Wall clock time and date at job start Tue Mar 31 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.27141 * 2 1 4 4 C 1.54350 * 110.30283 * 237.82296 * 2 1 3 5 5 C 1.54347 * 102.39279 * 214.72445 * 4 2 1 6 6 H 1.08996 * 110.38789 * 267.37548 * 5 4 2 7 7 N 1.46504 * 110.29761 * 145.26630 * 5 4 2 8 8 S 1.65598 * 120.00005 * 99.99220 * 7 5 4 9 9 O 1.42098 * 104.27705 * 308.55558 * 8 7 5 10 10 O 1.42098 * 104.27823 * 180.69353 * 8 7 5 11 11 C 1.81411 * 104.44857 * 64.62278 * 8 7 5 12 12 C 1.53000 * 109.46815 * 173.98582 * 11 8 7 13 13 C 1.50704 * 109.46769 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00143 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00021 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00312 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46917 * 89.99923 * 17 15 13 19 19 H 1.48493 * 109.47329 * 210.00197 * 17 15 13 20 20 H 1.48498 * 109.46931 * 330.00390 * 17 15 13 21 21 C 1.51365 * 105.17094 * 26.34565 * 5 4 2 22 22 C 1.38502 * 130.39622 * 162.81441 * 21 5 4 23 23 C 1.38101 * 120.21493 * 179.97438 * 22 21 5 24 24 C 1.38253 * 119.94052 * 0.06761 * 23 22 21 25 25 C 1.38109 * 119.92941 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75788 * 342.81744 * 21 5 4 27 27 H 1.08998 * 109.46835 * 299.37691 * 1 2 3 28 28 H 1.09000 * 109.47112 * 59.37466 * 1 2 3 29 29 H 1.09002 * 109.47302 * 179.37614 * 1 2 3 30 30 H 1.08999 * 109.47579 * 180.62513 * 3 2 1 31 31 H 1.09000 * 109.47396 * 300.62519 * 3 2 1 32 32 H 1.09005 * 109.47203 * 60.62147 * 3 2 1 33 33 H 1.09000 * 110.82049 * 96.49883 * 4 2 1 34 34 H 1.08998 * 110.82137 * 332.95264 * 4 2 1 35 35 H 0.96997 * 120.00469 * 279.98439 * 7 5 4 36 36 H 1.08999 * 109.46812 * 53.99143 * 11 8 7 37 37 H 1.08996 * 109.47232 * 293.98855 * 11 8 7 38 38 H 1.09000 * 109.47342 * 60.00267 * 12 11 8 39 39 H 1.08996 * 109.47443 * 300.00144 * 12 11 8 40 40 H 0.96999 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.88989 * 359.97438 * 22 21 5 42 42 H 1.08002 * 120.02887 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03849 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.89275 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4352 0.0000 4 6 2.0655 -0.7709 -1.2253 5 6 3.3425 -1.4342 -0.6670 6 1 4.2100 -0.7995 -0.8474 7 7 3.5406 -2.7505 -1.2790 8 16 4.6193 -2.9316 -2.5224 9 8 4.2544 -1.9216 -3.4529 10 8 4.5326 -4.3082 -2.8638 11 6 6.2323 -2.5602 -1.7799 12 6 7.3391 -2.8394 -2.7988 13 6 8.6791 -2.5315 -2.1818 14 1 8.7356 -2.1722 -1.1649 15 6 9.8328 -2.7074 -2.9159 16 7 11.0022 -2.4382 -2.3776 17 14 9.7350 -3.3281 -4.6751 18 1 9.6174 -2.1735 -5.6015 19 1 10.9632 -4.0981 -4.9973 20 1 8.5467 -4.2060 -4.8249 21 6 3.0968 -1.5779 0.8196 22 6 3.7340 -2.3672 1.7626 23 6 3.3325 -2.3329 3.0835 24 6 2.2903 -1.5093 3.4667 25 6 1.6530 -0.7221 2.5277 26 6 2.0553 -0.7539 1.2028 27 1 -0.3633 0.5041 0.8955 28 1 -0.3633 0.5235 -0.8843 29 1 -0.3634 -1.0276 -0.0112 30 1 3.1499 1.4201 -0.0112 31 1 1.6949 1.9574 -0.8843 32 1 1.7130 1.9507 0.8955 33 1 2.3081 -0.0863 -2.0380 34 1 1.3490 -1.5242 -1.5526 35 1 3.0401 -3.5159 -0.9560 36 1 6.3809 -3.1877 -0.9011 37 1 6.2645 -1.5109 -1.4868 38 1 7.1906 -2.2119 -3.6776 39 1 7.3069 -3.8887 -3.0919 40 1 11.8139 -2.5623 -2.8940 41 1 4.5476 -3.0116 1.4638 42 1 3.8318 -2.9493 3.8164 43 1 1.9747 -1.4815 4.4992 44 1 0.8386 -0.0793 2.8276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126003534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:05 Heat of formation + Delta-G solvation = -62.485793 kcal Electronic energy + Delta-G solvation = -25610.001406 eV Core-core repulsion = 22039.524345 eV Total energy + Delta-G solvation = -3570.477061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83414 -36.98190 -36.63737 -35.58788 -34.98100 -33.96519 -31.49782 -31.03625 -30.16680 -28.36974 -27.49822 -25.99396 -23.98491 -22.83243 -21.36778 -21.17155 -19.51154 -19.05656 -17.74772 -17.13348 -16.63357 -15.95875 -15.54687 -15.29482 -15.24702 -14.94184 -14.31911 -14.24913 -14.10717 -13.74009 -13.62576 -13.14586 -13.12811 -12.81587 -12.64919 -12.26890 -12.16811 -11.99495 -11.90783 -11.74525 -11.70412 -11.65254 -11.28080 -11.20810 -11.18171 -11.08738 -10.86484 -10.70261 -10.46825 -10.17092 -9.85988 -9.51963 -9.22717 -8.95675 -8.75800 -8.66989 -6.17289 -4.18667 0.62726 1.16880 1.23901 2.99249 3.25967 3.33511 3.37923 3.60137 4.06968 4.13625 4.20982 4.35249 4.56910 4.68437 4.74525 4.84143 4.89747 4.93323 5.03443 5.08855 5.14616 5.29045 5.35925 5.39491 5.42539 5.50981 5.56000 5.62873 5.68676 5.70595 5.81706 5.84349 5.94435 6.00569 6.05370 6.14000 6.26317 6.33093 6.36930 6.48299 6.79809 6.82229 6.91659 7.03136 7.53830 8.35673 8.83780 9.42371 10.95064 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.003572 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.401819 B = 7837.341024 C = 8440.525016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.138 4.138 4 C -0.124 4.124 5 C 0.194 3.806 6 H 0.102 0.898 7 N -1.116 6.116 8 S 2.587 3.413 9 O -0.964 6.964 10 O -0.965 6.965 11 C -0.584 4.584 12 C -0.006 4.006 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.868 3.132 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.261 1.261 21 C -0.105 4.105 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.075 4.075 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.415 0.585 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 4.600 10.062 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.195 4.195 4 C -0.163 4.163 5 C 0.087 3.913 6 H 0.120 0.880 7 N -0.872 5.872 8 S 2.684 3.316 9 O -0.953 6.953 10 O -0.956 6.956 11 C -0.717 4.717 12 C -0.046 4.046 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.609 4.505 9.037 23.852 hybrid contribution 0.381 -0.470 0.019 0.605 sum -21.228 4.035 9.056 23.429 Atomic orbital electron populations 1.21838 0.93615 1.02043 1.01916 1.20130 0.95895 0.95131 0.91692 1.21845 1.01583 0.93952 1.02093 1.22969 0.96553 0.99734 0.97064 1.20223 0.99204 0.83738 0.88166 0.88043 1.55853 1.59170 1.15681 1.56472 1.05711 0.77079 0.74384 0.74441 1.93557 1.81682 1.60617 1.59488 1.93564 1.86495 1.33545 1.81952 1.30322 1.17758 1.11240 1.12395 1.19404 0.94179 0.97859 0.93125 1.20843 0.87789 1.45749 1.01458 0.90421 1.24983 0.95257 0.94549 0.98290 1.69884 0.97719 1.48294 1.37440 0.86935 0.78394 0.79955 0.85255 1.19667 1.20740 1.18552 1.20634 0.97040 0.97969 0.95011 1.20719 0.99408 0.98524 0.92378 1.21076 0.97574 0.99542 0.95807 1.21064 0.96418 0.96720 0.99205 1.20563 1.00326 0.99892 0.91769 1.20452 0.96019 0.96952 0.94115 0.92525 0.92104 0.92422 0.92069 0.91802 0.92396 0.89104 0.89823 0.75140 0.85483 0.85814 0.95546 0.94737 0.92377 0.85744 0.85771 0.85998 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.31 37.16 0.31 -0.73 16 2 C -0.03 -0.25 0.89 -154.63 -0.14 -0.39 16 3 C -0.14 -1.15 8.48 37.15 0.31 -0.84 16 4 C -0.12 -1.31 5.80 -25.32 -0.15 -1.46 16 5 C 0.19 2.25 3.30 -68.05 -0.22 2.03 16 6 H 0.10 1.15 7.37 -51.93 -0.38 0.77 16 7 N -1.12 -13.86 5.36 -4.99 -0.03 -13.89 16 8 S 2.59 42.97 5.38 -107.50 -0.58 42.39 16 9 O -0.96 -18.17 17.82 -57.54 -1.03 -19.20 16 10 O -0.97 -18.87 18.08 -57.54 -1.04 -19.91 16 11 C -0.58 -10.50 5.86 37.16 0.22 -10.29 16 12 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 13 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 14 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 17 Si 0.87 21.41 27.47 -169.99 -4.67 16.75 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.10 -1.16 5.73 -104.20 -0.60 -1.76 16 22 C -0.09 -0.99 10.00 -39.53 -0.40 -1.39 16 23 C -0.12 -1.16 10.05 -39.63 -0.40 -1.56 16 24 C -0.12 -1.02 10.05 -39.62 -0.40 -1.41 16 25 C -0.11 -0.97 9.76 -39.53 -0.39 -1.36 16 26 C -0.07 -0.75 4.92 -104.21 -0.51 -1.26 16 27 H 0.06 0.38 7.91 -51.93 -0.41 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 34 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 35 H 0.41 4.47 8.82 -34.46 -0.30 4.16 16 36 H 0.13 2.07 8.14 -51.92 -0.42 1.64 16 37 H 0.12 2.02 7.67 -51.93 -0.40 1.62 16 38 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 39 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.85 7.87 -52.48 -0.41 0.44 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -34.30 370.61 -10.76 -45.07 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.88 Total: 2.87 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -2.90 Total: -33.45 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.75 Total: -40.10 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.07 Total: -39.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 42.97 SS G_CDS: -0.58 Total: 42.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.30 -10.76 -45.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126003534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.420 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds