Wall clock time and date at job start Tue Mar 31 2020 14:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.26645 * 2 1 4 4 C 1.54602 * 110.28373 * 237.82989 * 2 1 3 5 5 C 1.54353 * 102.27150 * 214.71923 * 4 2 1 6 6 H 1.08996 * 110.30319 * 145.33850 * 5 4 2 7 7 N 1.46500 * 110.30069 * 267.39571 * 5 4 2 8 8 S 1.65608 * 119.99645 * 213.62625 * 7 5 4 9 9 O 1.42102 * 104.27540 * 308.92809 * 8 7 5 10 10 O 1.42095 * 104.27707 * 181.07170 * 8 7 5 11 11 C 1.81396 * 104.44869 * 64.99969 * 8 7 5 12 12 C 1.53004 * 109.47142 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.47211 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.51374 * 105.25417 * 26.36491 * 5 4 2 22 22 C 1.38494 * 130.38907 * 162.75968 * 21 5 4 23 23 C 1.38107 * 120.21501 * 179.97438 * 22 21 5 24 24 C 1.38255 * 119.93323 * 0.02821 * 23 22 21 25 25 C 1.38104 * 119.93385 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75792 * 342.76297 * 21 5 4 27 27 H 1.09001 * 109.47045 * 299.38003 * 1 2 3 28 28 H 1.09001 * 109.46937 * 59.37839 * 1 2 3 29 29 H 1.08999 * 109.47149 * 179.37750 * 1 2 3 30 30 H 1.08999 * 109.46635 * 180.61921 * 3 2 1 31 31 H 1.09001 * 109.47065 * 300.61633 * 3 2 1 32 32 H 1.08995 * 109.46922 * 60.61958 * 3 2 1 33 33 H 1.09001 * 110.90148 * 96.52687 * 4 2 1 34 34 H 1.08993 * 110.85432 * 332.89127 * 4 2 1 35 35 H 0.96992 * 120.00581 * 33.62388 * 7 5 4 36 36 H 1.09000 * 109.47615 * 59.99959 * 11 8 7 37 37 H 1.09007 * 109.47380 * 299.99639 * 11 8 7 38 38 H 1.09000 * 109.47211 * 59.99329 * 12 11 8 39 39 H 1.09007 * 109.46376 * 299.99872 * 12 11 8 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.89469 * 359.97438 * 22 21 5 42 42 H 1.08004 * 120.03059 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.03023 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.88909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4353 0.0000 4 6 2.0660 -0.7721 -1.2275 5 6 3.3426 -1.4343 -0.6668 6 1 3.4918 -2.4134 -1.1218 7 7 4.5071 -0.5791 -0.9091 8 16 5.9867 -1.2604 -1.2081 9 8 6.1663 -2.1879 -0.1466 10 8 6.8586 -0.1495 -1.3656 11 6 5.7738 -2.1311 -2.7851 12 6 7.0882 -2.8108 -3.1740 13 6 6.9115 -3.5336 -4.4844 14 1 5.9570 -3.5108 -4.9892 15 6 7.9666 -4.2291 -5.0358 16 7 9.1288 -4.2570 -4.4209 17 14 7.7454 -5.1315 -6.6563 18 1 8.0818 -4.2209 -7.7800 19 1 8.6436 -6.3136 -6.6913 20 1 6.3349 -5.5775 -6.7860 21 6 3.0966 -1.5779 0.8199 22 6 3.7337 -2.3673 1.7628 23 6 3.3322 -2.3330 3.0837 24 6 2.2905 -1.5086 3.4669 25 6 1.6540 -0.7208 2.5281 26 6 2.0552 -0.7538 1.2030 27 1 -0.3633 0.5042 0.8955 28 1 -0.3633 0.5235 -0.8844 29 1 -0.3633 -1.0276 -0.0112 30 1 3.1498 1.4201 -0.0111 31 1 1.6949 1.9575 -0.8844 32 1 1.7129 1.9508 0.8955 33 1 2.3094 -0.0886 -2.0409 34 1 1.3501 -1.5261 -1.5545 35 1 4.4117 0.3860 -0.8945 36 1 5.4905 -1.4175 -3.5589 37 1 4.9925 -2.8842 -2.6818 38 1 7.3711 -3.5244 -2.4001 39 1 7.8698 -2.0579 -3.2771 40 1 9.8710 -4.7466 -4.8086 41 1 4.5473 -3.0118 1.4641 42 1 3.8314 -2.9495 3.8166 43 1 1.9749 -1.4809 4.4994 44 1 0.8400 -0.0774 2.8282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126003747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:08 Heat of formation + Delta-G solvation = -64.564116 kcal Electronic energy + Delta-G solvation = -25727.696021 eV Core-core repulsion = 22157.128837 eV Total energy + Delta-G solvation = -3570.567184 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77716 -36.90229 -36.56106 -35.42385 -34.59406 -33.90223 -31.17447 -31.00308 -30.03596 -28.38429 -27.52176 -25.61227 -23.91989 -22.73445 -21.69550 -21.05557 -19.47198 -18.95401 -17.50788 -16.99089 -16.41149 -15.63695 -15.43255 -15.29371 -15.11948 -14.84024 -14.56741 -14.22608 -13.88103 -13.79030 -13.39444 -13.25004 -12.88693 -12.53334 -12.47658 -12.23378 -12.17684 -11.83438 -11.76318 -11.68147 -11.56785 -11.48843 -11.23424 -11.09105 -11.07478 -10.96435 -10.62764 -10.58997 -10.41114 -10.36767 -9.82466 -9.53895 -9.07005 -8.79523 -8.65871 -8.51076 -6.13151 -4.18845 0.76361 1.32213 1.42355 3.14454 3.25500 3.31853 3.34387 3.79705 4.15350 4.20075 4.30656 4.38132 4.66282 4.73097 4.78658 4.87948 4.97815 5.03608 5.14729 5.19293 5.22228 5.33538 5.40338 5.42722 5.55151 5.60430 5.64556 5.67539 5.72310 5.76151 5.82017 5.93888 5.98415 6.03953 6.09488 6.18305 6.44678 6.47667 6.56801 6.68686 7.00520 7.11120 7.29240 7.35383 7.79700 8.16604 8.84567 9.46029 10.97870 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.003350 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.477833 B = 8355.220396 C = 8732.710261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.120 4.120 5 C 0.192 3.808 6 H 0.097 0.903 7 N -1.115 6.115 8 S 2.588 3.412 9 O -0.962 6.962 10 O -0.968 6.968 11 C -0.590 4.590 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.111 4.111 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.076 4.076 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.138 0.862 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 8.485 11.337 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.195 4.195 4 C -0.159 4.159 5 C 0.084 3.916 6 H 0.114 0.886 7 N -0.871 5.871 8 S 2.686 3.314 9 O -0.951 6.951 10 O -0.958 6.958 11 C -0.723 4.723 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.077 4.077 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.156 0.844 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.868 8.323 11.902 23.026 hybrid contribution -0.419 -0.284 -1.243 1.342 sum -18.287 8.039 10.659 22.642 Atomic orbital electron populations 1.21833 0.93630 1.02096 1.01841 1.20156 0.95675 0.95012 0.91882 1.21892 1.01296 0.94244 1.02073 1.22835 0.95907 1.00003 0.97126 1.20027 0.86366 0.94059 0.91099 0.88552 1.56020 1.25849 1.16918 1.88351 1.05698 0.72542 0.75046 0.78108 1.93524 1.84062 1.65372 1.52189 1.93552 1.62835 1.51520 1.87939 1.30466 1.10771 1.12524 1.18585 1.18959 0.87299 0.95995 0.98813 1.20999 0.97696 1.32000 1.05284 0.92040 1.25066 0.95147 0.96386 0.97878 1.69952 1.01904 1.41926 1.39046 0.86474 0.78143 0.79301 0.83389 1.20469 1.21007 1.19751 1.20817 0.96709 0.97714 0.96059 1.21038 0.98652 0.97990 0.92228 1.21102 0.97649 0.99791 0.95996 1.21041 0.96525 0.96826 0.99031 1.20498 1.00598 1.00324 0.91882 1.20447 0.96522 0.96799 0.93908 0.92563 0.92234 0.92294 0.92249 0.91905 0.92354 0.89167 0.89370 0.75452 0.86068 0.86372 0.94794 0.94901 0.92522 0.84397 0.85924 0.86208 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.32 37.16 0.31 -0.68 16 2 C -0.03 -0.24 0.89 -154.49 -0.14 -0.38 16 3 C -0.14 -1.15 8.47 37.16 0.31 -0.83 16 4 C -0.12 -1.08 5.76 -25.18 -0.14 -1.23 16 5 C 0.19 2.28 3.28 -68.04 -0.22 2.06 16 6 H 0.10 1.10 7.24 -51.93 -0.38 0.72 16 7 N -1.11 -14.64 5.38 -4.99 -0.03 -14.66 16 8 S 2.59 45.72 5.39 -107.50 -0.58 45.14 16 9 O -0.96 -19.17 16.38 -57.54 -0.94 -20.12 16 10 O -0.97 -20.20 18.08 -57.54 -1.04 -21.24 16 11 C -0.59 -11.01 5.91 37.16 0.22 -10.79 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.11 -1.44 5.77 -104.20 -0.60 -2.04 16 22 C -0.08 -1.12 9.75 -39.54 -0.39 -1.50 16 23 C -0.13 -1.51 10.05 -39.62 -0.40 -1.90 16 24 C -0.12 -1.20 10.05 -39.62 -0.40 -1.60 16 25 C -0.11 -1.19 9.76 -39.54 -0.39 -1.57 16 26 C -0.08 -0.84 4.92 -104.21 -0.51 -1.35 16 27 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.55 6.09 -51.93 -0.32 0.23 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 35 H 0.41 4.71 6.76 -34.47 -0.23 4.47 16 36 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 37 H 0.12 1.94 7.48 -51.92 -0.39 1.55 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 2.10 6.91 -52.49 -0.36 1.74 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.95 7.87 -52.49 -0.41 0.54 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -34.45 367.00 -10.90 -45.35 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.66 Total: 3.89 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: -2.89 Total: -34.29 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.71 Total: -40.31 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.98 Total: -41.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 45.72 SS G_CDS: -0.58 Total: 45.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.45 -10.90 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126003747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.211 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds