Wall clock time and date at job start Tue Mar 31 2020 14:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38413 * 119.92526 * 2 1 4 4 C 1.38369 * 120.31784 * 179.97438 * 3 2 1 5 5 C 1.37938 * 120.15579 * 359.76788 * 4 3 2 6 6 C 1.50695 * 120.08392 * 180.25874 * 5 4 3 7 7 C 1.39691 * 119.83761 * 0.50609 * 5 4 3 8 8 C 1.47727 * 120.15159 * 179.74563 * 7 5 4 9 9 O 1.21555 * 120.00309 * 353.53393 * 8 7 5 10 10 C 1.47731 * 119.99724 * 173.54102 * 8 7 5 11 11 C 1.39376 * 120.21861 * 103.22674 * 10 8 7 12 12 C 1.38129 * 119.98917 * 179.72300 * 11 10 8 13 13 C 1.38458 * 120.43892 * 359.97438 * 12 11 10 14 14 C 1.38148 * 120.44525 * 0.02562 * 13 12 11 15 15 C 1.39339 * 119.99386 * 359.95764 * 14 13 12 16 16 C 1.47705 * 120.21790 * 180.02562 * 15 14 13 17 17 O 1.21603 * 120.00332 * 183.22918 * 16 15 14 18 18 N 1.34774 * 120.00060 * 3.23644 * 16 15 14 19 19 C 1.36648 * 120.00452 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99354 * 359.97438 * 19 18 16 21 21 C 1.39214 * 120.00302 * 179.97438 * 19 18 16 22 22 N 1.31256 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47139 * 89.99758 * 23 21 19 25 25 H 1.48501 * 109.46836 * 209.99674 * 23 21 19 26 26 H 1.48494 * 109.47182 * 329.99860 * 23 21 19 27 27 C 1.37899 * 119.92190 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47421 * 270.02229 * 1 2 3 29 29 H 1.09002 * 109.47157 * 30.02040 * 1 2 3 30 30 H 1.09004 * 109.46940 * 150.01921 * 1 2 3 31 31 H 1.08003 * 119.83934 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.92871 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47048 * 262.64043 * 6 5 4 34 34 H 1.09004 * 109.47252 * 22.63720 * 6 5 4 35 35 H 1.08996 * 109.47918 * 142.64417 * 6 5 4 36 36 H 1.07997 * 120.00992 * 359.74389 * 11 10 8 37 37 H 1.08000 * 119.78069 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.78076 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.00636 * 179.97438 * 14 13 12 40 40 H 0.97005 * 119.99928 * 359.97438 * 18 16 15 41 41 H 0.96992 * 119.99920 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.07659 * 0.04609 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1996 0.0000 4 6 3.5811 1.2091 0.0005 5 6 4.2822 0.0212 0.0059 6 6 5.7891 0.0334 0.0124 7 6 3.5920 -1.1933 0.0001 8 6 4.3359 -2.4696 0.0001 9 8 5.5461 -2.4677 -0.1134 10 6 3.6089 -3.7482 0.1379 11 6 3.3931 -4.5562 -0.9770 12 6 2.7177 -5.7535 -0.8418 13 6 2.2518 -6.1599 0.3971 14 6 2.4557 -5.3732 1.5142 15 6 3.1349 -4.1621 1.3988 16 6 3.3562 -3.3174 2.5900 17 8 3.8973 -2.2344 2.4755 18 7 2.9584 -3.7468 3.8040 19 6 3.1635 -2.9656 4.9062 20 1 3.6448 -2.0041 4.8045 21 6 2.7521 -3.4090 6.1601 22 7 2.1668 -4.5773 6.2835 23 14 3.0332 -2.3413 7.6669 24 1 1.8601 -1.4539 7.8705 25 1 3.2124 -3.2067 8.8603 26 1 4.2505 -1.5145 7.4676 27 6 2.1948 -1.1952 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6536 2.1327 -0.0004 32 1 4.1135 2.1487 0.0009 33 1 6.1579 -0.0973 -1.0050 34 1 6.1431 0.9856 0.4076 35 1 6.1565 -0.7792 0.6391 36 1 3.7541 -4.2464 -1.9466 37 1 2.5520 -6.3767 -1.7081 38 1 1.7247 -7.0980 0.4907 39 1 2.0888 -5.6969 2.4770 40 1 2.5265 -4.6106 3.8954 41 1 1.8798 -4.8861 7.1571 42 1 1.6548 -2.1305 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126785052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:22 Heat of formation + Delta-G solvation = -23.876020 kcal Electronic energy + Delta-G solvation = -27141.710917 eV Core-core repulsion = 23437.464150 eV Total energy + Delta-G solvation = -3704.246767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27648 -38.95336 -37.76716 -37.25368 -34.20799 -33.42149 -31.89405 -31.58974 -30.52739 -30.25558 -28.91014 -25.64227 -24.95006 -24.02279 -23.03609 -22.59895 -20.79388 -19.83034 -19.16794 -18.15735 -16.89142 -16.35449 -15.64809 -15.28952 -15.20010 -15.00600 -14.71723 -14.27544 -14.08245 -13.92047 -13.72779 -13.65689 -13.44143 -13.21678 -12.72288 -12.59107 -12.52579 -12.23590 -12.10897 -11.75779 -11.69090 -11.45862 -11.34045 -11.24738 -11.19616 -11.13752 -10.76241 -10.49579 -10.36115 -9.71170 -9.09179 -8.75199 -8.72277 -8.59697 -8.40188 -8.16967 -8.10220 -6.65571 -3.95274 1.10590 1.22057 1.47307 1.69375 2.85921 3.08639 3.16827 3.23083 3.56786 4.01803 4.07837 4.33106 4.43040 4.73254 4.99835 5.04900 5.08874 5.13085 5.20455 5.25951 5.31753 5.42448 5.47456 5.65450 5.74554 5.77002 5.78515 5.88554 5.91451 5.99406 6.06859 6.08899 6.18140 6.27918 6.31275 6.52448 6.54082 6.62801 6.64542 6.67020 6.80077 6.96611 7.07106 7.26233 7.34701 7.86365 7.98996 8.41018 8.97370 9.31745 9.87819 10.51027 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.005331 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.342996 B = 5250.698338 C = 6555.648088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.096 4.096 4 C -0.135 4.135 5 C -0.028 4.028 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.471 3.529 9 O -0.451 6.451 10 C -0.111 4.111 11 C -0.095 4.095 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.064 4.064 16 C 0.452 3.548 17 O -0.578 6.578 18 N -0.534 5.534 19 C -0.291 4.291 20 H 0.109 0.891 21 C 0.025 3.975 22 N -0.885 5.885 23 Si 0.934 3.066 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.266 1.266 27 C -0.061 4.061 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 2.392 -13.293 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.114 4.114 4 C -0.153 4.153 5 C -0.028 4.028 6 C -0.173 4.173 7 C -0.115 4.115 8 C 0.350 3.650 9 O -0.328 6.328 10 C -0.114 4.114 11 C -0.113 4.113 12 C -0.143 4.143 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.068 4.068 16 C 0.241 3.759 17 O -0.465 6.465 18 N -0.167 5.167 19 C -0.421 4.421 20 H 0.127 0.873 21 C -0.179 4.179 22 N -0.524 5.524 23 Si 0.760 3.240 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.191 1.191 27 C -0.079 4.079 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.705 3.012 -13.178 13.786 hybrid contribution -0.396 -0.239 1.137 1.228 sum -3.101 2.773 -12.041 12.739 Atomic orbital electron populations 1.20739 0.91242 1.02224 1.02418 1.19740 0.96007 0.92987 1.02187 1.21083 0.94125 0.97249 0.98938 1.20907 0.94044 0.97269 1.03090 1.20009 0.96461 0.91807 0.94552 1.21015 0.90733 1.02942 1.02644 1.19947 0.93790 0.93564 1.04234 1.20135 0.87728 0.87523 0.69619 1.90516 1.15585 1.89128 1.37528 1.20281 1.00690 0.96767 0.93657 1.20967 0.98845 0.94235 0.97224 1.21056 0.99247 0.96348 0.97618 1.21176 0.99512 0.99546 0.92456 1.21415 0.98292 0.93687 0.99365 1.20440 0.97554 0.95296 0.93503 1.17680 0.87268 0.87918 0.83049 1.90647 1.48733 1.22731 1.84408 1.41797 1.50145 1.19314 1.05480 1.19854 1.35831 1.02173 0.84223 0.87283 1.25414 0.96291 0.96622 0.99559 1.69532 1.38137 1.18632 1.26142 0.85784 0.79281 0.79285 0.79652 1.20065 1.20617 1.19082 1.21122 0.92983 0.97728 0.96060 0.91165 0.91891 0.91747 0.86262 0.86027 0.91382 0.92708 0.88804 0.85738 0.85737 0.85671 0.85028 0.77161 0.91274 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.00 0.36 -0.95 16 2 C -0.11 -1.67 5.87 -104.68 -0.61 -2.28 16 3 C -0.10 -1.38 9.69 -39.47 -0.38 -1.76 16 4 C -0.14 -2.07 9.66 -39.64 -0.38 -2.45 16 5 C -0.03 -0.50 5.92 -104.19 -0.62 -1.12 16 6 C -0.12 -1.97 8.69 36.00 0.31 -1.65 16 7 C -0.11 -2.18 4.37 -104.93 -0.46 -2.64 16 8 C 0.47 9.52 4.55 -31.83 -0.14 9.38 16 9 O -0.45 -9.78 14.14 5.32 0.08 -9.71 16 10 C -0.11 -2.07 4.26 -104.58 -0.45 -2.52 16 11 C -0.09 -1.40 9.78 -39.20 -0.38 -1.78 16 12 C -0.12 -1.57 10.03 -39.54 -0.40 -1.97 16 13 C -0.11 -1.46 10.03 -39.53 -0.40 -1.86 16 14 C -0.11 -1.81 9.53 -39.21 -0.37 -2.19 16 15 C -0.06 -1.28 5.89 -104.61 -0.62 -1.90 16 16 C 0.45 11.01 7.69 -12.39 -0.10 10.92 16 17 O -0.58 -15.54 12.81 5.28 0.07 -15.47 16 18 N -0.53 -13.45 5.22 -11.89 -0.06 -13.51 16 19 C -0.29 -7.91 9.68 -15.04 -0.15 -8.06 16 20 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 21 C 0.03 0.65 5.50 -17.44 -0.10 0.56 16 22 N -0.89 -23.01 13.04 55.51 0.72 -22.28 16 23 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 C -0.06 -1.06 9.10 -39.15 -0.36 -1.41 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.09 1.87 5.94 -51.93 -0.31 1.57 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 2.16 6.41 -52.49 -0.34 1.82 16 40 H 0.39 9.36 5.94 -40.82 -0.24 9.12 16 41 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 42 H 0.12 2.05 7.15 -52.49 -0.38 1.67 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -31.37 358.01 -9.05 -40.41 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.99 Total: 13.49 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -5.23 Total: -13.68 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.66 Total: -35.79 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.14 Total: -25.18 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.37 -9.05 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126785052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.538 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds