.98 -42.76 16.39 -127.65 -2.09 -44.85 16 12 O -0.98 -44.96 15.05 -127.65 -1.92 -46.88 16 13 C -0.58 -23.96 5.92 71.98 0.43 -23.53 16 14 C 0.02 1.33 4.98 29.85 0.15 1.48 16 15 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 16 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 17 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 18 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 19 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 C 0.09 2.04 6.46 86.45 0.56 2.60 16 24 C -0.13 -2.24 6.11 30.69 0.19 -2.06 16 25 C -0.07 -1.11 4.66 29.77 0.14 -0.97 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 28 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.70 16 32 H 0.08 0.71 6.76 -2.38 -0.02 0.70 16 33 H 0.11 4.21 4.60 -2.91 -0.01 4.20 16 34 H 0.14 5.20 7.09 -2.39 -0.02 5.18 16 35 H 0.14 5.20 8.14 -2.39 -0.02 5.18 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 39 H 0.10 2.44 6.69 -2.39 -0.02 2.43 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.15 7.11 -2.39 -0.02 1.13 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -77.72 360.43 1.74 -75.98 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.99 Total: 19.41 kcal Atomic # 6 Polarization: -69.59 SS G_CDS: 3.80 Total: -65.79 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.79 Total: -87.23 kcal Atomic # 8 Polarization: -87.72 SS G_CDS: -4.01 Total: -91.73 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 104.02 SS G_CDS: -0.27 Total: 103.75 kcal Total: -77.72 1.74 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111338560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.013 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds