Wall clock time and date at job start Tue Mar 31 2020 13:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38313 * 120.04588 * 2 1 4 4 C 1.38122 * 120.16221 * 180.32573 * 3 2 1 5 5 C 1.38505 * 120.30292 * 359.43838 * 4 3 2 6 6 C 1.38607 * 119.56885 * 0.18307 * 5 4 3 7 7 C 1.38018 * 120.04434 * 179.74570 * 2 1 3 8 8 N 1.39913 * 120.84644 * 180.29303 * 6 5 4 9 9 S 1.65593 * 120.54306 * 166.53790 * 8 6 5 10 10 O 1.42101 * 104.28029 * 198.31928 * 9 8 6 11 11 O 1.42102 * 104.27760 * 326.17579 * 9 8 6 12 12 C 1.81405 * 104.45032 * 82.24686 * 9 8 6 13 13 C 1.52999 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.46821 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.46983 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99619 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00169 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00241 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47291 * 120.00058 * 19 17 15 22 22 H 1.48508 * 109.47294 * 239.99965 * 19 17 15 23 23 C 1.46924 * 118.91756 * 346.52171 * 8 6 5 24 24 C 1.53428 * 107.80113 * 44.65510 * 23 8 6 25 25 C 1.50601 * 118.93033 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47304 * 270.25708 * 1 2 3 27 27 H 1.09006 * 109.46937 * 30.25779 * 1 2 3 28 28 H 1.09000 * 109.47435 * 150.25514 * 1 2 3 29 29 H 1.07995 * 119.92017 * 0.07799 * 3 2 1 30 30 H 1.07992 * 119.85102 * 179.70541 * 4 3 2 31 31 H 1.08006 * 119.98425 * 0.05058 * 7 2 1 32 32 H 1.08997 * 109.46792 * 300.00345 * 12 9 8 33 33 H 1.08996 * 109.46677 * 60.00060 * 12 9 8 34 34 H 1.09006 * 109.47081 * 299.99518 * 13 12 9 35 35 H 1.08996 * 109.47576 * 60.00252 * 13 12 9 36 36 H 1.08997 * 109.46685 * 299.99720 * 14 13 12 37 37 H 1.08996 * 109.47110 * 59.99635 * 14 13 12 38 38 H 0.96998 * 119.99942 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.79764 * 285.07942 * 23 8 6 40 40 H 1.09001 * 109.84496 * 164.25766 * 23 8 6 41 41 H 1.09002 * 109.58097 * 176.99097 * 24 23 8 42 42 H 1.09004 * 109.57574 * 56.60998 * 24 23 8 43 43 H 1.08994 * 109.29952 * 279.82810 * 25 5 4 44 44 H 1.08998 * 109.29586 * 39.40943 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5807 1.2001 -0.0068 5 6 4.2820 0.0057 -0.0019 6 6 3.5888 -1.1945 0.0060 7 6 2.1980 -1.1947 0.0053 8 7 4.2702 -2.4165 0.0172 9 16 3.4678 -3.8242 0.3585 10 8 4.4980 -4.7397 0.7046 11 8 2.4782 -3.4431 1.3044 12 6 2.6967 -4.2984 -1.2136 13 6 1.9157 -5.6006 -1.0262 14 6 1.2658 -6.0007 -2.3523 15 6 0.4960 -7.2830 -2.1677 16 1 0.4729 -7.7646 -1.2013 17 6 -0.1789 -7.8414 -3.2324 18 7 -0.1512 -7.2547 -4.4091 19 14 -1.1325 -9.4312 -3.0037 20 1 -1.0071 -9.8854 -1.5955 21 1 -2.5642 -9.2000 -3.3231 22 1 -0.5849 -10.4719 -3.9107 23 6 5.7091 -2.4302 -0.2792 24 6 6.3593 -1.2788 0.4989 25 6 5.7875 0.0449 -0.0090 26 1 -0.3634 0.0046 1.0276 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6590 2.1322 0.0013 30 1 4.1163 2.1378 -0.0116 31 1 1.6584 -2.1303 0.0086 32 1 2.0165 -3.5104 -1.5367 33 1 3.4697 -4.4432 -1.9682 34 1 2.5956 -6.3888 -0.7028 35 1 1.1426 -5.4553 -0.2717 36 1 0.5860 -5.2126 -2.6761 37 1 2.0391 -6.1461 -3.1066 38 1 -0.6257 -7.6477 -5.1583 39 1 5.8672 -2.2889 -1.3483 40 1 6.1427 -3.3795 0.0355 41 1 7.4378 -1.2948 0.3417 42 1 6.1417 -1.3872 1.5614 43 1 6.1385 0.2229 -1.0254 44 1 6.1298 0.8532 0.6372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111351528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:03 Heat of formation + Delta-G solvation = -64.929955 kcal Electronic energy + Delta-G solvation = -25639.043310 eV Core-core repulsion = 22068.460263 eV Total energy + Delta-G solvation = -3570.583048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40065 -37.42780 -36.82102 -35.93762 -34.74586 -34.00012 -32.23822 -32.01015 -29.93395 -27.89053 -27.40511 -24.96338 -23.86264 -23.16376 -22.43097 -20.60830 -20.13109 -18.83428 -17.81436 -16.79387 -16.67738 -16.26476 -15.82370 -15.52390 -15.27514 -14.55501 -14.45767 -14.29707 -14.01875 -13.81223 -13.70561 -13.55492 -13.03506 -12.73234 -12.62022 -12.33167 -12.22148 -12.09995 -12.01780 -11.91853 -11.87349 -11.53214 -11.30593 -11.23281 -10.98843 -10.95979 -10.90425 -10.67644 -10.54494 -10.33097 -10.00675 -9.44097 -9.15911 -8.65906 -8.43574 -8.01249 -6.08080 -4.11418 0.20154 1.25930 1.35497 2.46658 3.27905 3.35575 3.40340 3.58105 3.86678 4.11021 4.22646 4.40497 4.57275 4.67787 4.71609 4.80974 4.91497 5.00261 5.07279 5.09853 5.23592 5.28384 5.32000 5.37647 5.45870 5.49928 5.58053 5.62934 5.63338 5.78912 5.81054 5.88530 5.95304 6.07022 6.18164 6.21247 6.37248 6.44718 6.48617 6.61396 6.80740 6.98797 7.53730 7.62620 7.89640 8.29388 8.94887 9.53583 11.03119 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003446 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.722745 B = 8122.825434 C = 9086.649748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.126 4.126 6 C 0.192 3.808 7 C -0.171 4.171 8 N -0.942 5.942 9 S 2.585 3.415 10 O -0.951 6.951 11 O -0.945 6.945 12 C -0.605 4.605 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.102 3.898 24 C -0.131 4.131 25 C -0.073 4.073 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 18.789 7.535 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.048 4.048 3 C -0.169 4.169 4 C -0.106 4.106 5 C -0.130 4.130 6 C 0.095 3.905 7 C -0.192 4.192 8 N -0.764 5.764 9 S 2.685 3.315 10 O -0.941 6.941 11 O -0.935 6.935 12 C -0.738 4.738 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.022 4.022 24 C -0.170 4.170 25 C -0.110 4.110 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.917 18.254 8.237 22.809 hybrid contribution -0.628 -0.710 -0.712 1.185 sum 10.289 17.544 7.525 21.686 Atomic orbital electron populations 1.20843 0.90722 1.03156 1.02755 1.19648 0.96195 0.92148 0.96843 1.20888 0.94023 0.97439 1.04509 1.20861 0.94025 0.96724 0.99031 1.19373 0.95565 0.91451 1.06619 1.17228 0.90485 0.85007 0.97779 1.21162 0.91618 1.00070 1.06363 1.56003 1.18176 1.20199 1.82033 1.06019 0.74649 0.72563 0.78290 1.93559 1.56218 1.61697 1.82667 1.93605 1.60604 1.80900 1.58365 1.30604 1.12767 1.10153 1.20233 1.21540 0.98328 0.90624 1.03983 1.19073 0.95485 0.96621 0.89571 1.21273 1.30950 1.07933 0.96304 0.92288 1.25017 0.96509 0.97633 0.95183 1.69968 1.43003 1.39576 1.00790 0.86501 0.79680 0.83302 0.78354 1.19582 1.20910 1.20918 1.21824 0.78087 1.01597 1.00656 1.21815 1.00238 0.94184 1.00735 1.20352 0.90823 0.97968 1.01905 0.90752 0.91375 0.90928 0.86013 0.85883 0.84639 0.85075 0.85032 0.91462 0.91433 0.95998 0.96037 0.92918 0.90399 0.87458 0.89771 0.90903 0.90550 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.05 -0.59 5.88 -104.68 -0.62 -1.20 16 3 C -0.15 -1.58 9.70 -39.60 -0.38 -1.96 16 4 C -0.09 -0.89 9.67 -39.53 -0.38 -1.27 16 5 C -0.13 -1.43 5.76 -104.44 -0.60 -2.03 16 6 C 0.19 2.59 6.22 -83.72 -0.52 2.07 16 7 C -0.17 -2.43 7.98 -39.35 -0.31 -2.75 16 8 N -0.94 -12.49 3.20 -58.09 -0.19 -12.67 16 9 S 2.59 40.74 4.81 -107.50 -0.52 40.22 16 10 O -0.95 -16.75 16.39 -57.54 -0.94 -17.69 16 11 O -0.94 -17.11 15.04 -57.54 -0.87 -17.98 16 12 C -0.61 -9.65 5.98 37.16 0.22 -9.42 16 13 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.10 1.07 6.46 -3.59 -0.02 1.04 16 24 C -0.13 -1.13 6.11 -26.58 -0.16 -1.29 16 25 C -0.07 -0.62 5.78 -28.00 -0.16 -0.78 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 2.02 4.60 -52.48 -0.24 1.78 16 32 H 0.13 1.92 7.09 -51.93 -0.37 1.56 16 33 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.12 6.70 -51.93 -0.35 0.78 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -34.16 364.09 -11.41 -45.57 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.83 Total: -0.14 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -3.27 Total: -33.57 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.55 Total: -38.35 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.81 Total: -35.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 40.74 SS G_CDS: -0.52 Total: 40.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.16 -11.41 -45.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111351528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.356 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds