Wall clock time and date at job start Tue Mar 31 2020 13:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46838 * 299.99790 * 3 2 1 6 6 H 1.48500 * 109.47401 * 59.99640 * 3 2 1 7 7 C 1.37879 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46929 * 179.97438 * 9 7 2 11 11 O 1.42892 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.35899 * 117.00504 * 179.97438 * 11 10 9 13 13 C 1.38759 * 120.05136 * 0.02562 * 12 11 10 14 14 C 1.38120 * 119.94418 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.05598 * 0.02562 * 14 13 12 16 16 C 1.38243 * 120.11373 * 359.95354 * 15 14 13 17 17 C 1.50698 * 119.97646 * 180.02562 * 16 15 14 18 18 N 1.46894 * 109.47384 * 90.00070 * 17 16 15 19 19 C 1.46472 * 110.99857 * 64.02012 * 18 17 16 20 20 C 1.53255 * 109.85787 * 197.76544 * 19 18 17 21 21 S 1.81899 * 108.50615 * 297.99806 * 20 19 18 22 22 O 1.42105 * 109.46535 * 167.14719 * 21 20 19 23 23 C 1.81898 * 101.91509 * 51.30474 * 21 20 19 24 24 C 1.46468 * 111.00371 * 190.00122 * 18 17 16 25 25 C 1.38172 * 120.05144 * 0.28058 * 16 15 14 26 26 H 0.97003 * 119.99521 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47104 * 59.99603 * 9 7 2 28 28 H 1.09000 * 109.46896 * 299.99309 * 9 7 2 29 29 H 1.08997 * 109.47429 * 59.99952 * 10 9 7 30 30 H 1.09006 * 109.47240 * 299.99694 * 10 9 7 31 31 H 1.07993 * 120.02850 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.97213 * 180.02562 * 14 13 12 33 33 H 1.08002 * 119.94656 * 179.97438 * 15 14 13 34 34 H 1.08997 * 109.46874 * 329.99871 * 17 16 15 35 35 H 1.09006 * 109.47306 * 210.00212 * 17 16 15 36 36 H 1.09002 * 109.40587 * 77.65126 * 19 18 17 37 37 H 1.08998 * 109.40599 * 317.88372 * 19 18 17 38 38 H 1.08997 * 109.62692 * 178.28869 * 20 19 18 39 39 H 1.09000 * 109.62863 * 57.70595 * 20 19 18 40 40 H 1.09004 * 109.63186 * 68.39947 * 23 21 20 41 41 H 1.08991 * 109.63169 * 188.78762 * 23 21 20 42 42 H 1.09005 * 109.40402 * 42.11540 * 24 18 17 43 43 H 1.08997 * 109.40779 * 282.35438 * 24 18 17 44 44 H 1.08007 * 120.02387 * 179.74055 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 0.0011 12 6 2.2706 -6.0394 0.0007 13 6 3.6564 -5.9682 0.0002 14 6 4.4064 -7.1280 -0.0008 15 6 3.7773 -8.3596 -0.0019 16 6 2.3968 -8.4333 -0.0010 17 6 1.7146 -9.7770 -0.0015 18 7 1.4938 -10.2147 1.3832 19 6 0.5747 -9.3112 2.0791 20 6 0.6983 -9.5082 3.5939 21 16 0.2225 -11.2175 3.9945 22 8 0.6071 -11.5155 5.3297 23 6 1.2513 -12.1743 2.8392 24 6 1.0515 -11.6103 1.4284 25 6 1.6421 -7.2759 -0.0048 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 4.1481 -5.0067 -0.0002 32 1 5.4849 -7.0731 -0.0008 33 1 4.3655 -9.2654 -0.0031 34 1 2.3433 -10.5034 -0.5164 35 1 0.7561 -9.6976 -0.5147 36 1 -0.4480 -9.5250 1.7683 37 1 0.8205 -8.2797 1.8267 38 1 0.0352 -8.8131 4.1088 39 1 1.7287 -9.3328 3.9030 40 1 2.2999 -12.0865 3.1236 41 1 0.9518 -13.2220 2.8637 42 1 1.6331 -12.1977 0.7178 43 1 -0.0042 -11.6645 1.1629 44 1 0.5636 -7.3340 -0.0084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119398210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:05 Heat of formation + Delta-G solvation = -49.437847 kcal Electronic energy + Delta-G solvation = -24377.036107 eV Core-core repulsion = 20807.124848 eV Total energy + Delta-G solvation = -3569.911260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05973 -38.65141 -36.96951 -35.88114 -33.42798 -32.51351 -31.80903 -30.88163 -29.65873 -29.06509 -25.63568 -24.85713 -24.01123 -22.36153 -21.94329 -21.18997 -20.17963 -17.77516 -17.65036 -16.59978 -16.29864 -15.96752 -15.67998 -15.43309 -15.35116 -15.21911 -15.11024 -14.72389 -14.53287 -14.36405 -13.74667 -13.31987 -13.05962 -12.79804 -12.62038 -12.44887 -12.35638 -12.18228 -11.91574 -11.85855 -11.57156 -11.37456 -11.36256 -11.22294 -10.91590 -10.72129 -10.49609 -10.07290 -9.90013 -9.69403 -9.32034 -8.87633 -8.62010 -8.53347 -8.48333 -7.88777 -6.13712 -4.18269 1.31899 1.35583 1.63796 2.23976 3.24330 3.31545 3.34942 3.38101 3.52160 3.77314 4.00078 4.37885 4.45361 4.56334 4.64917 4.78563 4.84535 4.93542 4.98325 5.11119 5.15199 5.23008 5.24374 5.31441 5.36772 5.43748 5.57610 5.58762 5.63770 5.75160 5.80563 5.99238 6.01918 6.11082 6.46415 6.51534 6.57713 6.66327 6.68568 6.73795 6.93567 7.46740 7.59994 7.77656 8.01310 8.20345 8.87470 9.46332 10.97918 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002316 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.649569 B =12084.573549 C =12975.873801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.210 4.210 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.049 4.049 17 C 0.104 3.896 18 N -0.554 5.554 19 C 0.067 3.933 20 C -0.428 4.428 21 S 1.226 4.774 22 O -0.859 6.859 23 C -0.434 4.434 24 C 0.081 3.919 25 C -0.158 4.158 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -25.634 -0.069 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.229 6.229 12 C 0.098 3.902 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.169 4.169 16 C -0.050 4.050 17 C -0.023 4.023 18 N -0.280 5.280 19 C -0.061 4.061 20 C -0.567 4.567 21 S 1.425 4.575 22 O -0.854 6.854 23 C -0.572 4.572 24 C -0.048 4.048 25 C -0.178 4.178 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.439 -25.803 0.889 25.822 hybrid contribution 2.321 1.472 -0.001 2.749 sum 1.883 -24.330 0.887 24.419 Atomic orbital electron populations 1.69984 1.06102 1.26893 1.49762 1.24990 0.94911 0.99406 0.94885 0.86434 0.79986 0.83242 0.77752 1.19648 1.20803 1.20811 1.21005 0.93077 0.90200 1.52167 0.92337 1.19126 0.94163 0.89023 0.98857 1.23333 0.97084 0.80786 0.99651 1.86165 1.36565 1.13214 1.86962 1.19149 0.90104 0.87497 0.93420 1.21410 0.93266 0.99872 1.08304 1.20902 0.99459 0.91971 0.97564 1.20748 0.93718 0.97363 1.05026 1.19345 0.93554 0.93273 0.98835 1.20956 0.99325 0.93887 0.88125 1.61084 1.49204 1.01878 1.15799 1.21867 0.94329 0.99406 0.90503 1.27549 1.09108 1.18148 1.01862 1.70359 1.13260 0.87482 0.86439 1.93124 1.82428 1.80509 1.29387 1.27574 1.12481 1.09609 1.07536 1.21625 0.99707 0.88503 0.94947 1.20282 0.99985 0.89483 1.08014 0.92734 0.95393 0.95400 0.93169 0.93124 0.85275 0.86213 0.86462 0.89558 0.93132 0.92824 0.88302 0.86335 0.88625 0.88736 0.86643 0.89853 0.92844 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.38 4.68 37.16 0.17 1.55 16 11 O -0.32 -6.27 10.14 -19.42 -0.20 -6.47 16 12 C 0.15 2.41 6.69 -39.22 -0.26 2.15 16 13 C -0.21 -3.19 9.04 -39.43 -0.36 -3.54 16 14 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 15 C -0.15 -1.75 9.70 -39.56 -0.38 -2.13 16 16 C -0.05 -0.57 4.88 -104.65 -0.51 -1.08 16 17 C 0.10 0.85 5.12 -4.98 -0.03 0.82 16 18 N -0.55 -4.47 4.40 -236.48 -1.04 -5.52 16 19 C 0.07 0.55 5.26 -3.92 -0.02 0.53 16 20 C -0.43 -3.72 6.67 37.29 0.25 -3.47 16 21 S 1.23 9.12 13.81 -107.50 -1.48 7.63 16 22 O -0.86 -12.52 18.14 -35.23 -0.64 -13.15 16 23 C -0.43 -2.79 6.67 37.28 0.25 -2.54 16 24 C 0.08 0.44 5.42 -3.93 -0.02 0.42 16 25 C -0.16 -2.16 7.72 -39.43 -0.30 -2.47 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 30 H 0.05 1.02 7.66 -51.93 -0.40 0.62 16 31 H 0.13 1.96 6.30 -52.49 -0.33 1.63 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.09 0.59 7.78 -51.93 -0.40 0.19 16 35 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.05 0.29 7.92 -51.93 -0.41 -0.12 16 37 H 0.10 1.03 4.97 -51.93 -0.26 0.77 16 38 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.40 7.76 -51.93 -0.40 -0.01 16 43 H 0.05 0.17 7.91 -51.93 -0.41 -0.24 16 44 H 0.13 1.58 7.76 -52.48 -0.41 1.17 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -35.88 367.25 -11.05 -46.92 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.76 Total: -1.65 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.17 Total: -23.93 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: -0.30 Total: -30.97 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.84 Total: -19.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 9.12 SS G_CDS: -1.48 Total: 7.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.88 -11.05 -46.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119398210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.514 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds