Wall clock time and date at job start Tue Mar 31 2020 14:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38289 * 119.97266 * 2 1 4 4 C 1.38239 * 120.11110 * 179.76894 * 3 2 1 5 5 C 1.38170 * 120.05909 * 0.50885 * 4 3 2 6 6 C 1.50697 * 120.03068 * 179.76695 * 5 4 3 7 7 N 1.46497 * 109.47557 * 259.72647 * 6 5 4 8 8 C 1.34772 * 120.00312 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99932 * 179.97438 * 8 7 6 11 11 S 1.81007 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.76199 * 100.00164 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.38792 * 119.99926 * 180.02562 * 12 11 10 15 15 N 1.31635 * 120.00453 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47145 * 89.99921 * 16 14 12 18 18 H 1.48497 * 109.47294 * 210.00226 * 16 14 12 19 19 H 1.48506 * 109.47125 * 329.99946 * 16 14 12 20 20 C 1.38714 * 119.93819 * 359.49292 * 5 4 3 21 21 O 1.35905 * 120.05243 * 180.27498 * 20 5 4 22 22 C 1.42894 * 116.99879 * 174.55428 * 21 20 5 23 23 C 1.53000 * 109.47346 * 84.89056 * 22 21 20 24 24 C 1.53003 * 109.47163 * 204.89634 * 22 21 20 25 25 C 1.38124 * 119.97367 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46907 * 269.97554 * 1 2 3 27 27 H 1.08998 * 109.47063 * 29.97651 * 1 2 3 28 28 H 1.09007 * 109.46931 * 149.97992 * 1 2 3 29 29 H 1.07996 * 119.94405 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.97706 * 180.25563 * 4 3 2 31 31 H 1.09006 * 109.47040 * 139.72235 * 6 5 4 32 32 H 1.09004 * 109.47075 * 19.72622 * 6 5 4 33 33 H 0.96996 * 119.99671 * 359.97438 * 7 6 5 34 34 H 1.08994 * 109.47345 * 299.99587 * 10 8 7 35 35 H 1.09005 * 109.46937 * 60.00201 * 10 8 7 36 36 H 0.96997 * 119.99940 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47196 * 324.89516 * 22 21 20 38 38 H 1.08995 * 109.47548 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46986 * 300.00485 * 23 22 21 40 40 H 1.09005 * 109.46597 * 60.00094 * 23 22 21 41 41 H 1.08996 * 109.47195 * 59.99676 * 24 22 21 42 42 H 1.09007 * 109.47069 * 180.02562 * 24 22 21 43 43 H 1.09004 * 109.46405 * 299.99515 * 24 22 21 44 44 H 1.08002 * 120.02844 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5802 1.2013 0.0048 5 6 4.2752 0.0071 -0.0010 6 6 5.7822 0.0115 -0.0010 7 7 6.2713 -0.2268 -1.3612 8 6 7.5964 -0.2662 -1.6036 9 8 8.3841 -0.1038 -0.6958 10 6 8.0994 -0.5119 -3.0027 11 16 9.9095 -0.5064 -3.0028 12 6 10.2164 -0.8067 -4.7117 13 1 9.3894 -0.9293 -5.3954 14 6 11.5208 -0.8857 -5.1791 15 7 12.5288 -0.7368 -4.3457 16 14 11.8462 -1.2034 -6.9909 17 1 11.9291 0.0914 -7.7134 18 1 13.1280 -1.9377 -7.1424 19 1 10.7401 -2.0164 -7.5574 20 6 3.5846 -1.1958 -0.0010 21 8 4.2658 -2.3718 -0.0010 22 6 3.4943 -3.5685 0.1198 23 6 2.9933 -3.9940 -1.2618 24 6 4.3649 -4.6791 0.7110 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1382 0.0090 31 1 6.1479 -0.7746 0.6596 32 1 6.1427 0.9783 0.3505 33 1 5.6414 -0.3570 -2.0872 34 1 7.7387 -1.4786 -3.3540 35 1 7.7341 0.2743 -3.6635 36 1 13.4405 -0.7924 -4.6723 37 1 2.6423 -3.3869 0.7751 38 1 2.4052 -4.9070 -1.1698 39 1 2.3731 -3.2027 -1.6829 40 1 3.8452 -4.1755 -1.9171 41 1 4.7218 -4.3759 1.6953 42 1 3.7765 -5.5921 0.8028 43 1 5.2168 -4.8606 0.0556 44 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150921320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:49 Heat of formation + Delta-G solvation = -66.477212 kcal Electronic energy + Delta-G solvation = -24394.609987 eV Core-core repulsion = 20823.959845 eV Total energy + Delta-G solvation = -3570.650142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78418 -38.94058 -38.15357 -35.09758 -33.47100 -32.44983 -32.37780 -30.21038 -29.74134 -27.86107 -27.51370 -25.46533 -24.41234 -23.64755 -21.31393 -21.05066 -20.23118 -18.10497 -17.72307 -16.54600 -16.37798 -16.05931 -15.61927 -15.20189 -14.93477 -14.77085 -14.74971 -14.36608 -14.06398 -13.82570 -13.52156 -13.20759 -13.09067 -12.95098 -12.74490 -12.65930 -12.55588 -12.48537 -12.26037 -11.93320 -11.73649 -11.49097 -11.40911 -11.02940 -10.99270 -10.97775 -10.84439 -10.72052 -9.76997 -9.42548 -9.02659 -8.97328 -8.72025 -8.33724 -8.16857 -6.44042 -6.17235 -3.87001 0.95723 1.18747 2.92872 3.11219 3.23414 3.25409 3.29932 3.33441 3.50241 3.99244 4.24876 4.34095 4.46177 4.49810 4.59519 4.66610 4.74999 4.82777 4.97504 5.17664 5.19535 5.22020 5.23158 5.26840 5.27729 5.39770 5.43469 5.46924 5.53303 5.55027 5.66635 5.79132 5.83084 5.86537 5.97084 5.99384 6.05173 6.22527 6.24714 6.31900 6.55546 6.75317 7.21038 7.63926 7.87044 8.39766 8.74962 9.27967 10.90200 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.002624 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.806017 B =10666.973395 C =11243.171668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.163 4.163 4 C -0.058 4.058 5 C -0.144 4.144 6 C 0.174 3.826 7 N -0.729 5.729 8 C 0.532 3.468 9 O -0.520 6.520 10 C -0.152 4.152 11 S -0.060 6.060 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.154 3.846 21 O -0.299 6.299 22 C 0.077 3.923 23 C -0.181 4.181 24 C -0.150 4.150 25 C -0.216 4.216 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.580 -2.494 9.631 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.077 4.077 5 C -0.145 4.145 6 C 0.051 3.949 7 N -0.383 5.383 8 C 0.318 3.682 9 O -0.395 6.395 10 C -0.302 4.302 11 S 0.166 5.834 12 C -0.682 4.682 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.108 3.892 21 O -0.212 6.212 22 C 0.021 3.979 23 C -0.238 4.238 24 C -0.208 4.208 25 C -0.234 4.234 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.838 -2.278 11.174 28.243 hybrid contribution -1.306 -0.542 -2.578 2.940 sum -27.144 -2.820 8.596 28.612 Atomic orbital electron populations 1.20829 0.91084 1.02930 1.02465 1.19732 0.95941 0.92550 0.96145 1.20919 0.94004 0.97545 1.05621 1.20970 0.93970 0.96950 0.95762 1.19310 0.95616 0.90708 1.08864 1.19886 0.87827 1.02142 0.85049 1.46000 1.07057 1.75434 1.09824 1.20266 0.81481 0.75697 0.90732 1.90694 1.54942 1.47783 1.46087 1.23520 1.06654 1.04533 0.95539 1.85381 0.91641 1.94074 1.12270 1.22875 0.95003 1.56707 0.93648 0.90988 1.24989 0.95064 0.94761 0.98815 1.70024 0.98999 1.46655 1.34666 0.86176 0.77838 0.78437 0.83086 1.20296 1.20781 1.19725 1.18838 0.90198 0.85850 0.94331 1.86247 1.35793 1.12047 1.87111 1.22462 0.94488 0.83708 0.97233 1.22396 1.02393 1.02024 0.97034 1.21866 1.00646 0.96356 1.01888 1.21130 0.92825 0.98898 1.10581 0.90937 0.91229 0.91556 0.85831 0.85019 0.90652 0.91029 0.76977 0.89347 0.89349 0.92236 0.91096 0.91056 0.91911 0.91022 0.91561 0.90578 0.91033 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.04 -0.36 5.88 -104.65 -0.62 -0.98 16 3 C -0.16 -1.40 9.70 -39.56 -0.38 -1.78 16 4 C -0.06 -0.56 9.66 -39.61 -0.38 -0.95 16 5 C -0.14 -1.64 5.26 -104.47 -0.55 -2.19 16 6 C 0.17 2.40 5.46 -5.20 -0.03 2.37 16 7 N -0.73 -11.07 5.55 -61.47 -0.34 -11.41 16 8 C 0.53 10.61 7.85 -10.99 -0.09 10.52 16 9 O -0.52 -12.42 15.86 5.55 0.09 -12.33 16 10 C -0.15 -3.22 6.16 36.00 0.22 -3.00 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 12 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 13 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 15 N -0.87 -26.58 13.22 55.49 0.73 -25.84 16 16 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.15 1.70 6.57 -39.22 -0.26 1.44 16 21 O -0.30 -3.47 9.03 -19.44 -0.18 -3.65 16 22 C 0.08 0.66 2.85 -26.73 -0.08 0.58 16 23 C -0.18 -1.37 9.17 37.16 0.34 -1.03 16 24 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 25 C -0.22 -1.97 7.89 -39.43 -0.31 -2.28 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 1.11 8.03 -52.48 -0.42 0.69 16 31 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 33 H 0.40 5.18 8.46 -40.82 -0.35 4.83 16 34 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.07 0.51 6.31 -51.93 -0.33 0.18 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.48 6.91 -51.93 -0.36 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.13 0.96 5.43 -52.49 -0.28 0.68 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -35.19 382.61 -9.13 -44.32 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.75 Total: 1.95 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.21 Total: -11.62 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.39 Total: -37.26 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.09 Total: -15.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.19 -9.13 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150921320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.156 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds