Wall clock time and date at job start Tue Mar 31 2020 13:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38313 * 120.04588 * 2 1 4 4 C 1.38122 * 120.16221 * 180.32573 * 3 2 1 5 5 C 1.38505 * 120.30292 * 359.43838 * 4 3 2 6 6 C 1.38607 * 119.56885 * 0.18307 * 5 4 3 7 7 C 1.38018 * 120.04434 * 179.74570 * 2 1 3 8 8 N 1.39913 * 120.84644 * 180.29303 * 6 5 4 9 9 S 1.65593 * 120.54306 * 166.53790 * 8 6 5 10 10 O 1.42101 * 104.28029 * 198.31928 * 9 8 6 11 11 O 1.42102 * 104.27760 * 326.17579 * 9 8 6 12 12 C 1.81405 * 104.45032 * 82.24686 * 9 8 6 13 13 C 1.52999 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.46821 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.46983 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99619 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00169 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00241 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47291 * 120.00058 * 19 17 15 22 22 H 1.48508 * 109.47294 * 239.99965 * 19 17 15 23 23 C 1.46924 * 118.91756 * 346.52171 * 8 6 5 24 24 C 1.53428 * 107.80113 * 44.65510 * 23 8 6 25 25 C 1.50601 * 118.93033 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47304 * 270.25708 * 1 2 3 27 27 H 1.09006 * 109.46937 * 30.25779 * 1 2 3 28 28 H 1.09000 * 109.47435 * 150.25514 * 1 2 3 29 29 H 1.07995 * 119.92017 * 0.07799 * 3 2 1 30 30 H 1.07992 * 119.85102 * 179.70541 * 4 3 2 31 31 H 1.08006 * 119.98425 * 0.05058 * 7 2 1 32 32 H 1.08997 * 109.46792 * 300.00345 * 12 9 8 33 33 H 1.08996 * 109.46677 * 60.00060 * 12 9 8 34 34 H 1.09006 * 109.47081 * 299.99518 * 13 12 9 35 35 H 1.08996 * 109.47576 * 60.00252 * 13 12 9 36 36 H 1.08997 * 109.46685 * 299.99720 * 14 13 12 37 37 H 1.08996 * 109.47110 * 59.99635 * 14 13 12 38 38 H 0.96998 * 119.99942 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.79764 * 285.07942 * 23 8 6 40 40 H 1.09001 * 109.84496 * 164.25766 * 23 8 6 41 41 H 1.09002 * 109.58097 * 176.99097 * 24 23 8 42 42 H 1.09004 * 109.57574 * 56.60998 * 24 23 8 43 43 H 1.08994 * 109.29952 * 279.82810 * 25 5 4 44 44 H 1.08998 * 109.29586 * 39.40943 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5807 1.2001 -0.0068 5 6 4.2820 0.0057 -0.0019 6 6 3.5888 -1.1945 0.0060 7 6 2.1980 -1.1947 0.0053 8 7 4.2702 -2.4165 0.0172 9 16 3.4678 -3.8242 0.3585 10 8 4.4980 -4.7397 0.7046 11 8 2.4782 -3.4431 1.3044 12 6 2.6967 -4.2984 -1.2136 13 6 1.9157 -5.6006 -1.0262 14 6 1.2658 -6.0007 -2.3523 15 6 0.4960 -7.2830 -2.1677 16 1 0.4729 -7.7646 -1.2013 17 6 -0.1789 -7.8414 -3.2324 18 7 -0.1512 -7.2547 -4.4091 19 14 -1.1325 -9.4312 -3.0037 20 1 -1.0071 -9.8854 -1.5955 21 1 -2.5642 -9.2000 -3.3231 22 1 -0.5849 -10.4719 -3.9107 23 6 5.7091 -2.4302 -0.2792 24 6 6.3593 -1.2788 0.4989 25 6 5.7875 0.0449 -0.0090 26 1 -0.3634 0.0046 1.0276 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6590 2.1322 0.0013 30 1 4.1163 2.1378 -0.0116 31 1 1.6584 -2.1303 0.0086 32 1 2.0165 -3.5104 -1.5367 33 1 3.4697 -4.4432 -1.9682 34 1 2.5956 -6.3888 -0.7028 35 1 1.1426 -5.4553 -0.2717 36 1 0.5860 -5.2126 -2.6761 37 1 2.0391 -6.1461 -3.1066 38 1 -0.6257 -7.6477 -5.1583 39 1 5.8672 -2.2889 -1.3483 40 1 6.1427 -3.3795 0.0355 41 1 7.4378 -1.2948 0.3417 42 1 6.1417 -1.3872 1.5614 43 1 6.1385 0.2229 -1.0254 44 1 6.1298 0.8532 0.6372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111351528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:02 Heat of formation + Delta-G solvation = -85.343397 kcal Electronic energy + Delta-G solvation = -25639.928504 eV Core-core repulsion = 22068.460263 eV Total energy + Delta-G solvation = -3571.468241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25824 -38.64959 -37.78811 -37.29162 -36.55820 -34.84001 -34.23104 -32.81069 -30.78788 -29.75917 -28.22912 -25.95915 -25.51722 -24.16452 -23.25865 -22.34578 -21.09163 -19.86955 -18.99425 -18.61278 -17.80689 -17.43789 -17.07594 -16.64085 -16.52727 -16.12649 -15.85805 -15.32262 -14.89217 -14.62147 -14.57182 -14.49510 -14.32843 -14.11786 -13.98545 -13.69368 -13.54375 -13.39270 -13.19973 -13.08292 -12.97696 -12.93713 -12.80912 -12.68574 -12.32268 -12.19651 -11.96199 -11.83774 -11.71057 -11.54747 -11.47548 -11.34296 -10.97940 -10.60811 -9.53401 -8.91606 -8.25135 -6.36649 -1.06472 0.39523 0.46291 1.33063 1.38529 1.39198 1.52573 2.37670 2.50210 2.81492 2.90339 3.08506 3.30832 3.62970 3.70080 3.82458 3.95616 3.97404 4.05929 4.14367 4.27202 4.30553 4.44091 4.50573 4.55280 4.61773 4.70546 4.74789 4.81313 4.81783 4.87090 4.96900 4.98282 5.05330 5.13526 5.25328 5.27588 5.37669 5.40795 5.56159 5.60142 5.64581 5.73897 5.75423 6.14223 6.15442 6.78532 7.32991 8.86673 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003446 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.722745 B = 8122.825434 C = 9086.649748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.130 4.130 6 C 0.166 3.834 7 C -0.204 4.204 8 N -0.937 5.937 9 S 2.610 3.390 10 O -0.971 6.971 11 O -0.972 6.972 12 C -0.605 4.605 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.088 3.912 24 C -0.129 4.129 25 C -0.073 4.073 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.002 0.998 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 20.590 7.792 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.167 4.167 4 C -0.103 4.103 5 C -0.134 4.134 6 C 0.070 3.930 7 C -0.225 4.225 8 N -0.763 5.763 9 S 2.709 3.291 10 O -0.962 6.962 11 O -0.962 6.962 12 C -0.736 4.736 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.590 4.590 16 H 0.079 0.921 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.035 4.035 24 C -0.168 4.168 25 C -0.109 4.109 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.189 20.046 8.497 24.952 hybrid contribution -0.987 -1.153 -0.806 1.719 sum 11.202 18.893 7.691 23.272 Atomic orbital electron populations 1.20883 0.90007 1.03565 1.03089 1.19934 0.97063 0.92391 0.97223 1.21257 0.94673 0.97672 1.03101 1.21307 0.94002 0.97669 0.97359 1.19831 0.97423 0.90830 1.05320 1.17467 0.90417 0.85665 0.99421 1.21251 0.92496 1.00192 1.08562 1.55691 1.19143 1.19198 1.82219 1.05029 0.73905 0.72725 0.77439 1.93525 1.56682 1.63042 1.82902 1.93565 1.61795 1.81504 1.59383 1.30540 1.13124 1.08212 1.21738 1.21337 0.98744 0.92963 1.01259 1.18954 0.94673 0.95350 0.91634 1.21731 1.31562 1.09130 0.96596 0.92087 1.25937 0.97463 1.01265 0.94811 1.70081 1.43894 1.41300 1.01640 0.85412 0.78225 0.78851 0.78676 1.18756 1.20170 1.20118 1.22202 0.76393 1.02491 1.02420 1.21866 1.01928 0.93494 0.99464 1.20466 0.88593 0.98370 1.03498 0.90451 0.89136 0.92328 0.83308 0.82399 0.86606 0.84250 0.83297 0.91153 0.91425 0.97923 0.97730 0.92576 0.88336 0.87903 0.86632 0.92354 0.88701 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 10.01 71.24 0.71 -1.76 16 2 C -0.07 -1.59 5.88 -19.90 -0.12 -1.71 16 3 C -0.15 -2.79 9.70 22.26 0.22 -2.57 16 4 C -0.09 -1.44 9.67 22.31 0.22 -1.23 16 5 C -0.13 -2.63 5.76 -19.74 -0.11 -2.75 16 6 C 0.17 4.42 6.22 38.14 0.24 4.65 16 7 C -0.20 -5.95 7.98 22.42 0.18 -5.77 16 8 N -0.94 -24.62 3.20 -337.69 -1.08 -25.70 16 9 S 2.61 84.39 4.81 -56.49 -0.27 84.12 16 10 O -0.97 -34.68 16.39 -127.65 -2.09 -36.77 16 11 O -0.97 -36.75 15.04 -127.65 -1.92 -38.67 16 12 C -0.60 -19.94 5.98 71.98 0.43 -19.51 16 13 C -0.10 -4.35 5.16 30.60 0.16 -4.19 16 14 C 0.03 1.69 4.97 29.85 0.15 1.84 16 15 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 19 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.09 1.70 6.46 86.44 0.56 2.26 16 24 C -0.13 -1.88 6.11 30.69 0.19 -1.69 16 25 C -0.07 -0.95 5.78 29.77 0.17 -0.78 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.41 8.09 -2.38 -0.02 1.39 16 28 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.12 3.72 4.60 -2.91 -0.01 3.71 16 32 H 0.14 4.33 7.09 -2.39 -0.02 4.32 16 33 H 0.15 4.30 8.14 -2.39 -0.02 4.28 16 34 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 2.07 6.70 -2.39 -0.02 2.05 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 Total: -1.00 -75.39 364.09 1.61 -73.78 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.98 Total: 16.49 kcal Atomic # 6 Polarization: -67.63 SS G_CDS: 3.68 Total: -63.95 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -0.79 Total: -81.35 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -4.01 Total: -75.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 84.39 SS G_CDS: -0.27 Total: 84.12 kcal Total: -75.39 1.61 -73.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111351528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.567 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds