Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46838 * 299.99790 * 3 2 1 6 6 H 1.48500 * 109.47401 * 59.99640 * 3 2 1 7 7 C 1.37879 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46929 * 179.97438 * 9 7 2 11 11 O 1.42892 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.35899 * 117.00504 * 179.97438 * 11 10 9 13 13 C 1.38759 * 120.05136 * 0.02562 * 12 11 10 14 14 C 1.38120 * 119.94418 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.05598 * 0.02562 * 14 13 12 16 16 C 1.38243 * 120.11373 * 359.95354 * 15 14 13 17 17 C 1.50698 * 119.97646 * 180.02562 * 16 15 14 18 18 N 1.46894 * 109.47384 * 90.00070 * 17 16 15 19 19 C 1.46472 * 110.99857 * 64.02012 * 18 17 16 20 20 C 1.53255 * 109.85787 * 197.76544 * 19 18 17 21 21 S 1.81899 * 108.50615 * 297.99806 * 20 19 18 22 22 O 1.42105 * 109.46535 * 167.14719 * 21 20 19 23 23 C 1.81898 * 101.91509 * 51.30474 * 21 20 19 24 24 C 1.46468 * 111.00371 * 190.00122 * 18 17 16 25 25 C 1.38172 * 120.05144 * 0.28058 * 16 15 14 26 26 H 0.97003 * 119.99521 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47104 * 59.99603 * 9 7 2 28 28 H 1.09000 * 109.46896 * 299.99309 * 9 7 2 29 29 H 1.08997 * 109.47429 * 59.99952 * 10 9 7 30 30 H 1.09006 * 109.47240 * 299.99694 * 10 9 7 31 31 H 1.07993 * 120.02850 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.97213 * 180.02562 * 14 13 12 33 33 H 1.08002 * 119.94656 * 179.97438 * 15 14 13 34 34 H 1.08997 * 109.46874 * 329.99871 * 17 16 15 35 35 H 1.09006 * 109.47306 * 210.00212 * 17 16 15 36 36 H 1.09002 * 109.40587 * 77.65126 * 19 18 17 37 37 H 1.08998 * 109.40599 * 317.88372 * 19 18 17 38 38 H 1.08997 * 109.62692 * 178.28869 * 20 19 18 39 39 H 1.09000 * 109.62863 * 57.70595 * 20 19 18 40 40 H 1.09004 * 109.63186 * 68.39947 * 23 21 20 41 41 H 1.08991 * 109.63169 * 188.78762 * 23 21 20 42 42 H 1.09005 * 109.40402 * 42.11540 * 24 18 17 43 43 H 1.08997 * 109.40779 * 282.35438 * 24 18 17 44 44 H 1.08007 * 120.02387 * 179.74055 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 0.0011 12 6 2.2706 -6.0394 0.0007 13 6 3.6564 -5.9682 0.0002 14 6 4.4064 -7.1280 -0.0008 15 6 3.7773 -8.3596 -0.0019 16 6 2.3968 -8.4333 -0.0010 17 6 1.7146 -9.7770 -0.0015 18 7 1.4938 -10.2147 1.3832 19 6 0.5747 -9.3112 2.0791 20 6 0.6983 -9.5082 3.5939 21 16 0.2225 -11.2175 3.9945 22 8 0.6071 -11.5155 5.3297 23 6 1.2513 -12.1743 2.8392 24 6 1.0515 -11.6103 1.4284 25 6 1.6421 -7.2759 -0.0048 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 4.1481 -5.0067 -0.0002 32 1 5.4849 -7.0731 -0.0008 33 1 4.3655 -9.2654 -0.0031 34 1 2.3433 -10.5034 -0.5164 35 1 0.7561 -9.6976 -0.5147 36 1 -0.4480 -9.5250 1.7683 37 1 0.8205 -8.2797 1.8267 38 1 0.0352 -8.8131 4.1088 39 1 1.7287 -9.3328 3.9030 40 1 2.2999 -12.0865 3.1236 41 1 0.9518 -13.2220 2.8637 42 1 1.6331 -12.1977 0.7178 43 1 -0.0042 -11.6645 1.1629 44 1 0.5636 -7.3340 -0.0084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119398210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -74.854644 kcal Electronic energy + Delta-G solvation = -24378.138262 eV Core-core repulsion = 20807.124848 eV Total energy + Delta-G solvation = -3571.013415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16750 -39.55081 -38.04435 -36.81421 -35.48505 -33.32359 -32.62640 -32.38712 -30.82147 -30.11184 -27.10852 -26.10508 -24.63997 -23.54692 -23.28158 -22.04217 -21.39914 -19.08939 -18.43091 -18.12988 -17.27817 -16.99148 -16.92458 -16.86119 -16.48254 -16.10778 -15.96615 -15.79839 -15.52363 -15.19103 -14.60446 -14.39073 -14.35438 -14.22471 -14.00964 -13.54447 -13.24920 -13.13913 -12.97329 -12.84533 -12.65091 -12.61209 -12.53449 -12.42769 -12.20649 -12.12562 -11.76700 -11.59328 -11.56119 -11.37076 -10.80808 -10.64018 -9.80727 -9.26690 -9.21324 -9.07917 -8.28407 -6.41749 0.34291 0.54666 0.69871 1.39850 1.40497 1.53880 1.62642 2.26183 2.50230 2.65364 2.82088 3.06163 3.13324 3.76392 3.90928 3.98894 3.99350 4.14108 4.22247 4.23469 4.24764 4.29544 4.39823 4.44041 4.48640 4.58741 4.59567 4.71838 4.78153 4.82147 4.93901 4.99379 5.03378 5.13227 5.16770 5.30718 5.43315 5.45903 5.53092 5.64806 5.67734 5.90657 6.02819 6.07012 6.21633 6.56813 6.73009 7.28381 8.84903 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002316 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.649569 B =12084.573549 C =12975.873801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.029 3.971 10 C 0.086 3.914 11 O -0.339 6.339 12 C 0.104 3.896 13 C -0.226 4.226 14 C -0.084 4.084 15 C -0.144 4.144 16 C -0.043 4.043 17 C 0.106 3.894 18 N -0.572 5.572 19 C 0.065 3.935 20 C -0.430 4.430 21 S 1.282 4.718 22 O -0.934 6.934 23 C -0.426 4.426 24 C 0.078 3.922 25 C -0.159 4.159 26 H 0.267 0.733 27 H 0.001 0.999 28 H -0.001 1.001 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 -27.809 -1.294 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.086 0.914 9 C -0.008 4.008 10 C 0.012 3.988 11 O -0.254 6.254 12 C 0.059 3.941 13 C -0.245 4.245 14 C -0.102 4.102 15 C -0.163 4.163 16 C -0.044 4.044 17 C -0.020 4.020 18 N -0.298 5.298 19 C -0.063 4.063 20 C -0.569 4.569 21 S 1.483 4.517 22 O -0.930 6.930 23 C -0.566 4.566 24 C -0.050 4.050 25 C -0.178 4.178 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.160 0.840 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.426 -28.000 -0.324 28.005 hybrid contribution 2.073 1.961 0.329 2.873 sum 2.499 -26.039 0.004 26.159 Atomic orbital electron populations 1.70117 1.07960 1.28183 1.50615 1.26014 0.95834 1.03588 0.94158 0.85259 0.78987 0.77998 0.77955 1.18325 1.20066 1.20234 1.21417 0.93737 0.91127 1.52113 0.91378 1.18953 0.94497 0.91242 0.96089 1.22813 0.95373 0.80456 1.00169 1.86069 1.37315 1.13672 1.88337 1.19531 0.90909 0.87086 0.96563 1.21475 0.92947 1.00675 1.09420 1.21208 1.00632 0.91562 0.96837 1.21173 0.94180 0.97907 1.02998 1.19768 0.93670 0.94243 0.96685 1.21016 1.00299 0.92159 0.88501 1.60991 1.49958 1.03134 1.15713 1.21870 0.96368 0.98329 0.89741 1.27577 1.07216 1.19220 1.02882 1.69455 1.12455 0.85846 0.83983 1.92992 1.84172 1.81784 1.34007 1.27537 1.10511 1.10925 1.07633 1.21801 1.02240 0.86776 0.94164 1.20511 1.00686 0.89129 1.07443 0.92388 0.98104 0.98276 0.92734 0.92389 0.86096 0.83903 0.83689 0.87304 0.91452 0.89356 0.90832 0.85941 0.91767 0.91067 0.83974 0.88059 0.89324 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C 0.09 3.80 4.68 71.98 0.34 4.14 16 11 O -0.34 -14.18 10.14 -92.41 -0.94 -15.12 16 12 C 0.10 3.55 6.69 22.51 0.15 3.70 16 13 C -0.23 -6.94 9.04 22.37 0.20 -6.74 16 14 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 15 C -0.14 -2.98 9.70 22.28 0.22 -2.76 16 16 C -0.04 -0.89 4.88 -19.88 -0.10 -0.98 16 17 C 0.11 1.32 5.12 85.56 0.44 1.76 16 18 N -0.57 -7.33 4.40 -902.09 -3.97 -11.30 16 19 C 0.07 0.94 5.26 86.47 0.45 1.40 16 20 C -0.43 -7.32 6.67 72.07 0.48 -6.84 16 21 S 1.28 17.55 13.81 -56.49 -0.78 16.77 16 22 O -0.93 -27.61 18.14 -148.98 -2.70 -30.31 16 23 C -0.43 -4.24 6.67 72.06 0.48 -3.76 16 24 C 0.08 0.50 5.42 86.47 0.47 0.97 16 25 C -0.16 -4.25 7.72 22.37 0.17 -4.08 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.05 2.30 7.66 -2.39 -0.02 2.29 16 30 H 0.06 2.42 7.66 -2.38 -0.02 2.40 16 31 H 0.12 3.79 6.30 -2.91 -0.02 3.77 16 32 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.11 0.91 7.78 -2.39 -0.02 0.89 16 35 H 0.07 0.65 8.08 -2.38 -0.02 0.63 16 36 H 0.09 0.65 7.92 -2.39 -0.02 0.63 16 37 H 0.07 1.47 4.97 -2.39 -0.01 1.46 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.40 7.76 -2.38 -0.02 0.38 16 43 H 0.09 0.03 7.91 -2.39 -0.02 0.01 16 44 H 0.13 3.27 7.76 -2.91 -0.02 3.25 16 Total: -1.00 -82.28 367.25 -0.72 -83.00 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.98 Total: 10.72 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 4.38 Total: -43.30 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -3.69 Total: -67.30 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -3.64 Total: -45.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 17.55 SS G_CDS: -0.78 Total: 16.77 kcal Total: -82.28 -0.72 -83.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119398210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.146 kcal (2) G-P(sol) polarization free energy of solvation -82.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds