Wall clock time and date at job start Tue Mar 31 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.26645 * 2 1 4 4 C 1.54602 * 110.28373 * 237.82989 * 2 1 3 5 5 C 1.54353 * 102.27150 * 214.71923 * 4 2 1 6 6 H 1.08996 * 110.30319 * 145.33850 * 5 4 2 7 7 N 1.46500 * 110.30069 * 267.39571 * 5 4 2 8 8 S 1.65608 * 119.99645 * 213.62625 * 7 5 4 9 9 O 1.42102 * 104.27540 * 308.92809 * 8 7 5 10 10 O 1.42095 * 104.27707 * 181.07170 * 8 7 5 11 11 C 1.81396 * 104.44869 * 64.99969 * 8 7 5 12 12 C 1.53004 * 109.47142 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.47211 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.51374 * 105.25417 * 26.36491 * 5 4 2 22 22 C 1.38494 * 130.38907 * 162.75968 * 21 5 4 23 23 C 1.38107 * 120.21501 * 179.97438 * 22 21 5 24 24 C 1.38255 * 119.93323 * 0.02821 * 23 22 21 25 25 C 1.38104 * 119.93385 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75792 * 342.76297 * 21 5 4 27 27 H 1.09001 * 109.47045 * 299.38003 * 1 2 3 28 28 H 1.09001 * 109.46937 * 59.37839 * 1 2 3 29 29 H 1.08999 * 109.47149 * 179.37750 * 1 2 3 30 30 H 1.08999 * 109.46635 * 180.61921 * 3 2 1 31 31 H 1.09001 * 109.47065 * 300.61633 * 3 2 1 32 32 H 1.08995 * 109.46922 * 60.61958 * 3 2 1 33 33 H 1.09001 * 110.90148 * 96.52687 * 4 2 1 34 34 H 1.08993 * 110.85432 * 332.89127 * 4 2 1 35 35 H 0.96992 * 120.00581 * 33.62388 * 7 5 4 36 36 H 1.09000 * 109.47615 * 59.99959 * 11 8 7 37 37 H 1.09007 * 109.47380 * 299.99639 * 11 8 7 38 38 H 1.09000 * 109.47211 * 59.99329 * 12 11 8 39 39 H 1.09007 * 109.46376 * 299.99872 * 12 11 8 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.89469 * 359.97438 * 22 21 5 42 42 H 1.08004 * 120.03059 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.03023 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.88909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4353 0.0000 4 6 2.0660 -0.7721 -1.2275 5 6 3.3426 -1.4343 -0.6668 6 1 3.4918 -2.4134 -1.1218 7 7 4.5071 -0.5791 -0.9091 8 16 5.9867 -1.2604 -1.2081 9 8 6.1663 -2.1879 -0.1466 10 8 6.8586 -0.1495 -1.3656 11 6 5.7738 -2.1311 -2.7851 12 6 7.0882 -2.8108 -3.1740 13 6 6.9115 -3.5336 -4.4844 14 1 5.9570 -3.5108 -4.9892 15 6 7.9666 -4.2291 -5.0358 16 7 9.1288 -4.2570 -4.4209 17 14 7.7454 -5.1315 -6.6563 18 1 8.0818 -4.2209 -7.7800 19 1 8.6436 -6.3136 -6.6913 20 1 6.3349 -5.5775 -6.7860 21 6 3.0966 -1.5779 0.8199 22 6 3.7337 -2.3673 1.7628 23 6 3.3322 -2.3330 3.0837 24 6 2.2905 -1.5086 3.4669 25 6 1.6540 -0.7208 2.5281 26 6 2.0552 -0.7538 1.2030 27 1 -0.3633 0.5042 0.8955 28 1 -0.3633 0.5235 -0.8844 29 1 -0.3633 -1.0276 -0.0112 30 1 3.1498 1.4201 -0.0111 31 1 1.6949 1.9575 -0.8844 32 1 1.7129 1.9508 0.8955 33 1 2.3094 -0.0886 -2.0409 34 1 1.3501 -1.5261 -1.5545 35 1 4.4117 0.3860 -0.8945 36 1 5.4905 -1.4175 -3.5589 37 1 4.9925 -2.8842 -2.6818 38 1 7.3711 -3.5244 -2.4001 39 1 7.8698 -2.0579 -3.2771 40 1 9.8710 -4.7466 -4.8086 41 1 4.5473 -3.0118 1.4641 42 1 3.8314 -2.9495 3.8166 43 1 1.9749 -1.4809 4.4994 44 1 0.8400 -0.0774 2.8282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126003747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:07 Heat of formation + Delta-G solvation = -87.115434 kcal Electronic energy + Delta-G solvation = -25728.673919 eV Core-core repulsion = 22157.128837 eV Total energy + Delta-G solvation = -3571.545082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59640 -38.14051 -37.72881 -36.99114 -35.89733 -35.52111 -33.13134 -31.94613 -30.85059 -29.19865 -28.09363 -27.59321 -24.73017 -23.64452 -23.54243 -21.96598 -20.44293 -20.11474 -19.11764 -18.34823 -17.87144 -17.05079 -16.65247 -16.52659 -16.26486 -16.01987 -15.93481 -15.19293 -14.94941 -14.61968 -14.57885 -14.47672 -14.07858 -13.74051 -13.67740 -13.32856 -13.17610 -13.09582 -13.02552 -12.93547 -12.89408 -12.77918 -12.75662 -12.36764 -12.25203 -12.12677 -12.04150 -11.82112 -11.71711 -11.39108 -11.36826 -11.13561 -10.64673 -10.46880 -9.70685 -9.51501 -8.25854 -6.40003 -0.69861 0.43140 0.52810 1.41299 1.43148 1.54260 1.86846 2.38289 2.80242 2.89433 3.07739 3.27927 3.39029 3.51369 3.90438 3.97527 4.05942 4.10869 4.12115 4.25056 4.26092 4.33609 4.44059 4.61578 4.65943 4.74129 4.76488 4.87644 4.99060 5.04326 5.07548 5.08102 5.20380 5.22889 5.26645 5.28749 5.31674 5.37035 5.47804 5.61898 5.68036 5.68459 5.80100 6.05780 6.10253 6.16611 6.73867 7.30352 8.86497 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.003350 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.477833 B = 8355.220396 C = 8732.710261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.115 4.115 5 C 0.180 3.820 6 H 0.097 0.903 7 N -1.095 6.095 8 S 2.612 3.388 9 O -0.989 6.989 10 O -1.002 7.002 11 C -0.586 4.586 12 C 0.021 3.979 13 C -0.538 4.538 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.256 1.256 21 C -0.134 4.134 22 C -0.111 4.111 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.077 4.077 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.421 0.579 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.006 0.994 39 H 0.004 0.996 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.148 0.852 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 9.460 10.634 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.154 4.154 5 C 0.073 3.927 6 H 0.115 0.885 7 N -0.856 5.856 8 S 2.709 3.291 9 O -0.978 6.978 10 O -0.993 6.993 11 C -0.718 4.718 12 C -0.018 4.018 13 C -0.577 4.577 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.180 1.180 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.158 4.158 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.077 4.077 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.259 0.741 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.165 0.835 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.326 9.308 11.196 25.822 hybrid contribution 0.606 -0.561 -0.902 1.223 sum -20.720 8.748 10.293 24.734 Atomic orbital electron populations 1.21808 0.91943 1.02328 1.02932 1.20209 0.96916 0.94864 0.90554 1.21927 1.00407 0.94078 1.03258 1.22921 0.94318 1.00557 0.97590 1.20368 0.86856 0.94249 0.91208 0.88535 1.55533 1.24767 1.17570 1.87726 1.04720 0.73055 0.74096 0.77243 1.93499 1.84992 1.66352 1.52979 1.93496 1.64999 1.52597 1.88186 1.30333 1.07869 1.13527 1.20077 1.18817 0.89996 0.95117 0.97898 1.21520 0.98368 1.31799 1.05987 0.90425 1.26130 0.94747 0.97409 1.02019 1.70106 1.03005 1.43181 1.41189 0.85307 0.78811 0.77776 0.78334 1.19599 1.20954 1.17987 1.20975 0.97738 0.98510 0.96378 1.21045 0.99073 0.99084 0.93800 1.21305 0.98497 1.00595 0.95442 1.21385 0.95500 0.95772 1.00554 1.20872 1.00891 1.00144 0.91547 1.20791 0.95700 0.96176 0.95065 0.91863 0.90814 0.92499 0.93642 0.90111 0.91871 0.87605 0.87773 0.74110 0.83668 0.83930 0.97531 0.97760 0.92427 0.87119 0.84988 0.83451 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.32 71.98 0.60 -0.83 16 2 C -0.03 -0.38 0.89 -52.17 -0.05 -0.42 16 3 C -0.14 -1.91 8.47 71.98 0.61 -1.30 16 4 C -0.12 -1.75 5.76 31.60 0.18 -1.57 16 5 C 0.18 4.09 3.28 44.92 0.15 4.23 16 6 H 0.10 2.14 7.24 -2.39 -0.02 2.13 16 7 N -1.10 -28.05 5.38 -169.70 -0.91 -28.96 16 8 S 2.61 94.44 5.39 -56.49 -0.30 94.14 16 9 O -0.99 -41.38 16.38 -127.65 -2.09 -43.47 16 10 O -1.00 -42.97 18.08 -127.65 -2.31 -45.28 16 11 C -0.59 -21.84 5.91 71.98 0.43 -21.42 16 12 C 0.02 1.08 4.98 29.85 0.15 1.23 16 13 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 14 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 15 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 16 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 17 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 C -0.13 -3.41 5.77 -19.59 -0.11 -3.53 16 22 C -0.11 -3.21 9.75 22.30 0.22 -2.99 16 23 C -0.14 -3.33 10.05 22.24 0.22 -3.11 16 24 C -0.11 -2.16 10.05 22.24 0.22 -1.94 16 25 C -0.12 -2.11 9.76 22.30 0.22 -1.90 16 26 C -0.08 -1.55 4.92 -19.60 -0.10 -1.65 16 27 H 0.06 0.60 7.92 -2.39 -0.02 0.59 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.04 0.74 6.09 -2.39 -0.01 0.73 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.30 7.85 -2.39 -0.02 1.28 16 34 H 0.10 1.29 7.91 -2.39 -0.02 1.27 16 35 H 0.42 9.18 6.76 -96.75 -0.65 8.53 16 36 H 0.15 4.67 8.14 -2.39 -0.02 4.65 16 37 H 0.14 4.56 7.48 -2.39 -0.02 4.54 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.11 3.69 6.91 -2.91 -0.02 3.67 16 42 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.14 1.79 7.87 -2.91 -0.02 1.77 16 Total: -1.00 -77.13 367.00 0.47 -76.66 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.34 Total: 23.03 kcal Atomic # 6 Polarization: -67.84 SS G_CDS: 3.43 Total: -64.41 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -0.63 Total: -85.80 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -4.40 Total: -88.75 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 94.44 SS G_CDS: -0.30 Total: 94.14 kcal Total: -77.13 0.47 -76.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126003747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.453 kcal (2) G-P(sol) polarization free energy of solvation -77.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds