Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.27141 * 2 1 4 4 C 1.54350 * 110.30283 * 237.82296 * 2 1 3 5 5 C 1.54347 * 102.39279 * 214.72445 * 4 2 1 6 6 H 1.08996 * 110.38789 * 267.37548 * 5 4 2 7 7 N 1.46504 * 110.29761 * 145.26630 * 5 4 2 8 8 S 1.65598 * 120.00005 * 99.99220 * 7 5 4 9 9 O 1.42098 * 104.27705 * 308.55558 * 8 7 5 10 10 O 1.42098 * 104.27823 * 180.69353 * 8 7 5 11 11 C 1.81411 * 104.44857 * 64.62278 * 8 7 5 12 12 C 1.53000 * 109.46815 * 173.98582 * 11 8 7 13 13 C 1.50704 * 109.46769 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00143 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00021 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00312 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46917 * 89.99923 * 17 15 13 19 19 H 1.48493 * 109.47329 * 210.00197 * 17 15 13 20 20 H 1.48498 * 109.46931 * 330.00390 * 17 15 13 21 21 C 1.51365 * 105.17094 * 26.34565 * 5 4 2 22 22 C 1.38502 * 130.39622 * 162.81441 * 21 5 4 23 23 C 1.38101 * 120.21493 * 179.97438 * 22 21 5 24 24 C 1.38253 * 119.94052 * 0.06761 * 23 22 21 25 25 C 1.38109 * 119.92941 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75788 * 342.81744 * 21 5 4 27 27 H 1.08998 * 109.46835 * 299.37691 * 1 2 3 28 28 H 1.09000 * 109.47112 * 59.37466 * 1 2 3 29 29 H 1.09002 * 109.47302 * 179.37614 * 1 2 3 30 30 H 1.08999 * 109.47579 * 180.62513 * 3 2 1 31 31 H 1.09000 * 109.47396 * 300.62519 * 3 2 1 32 32 H 1.09005 * 109.47203 * 60.62147 * 3 2 1 33 33 H 1.09000 * 110.82049 * 96.49883 * 4 2 1 34 34 H 1.08998 * 110.82137 * 332.95264 * 4 2 1 35 35 H 0.96997 * 120.00469 * 279.98439 * 7 5 4 36 36 H 1.08999 * 109.46812 * 53.99143 * 11 8 7 37 37 H 1.08996 * 109.47232 * 293.98855 * 11 8 7 38 38 H 1.09000 * 109.47342 * 60.00267 * 12 11 8 39 39 H 1.08996 * 109.47443 * 300.00144 * 12 11 8 40 40 H 0.96999 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.88989 * 359.97438 * 22 21 5 42 42 H 1.08002 * 120.02887 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03849 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.89275 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4352 0.0000 4 6 2.0655 -0.7709 -1.2253 5 6 3.3425 -1.4342 -0.6670 6 1 4.2100 -0.7995 -0.8474 7 7 3.5406 -2.7505 -1.2790 8 16 4.6193 -2.9316 -2.5224 9 8 4.2544 -1.9216 -3.4529 10 8 4.5326 -4.3082 -2.8638 11 6 6.2323 -2.5602 -1.7799 12 6 7.3391 -2.8394 -2.7988 13 6 8.6791 -2.5315 -2.1818 14 1 8.7356 -2.1722 -1.1649 15 6 9.8328 -2.7074 -2.9159 16 7 11.0022 -2.4382 -2.3776 17 14 9.7350 -3.3281 -4.6751 18 1 9.6174 -2.1735 -5.6015 19 1 10.9632 -4.0981 -4.9973 20 1 8.5467 -4.2060 -4.8249 21 6 3.0968 -1.5779 0.8196 22 6 3.7340 -2.3672 1.7626 23 6 3.3325 -2.3329 3.0835 24 6 2.2903 -1.5093 3.4667 25 6 1.6530 -0.7221 2.5277 26 6 2.0553 -0.7539 1.2028 27 1 -0.3633 0.5041 0.8955 28 1 -0.3633 0.5235 -0.8843 29 1 -0.3634 -1.0276 -0.0112 30 1 3.1499 1.4201 -0.0112 31 1 1.6949 1.9574 -0.8843 32 1 1.7130 1.9507 0.8955 33 1 2.3081 -0.0863 -2.0380 34 1 1.3490 -1.5242 -1.5526 35 1 3.0401 -3.5159 -0.9560 36 1 6.3809 -3.1877 -0.9011 37 1 6.2645 -1.5109 -1.4868 38 1 7.1906 -2.2119 -3.6776 39 1 7.3069 -3.8887 -3.0919 40 1 11.8139 -2.5623 -2.8940 41 1 4.5476 -3.0116 1.4638 42 1 3.8318 -2.9493 3.8164 43 1 1.9747 -1.4815 4.4992 44 1 0.8386 -0.0793 2.8276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126003534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = -84.992382 kcal Electronic energy + Delta-G solvation = -25610.977365 eV Core-core repulsion = 22039.524345 eV Total energy + Delta-G solvation = -3571.453020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59078 -38.21804 -37.61457 -37.04939 -35.91443 -35.88731 -33.48725 -31.86798 -30.86878 -29.17539 -28.11815 -27.90223 -24.77779 -23.57136 -23.22668 -21.99951 -20.47557 -20.12146 -19.41913 -18.63889 -17.78585 -17.08521 -16.74628 -16.43005 -16.36525 -16.05660 -15.82316 -15.30168 -15.02082 -14.84074 -14.77389 -14.46745 -13.96845 -13.86064 -13.80107 -13.37215 -13.26061 -13.15175 -13.12275 -13.07432 -12.97615 -12.91263 -12.86133 -12.40690 -12.26019 -11.98195 -11.92165 -11.82556 -11.71507 -11.64954 -11.43344 -11.29202 -10.84726 -10.47195 -9.70573 -9.50300 -8.36912 -6.42793 -0.74928 0.41425 0.50783 1.31766 1.33832 1.44069 1.76935 2.29311 2.71330 2.86373 2.97087 3.22732 3.32493 3.45658 3.86226 3.91383 3.98652 4.00136 4.13053 4.17118 4.22034 4.32303 4.37895 4.54961 4.61072 4.62987 4.70741 4.85543 4.94544 5.01547 5.02686 5.06063 5.06716 5.08467 5.17687 5.19239 5.28920 5.35801 5.46565 5.46631 5.61011 5.65296 5.73648 6.05873 6.11925 6.16224 6.63203 7.21677 8.78661 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.003572 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.401819 B = 7837.341024 C = 8440.525016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.138 4.138 4 C -0.127 4.127 5 C 0.185 3.815 6 H 0.100 0.900 7 N -1.098 6.098 8 S 2.620 3.380 9 O -0.983 6.983 10 O -0.992 6.992 11 C -0.591 4.591 12 C -0.016 4.016 13 C -0.527 4.527 14 H 0.048 0.952 15 C 0.014 3.986 16 N -0.940 5.940 17 Si 0.924 3.076 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.249 1.249 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.081 4.081 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.425 0.575 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.270 0.730 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.966 4.888 10.419 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.166 4.166 5 C 0.078 3.922 6 H 0.117 0.883 7 N -0.858 5.858 8 S 2.716 3.284 9 O -0.972 6.972 10 O -0.982 6.982 11 C -0.722 4.722 12 C -0.055 4.055 13 C -0.566 4.566 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.580 5.580 17 Si 0.747 3.253 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.173 1.173 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.081 4.081 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.261 0.739 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.921 4.789 9.401 26.145 hybrid contribution 1.054 -0.513 0.063 1.174 sum -22.867 4.276 9.463 25.115 Atomic orbital electron populations 1.21822 0.92265 1.02134 1.02911 1.20111 0.96901 0.94998 0.90443 1.21859 1.00840 0.93774 1.03049 1.23001 0.96050 0.99858 0.97741 1.20438 0.99859 0.82910 0.88965 0.88265 1.55428 1.57771 1.16812 1.55767 1.04517 0.76407 0.73114 0.74358 1.93531 1.81775 1.61194 1.60746 1.93522 1.86775 1.35095 1.82839 1.30324 1.17560 1.12591 1.11736 1.19364 0.93838 0.97795 0.94517 1.21162 0.90086 1.44871 1.00481 0.93332 1.25870 0.94923 0.94937 1.02726 1.70012 0.98582 1.50032 1.39345 0.86032 0.79061 0.80042 0.80170 1.18427 1.19915 1.17279 1.20609 0.98058 0.99115 0.94458 1.20863 0.99795 0.99019 0.93192 1.21329 0.97980 0.99951 0.95568 1.21404 0.95666 0.95781 1.00457 1.20855 1.00707 0.99969 0.91289 1.20640 0.95715 0.96823 0.94947 0.91256 0.91432 0.92765 0.93270 0.90997 0.91326 0.89469 0.89667 0.73870 0.84141 0.84518 0.95067 0.94810 0.92118 0.86083 0.84350 0.83533 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.31 71.98 0.60 -1.11 16 2 C -0.02 -0.39 0.89 -52.26 -0.05 -0.44 16 3 C -0.14 -2.08 8.48 71.98 0.61 -1.47 16 4 C -0.13 -2.54 5.80 31.51 0.18 -2.35 16 5 C 0.19 4.15 3.30 44.91 0.15 4.30 16 6 H 0.10 2.23 7.37 -2.39 -0.02 2.21 16 7 N -1.10 -26.29 5.36 -169.71 -0.91 -27.20 16 8 S 2.62 84.93 5.38 -56.49 -0.30 84.63 16 9 O -0.98 -36.14 17.82 -127.65 -2.28 -38.42 16 10 O -0.99 -37.89 18.08 -127.65 -2.31 -40.20 16 11 C -0.59 -21.09 5.86 71.98 0.42 -20.66 16 12 C -0.02 -0.75 4.05 29.85 0.12 -0.63 16 13 C -0.53 -29.79 9.66 25.60 0.25 -29.55 16 14 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 15 C 0.01 0.81 5.47 84.65 0.46 1.27 16 16 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 17 Si 0.92 43.82 27.47 68.60 1.88 45.71 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.25 -11.24 6.54 99.48 0.65 -10.58 16 21 C -0.12 -2.55 5.73 -19.59 -0.11 -2.66 16 22 C -0.11 -2.29 10.00 22.30 0.22 -2.07 16 23 C -0.13 -2.28 10.05 22.24 0.22 -2.05 16 24 C -0.12 -1.72 10.05 22.24 0.22 -1.50 16 25 C -0.11 -1.71 9.76 22.30 0.22 -1.49 16 26 C -0.08 -1.48 4.92 -19.60 -0.10 -1.57 16 27 H 0.07 0.71 7.91 -2.39 -0.02 0.69 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 1.78 7.90 -2.39 -0.02 1.76 16 34 H 0.08 1.65 7.85 -2.39 -0.02 1.63 16 35 H 0.43 8.69 8.82 -96.75 -0.85 7.84 16 36 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 37 H 0.14 4.45 7.67 -2.39 -0.02 4.43 16 38 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 39 H 0.03 1.58 7.20 -2.39 -0.02 1.56 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 1.52 7.87 -2.91 -0.02 1.50 16 Total: -1.00 -73.42 370.61 -0.11 -73.53 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.08 Total: 21.50 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 3.43 Total: -61.99 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -0.61 Total: -84.76 kcal Atomic # 8 Polarization: -74.04 SS G_CDS: -4.58 Total: -78.62 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 16 Polarization: 84.93 SS G_CDS: -0.30 Total: 84.63 kcal Total: -73.42 -0.11 -73.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126003534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.463 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds