Wall clock time and date at job start Tue Mar 31 2020 14:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38413 * 119.92526 * 2 1 4 4 C 1.38369 * 120.31784 * 179.97438 * 3 2 1 5 5 C 1.37938 * 120.15579 * 359.76788 * 4 3 2 6 6 C 1.50695 * 120.08392 * 180.25874 * 5 4 3 7 7 C 1.39691 * 119.83761 * 0.50609 * 5 4 3 8 8 C 1.47727 * 120.15159 * 179.74563 * 7 5 4 9 9 O 1.21555 * 120.00309 * 353.53393 * 8 7 5 10 10 C 1.47731 * 119.99724 * 173.54102 * 8 7 5 11 11 C 1.39376 * 120.21861 * 103.22674 * 10 8 7 12 12 C 1.38129 * 119.98917 * 179.72300 * 11 10 8 13 13 C 1.38458 * 120.43892 * 359.97438 * 12 11 10 14 14 C 1.38148 * 120.44525 * 0.02562 * 13 12 11 15 15 C 1.39339 * 119.99386 * 359.95764 * 14 13 12 16 16 C 1.47705 * 120.21790 * 180.02562 * 15 14 13 17 17 O 1.21603 * 120.00332 * 183.22918 * 16 15 14 18 18 N 1.34774 * 120.00060 * 3.23644 * 16 15 14 19 19 C 1.36648 * 120.00452 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99354 * 359.97438 * 19 18 16 21 21 C 1.39214 * 120.00302 * 179.97438 * 19 18 16 22 22 N 1.31256 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47139 * 89.99758 * 23 21 19 25 25 H 1.48501 * 109.46836 * 209.99674 * 23 21 19 26 26 H 1.48494 * 109.47182 * 329.99860 * 23 21 19 27 27 C 1.37899 * 119.92190 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47421 * 270.02229 * 1 2 3 29 29 H 1.09002 * 109.47157 * 30.02040 * 1 2 3 30 30 H 1.09004 * 109.46940 * 150.01921 * 1 2 3 31 31 H 1.08003 * 119.83934 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.92871 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47048 * 262.64043 * 6 5 4 34 34 H 1.09004 * 109.47252 * 22.63720 * 6 5 4 35 35 H 1.08996 * 109.47918 * 142.64417 * 6 5 4 36 36 H 1.07997 * 120.00992 * 359.74389 * 11 10 8 37 37 H 1.08000 * 119.78069 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.78076 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.00636 * 179.97438 * 14 13 12 40 40 H 0.97005 * 119.99928 * 359.97438 * 18 16 15 41 41 H 0.96992 * 119.99920 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.07659 * 0.04609 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1996 0.0000 4 6 3.5811 1.2091 0.0005 5 6 4.2822 0.0212 0.0059 6 6 5.7891 0.0334 0.0124 7 6 3.5920 -1.1933 0.0001 8 6 4.3359 -2.4696 0.0001 9 8 5.5461 -2.4677 -0.1134 10 6 3.6089 -3.7482 0.1379 11 6 3.3931 -4.5562 -0.9770 12 6 2.7177 -5.7535 -0.8418 13 6 2.2518 -6.1599 0.3971 14 6 2.4557 -5.3732 1.5142 15 6 3.1349 -4.1621 1.3988 16 6 3.3562 -3.3174 2.5900 17 8 3.8973 -2.2344 2.4755 18 7 2.9584 -3.7468 3.8040 19 6 3.1635 -2.9656 4.9062 20 1 3.6448 -2.0041 4.8045 21 6 2.7521 -3.4090 6.1601 22 7 2.1668 -4.5773 6.2835 23 14 3.0332 -2.3413 7.6669 24 1 1.8601 -1.4539 7.8705 25 1 3.2124 -3.2067 8.8603 26 1 4.2505 -1.5145 7.4676 27 6 2.1948 -1.1952 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6536 2.1327 -0.0004 32 1 4.1135 2.1487 0.0009 33 1 6.1579 -0.0973 -1.0050 34 1 6.1431 0.9856 0.4076 35 1 6.1565 -0.7792 0.6391 36 1 3.7541 -4.2464 -1.9466 37 1 2.5520 -6.3767 -1.7081 38 1 1.7247 -7.0980 0.4907 39 1 2.0888 -5.6969 2.4770 40 1 2.5265 -4.6106 3.8954 41 1 1.8798 -4.8861 7.1571 42 1 1.6548 -2.1305 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126785052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:21 Heat of formation + Delta-G solvation = -41.282836 kcal Electronic energy + Delta-G solvation = -27142.465733 eV Core-core repulsion = 23437.464150 eV Total energy + Delta-G solvation = -3705.001583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70982 -40.40368 -39.32262 -38.73621 -36.15949 -34.63720 -33.64513 -33.02081 -31.98834 -31.50898 -30.08599 -27.40955 -26.29537 -25.34523 -24.49183 -23.85966 -22.09878 -21.42177 -20.68803 -19.95881 -18.44495 -17.78372 -17.00399 -16.87973 -16.51209 -16.43198 -16.20217 -15.77482 -15.69108 -15.54426 -15.11988 -14.99108 -14.90049 -14.40410 -14.27907 -13.89130 -13.73980 -13.60288 -13.46099 -13.40714 -12.98093 -12.96828 -12.70959 -12.62294 -12.48747 -12.43346 -12.23251 -12.16415 -11.97071 -11.62157 -10.63071 -10.42037 -10.17181 -10.00026 -9.89636 -9.78397 -9.38057 -8.59896 -6.01993 -0.24572 -0.11495 0.22894 0.43767 1.35360 1.36949 1.46834 1.49825 2.05560 2.22195 2.72559 2.80092 3.00591 3.11124 3.25185 3.78207 3.86330 3.91487 4.03162 4.06659 4.07297 4.21315 4.31063 4.42460 4.47864 4.51239 4.66930 4.71401 4.75138 4.78052 4.82545 4.87650 4.91618 5.06949 5.12835 5.28192 5.29715 5.31590 5.34470 5.38837 5.42887 5.60288 5.65991 5.84808 5.91665 6.05384 6.46651 6.50542 6.99459 7.39084 7.96817 8.57464 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.005331 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.342996 B = 5250.698338 C = 6555.648088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.116 4.116 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.057 4.057 6 C -0.110 4.110 7 C -0.144 4.144 8 C 0.461 3.539 9 O -0.484 6.484 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.093 4.093 13 C -0.097 4.097 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.454 3.546 17 O -0.611 6.611 18 N -0.547 5.547 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.907 5.907 23 Si 0.994 3.006 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.276 1.276 27 C -0.076 4.076 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.129 0.871 40 H 0.397 0.603 41 H 0.283 0.717 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 1.946 -15.139 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.154 4.154 5 C -0.057 4.057 6 C -0.166 4.166 7 C -0.145 4.145 8 C 0.343 3.657 9 O -0.362 6.362 10 C -0.129 4.129 11 C -0.114 4.114 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.103 4.103 16 C 0.244 3.756 17 O -0.499 6.499 18 N -0.182 5.182 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.207 4.207 22 N -0.546 5.546 23 Si 0.816 3.184 24 H -0.191 1.191 25 H -0.190 1.190 26 H -0.200 1.200 27 C -0.095 4.095 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.186 0.814 39 H 0.147 0.853 40 H 0.233 0.767 41 H 0.093 0.907 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.711 2.537 -15.042 15.966 hybrid contribution 0.200 -0.146 1.450 1.471 sum -4.511 2.392 -13.592 14.520 Atomic orbital electron populations 1.20794 0.88759 1.04159 1.02614 1.20211 0.97926 0.92559 1.00884 1.21566 0.93972 0.98478 0.96954 1.21288 0.94827 0.97414 1.01892 1.20327 0.96966 0.92662 0.95758 1.20906 0.90724 1.02410 1.02557 1.20108 0.94709 0.93619 1.06092 1.20650 0.87611 0.88997 0.68478 1.90482 1.16698 1.89746 1.39321 1.20394 1.01183 0.96883 0.94448 1.21354 0.98701 0.94518 0.96867 1.21662 0.95491 0.95031 0.98947 1.21650 0.98379 1.00168 0.91268 1.21525 0.97661 0.92855 1.00860 1.20120 1.01322 0.96746 0.92155 1.18488 0.85271 0.87821 0.84067 1.90609 1.49464 1.24433 1.85419 1.41741 1.51490 1.19487 1.05459 1.19691 1.38405 1.02159 0.85932 0.90202 1.26116 0.95514 0.97785 1.01326 1.69576 1.38597 1.19425 1.27023 0.84923 0.78863 0.77880 0.76687 1.19121 1.18993 1.20047 1.21244 0.92528 0.98737 0.96953 0.91649 0.88976 0.90906 0.82434 0.83096 0.90329 0.90561 0.92767 0.83470 0.80605 0.81362 0.85343 0.76731 0.90680 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 10.01 71.23 0.71 -1.63 16 2 C -0.12 -3.44 5.87 -19.90 -0.12 -3.55 16 3 C -0.09 -2.47 9.69 22.34 0.22 -2.26 16 4 C -0.14 -4.05 9.66 22.23 0.21 -3.84 16 5 C -0.06 -2.10 5.92 -19.59 -0.12 -2.21 16 6 C -0.11 -3.88 8.69 71.23 0.62 -3.26 16 7 C -0.14 -5.78 4.37 -20.06 -0.09 -5.86 16 8 C 0.46 19.71 4.55 27.29 0.12 19.83 16 9 O -0.48 -22.48 14.14 -3.89 -0.05 -22.54 16 10 C -0.13 -4.82 4.26 -19.84 -0.08 -4.90 16 11 C -0.10 -2.65 9.78 22.52 0.22 -2.43 16 12 C -0.09 -1.93 10.03 22.30 0.22 -1.70 16 13 C -0.10 -2.23 10.03 22.30 0.22 -2.00 16 14 C -0.11 -3.61 9.53 22.51 0.21 -3.39 16 15 C -0.10 -4.14 5.89 -19.86 -0.12 -4.25 16 16 C 0.45 23.58 7.69 86.75 0.67 24.25 16 17 O -0.61 -35.40 12.81 -4.04 -0.05 -35.45 16 18 N -0.55 -29.29 5.22 -309.77 -1.62 -30.91 16 19 C -0.33 -19.20 9.68 84.18 0.81 -18.38 16 20 H 0.08 4.95 7.15 -2.91 -0.02 4.93 16 21 C -0.01 -0.30 5.50 85.01 0.47 0.17 16 22 N -0.91 -48.14 13.04 21.71 0.28 -47.85 16 23 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.08 -2.73 9.10 22.55 0.21 -2.52 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 30 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.15 3.46 8.05 -2.91 -0.02 3.43 16 33 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.08 2.25 8.03 -2.38 -0.02 2.23 16 35 H 0.05 2.36 5.94 -2.39 -0.01 2.34 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.13 4.24 6.41 -2.91 -0.02 4.22 16 40 H 0.40 19.97 5.94 -92.70 -0.55 19.42 16 41 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 42 H 0.12 4.14 7.15 -2.91 -0.02 4.12 16 Total: -1.00 -75.67 358.01 5.50 -70.16 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.51 Total: 39.72 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.40 Total: -17.95 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.33 Total: -78.76 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.11 Total: -57.99 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.67 5.50 -70.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126785052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.882 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds