Wall clock time and date at job start Tue Mar 31 2020 14:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38289 * 119.97266 * 2 1 4 4 C 1.38239 * 120.11110 * 179.76894 * 3 2 1 5 5 C 1.38170 * 120.05909 * 0.50885 * 4 3 2 6 6 C 1.50697 * 120.03068 * 179.76695 * 5 4 3 7 7 N 1.46497 * 109.47557 * 259.72647 * 6 5 4 8 8 C 1.34772 * 120.00312 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99932 * 179.97438 * 8 7 6 11 11 S 1.81007 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.76199 * 100.00164 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.38792 * 119.99926 * 180.02562 * 12 11 10 15 15 N 1.31635 * 120.00453 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47145 * 89.99921 * 16 14 12 18 18 H 1.48497 * 109.47294 * 210.00226 * 16 14 12 19 19 H 1.48506 * 109.47125 * 329.99946 * 16 14 12 20 20 C 1.38714 * 119.93819 * 359.49292 * 5 4 3 21 21 O 1.35905 * 120.05243 * 180.27498 * 20 5 4 22 22 C 1.42894 * 116.99879 * 174.55428 * 21 20 5 23 23 C 1.53000 * 109.47346 * 84.89056 * 22 21 20 24 24 C 1.53003 * 109.47163 * 204.89634 * 22 21 20 25 25 C 1.38124 * 119.97367 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46907 * 269.97554 * 1 2 3 27 27 H 1.08998 * 109.47063 * 29.97651 * 1 2 3 28 28 H 1.09007 * 109.46931 * 149.97992 * 1 2 3 29 29 H 1.07996 * 119.94405 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.97706 * 180.25563 * 4 3 2 31 31 H 1.09006 * 109.47040 * 139.72235 * 6 5 4 32 32 H 1.09004 * 109.47075 * 19.72622 * 6 5 4 33 33 H 0.96996 * 119.99671 * 359.97438 * 7 6 5 34 34 H 1.08994 * 109.47345 * 299.99587 * 10 8 7 35 35 H 1.09005 * 109.46937 * 60.00201 * 10 8 7 36 36 H 0.96997 * 119.99940 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47196 * 324.89516 * 22 21 20 38 38 H 1.08995 * 109.47548 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46986 * 300.00485 * 23 22 21 40 40 H 1.09005 * 109.46597 * 60.00094 * 23 22 21 41 41 H 1.08996 * 109.47195 * 59.99676 * 24 22 21 42 42 H 1.09007 * 109.47069 * 180.02562 * 24 22 21 43 43 H 1.09004 * 109.46405 * 299.99515 * 24 22 21 44 44 H 1.08002 * 120.02844 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5802 1.2013 0.0048 5 6 4.2752 0.0071 -0.0010 6 6 5.7822 0.0115 -0.0010 7 7 6.2713 -0.2268 -1.3612 8 6 7.5964 -0.2662 -1.6036 9 8 8.3841 -0.1038 -0.6958 10 6 8.0994 -0.5119 -3.0027 11 16 9.9095 -0.5064 -3.0028 12 6 10.2164 -0.8067 -4.7117 13 1 9.3894 -0.9293 -5.3954 14 6 11.5208 -0.8857 -5.1791 15 7 12.5288 -0.7368 -4.3457 16 14 11.8462 -1.2034 -6.9909 17 1 11.9291 0.0914 -7.7134 18 1 13.1280 -1.9377 -7.1424 19 1 10.7401 -2.0164 -7.5574 20 6 3.5846 -1.1958 -0.0010 21 8 4.2658 -2.3718 -0.0010 22 6 3.4943 -3.5685 0.1198 23 6 2.9933 -3.9940 -1.2618 24 6 4.3649 -4.6791 0.7110 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1382 0.0090 31 1 6.1479 -0.7746 0.6596 32 1 6.1427 0.9783 0.3505 33 1 5.6414 -0.3570 -2.0872 34 1 7.7387 -1.4786 -3.3540 35 1 7.7341 0.2743 -3.6635 36 1 13.4405 -0.7924 -4.6723 37 1 2.6423 -3.3869 0.7751 38 1 2.4052 -4.9070 -1.1698 39 1 2.3731 -3.2027 -1.6829 40 1 3.8452 -4.1755 -1.9171 41 1 4.7218 -4.3759 1.6953 42 1 3.7765 -5.5921 0.8028 43 1 5.2168 -4.8606 0.0556 44 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150921320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:48 Heat of formation + Delta-G solvation = -88.783062 kcal Electronic energy + Delta-G solvation = -24395.577242 eV Core-core repulsion = 20823.959845 eV Total energy + Delta-G solvation = -3571.617396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57266 -40.45321 -38.90520 -36.25435 -34.58855 -34.30832 -33.32575 -31.24485 -30.85011 -28.86733 -28.14671 -27.65275 -25.37631 -24.33962 -22.04946 -21.80972 -21.72573 -19.89476 -18.73027 -17.90459 -17.43848 -17.23653 -16.88251 -16.41821 -16.39671 -16.21016 -15.78208 -15.40172 -15.11655 -14.72888 -14.59702 -14.39400 -14.27631 -14.13662 -13.71682 -13.53837 -13.41500 -13.23687 -13.16921 -13.06835 -12.88929 -12.80037 -12.63357 -12.54905 -12.28408 -12.08202 -11.75313 -11.65975 -11.51519 -11.14427 -11.03406 -10.28721 -10.12741 -9.73480 -9.10319 -8.67210 -8.34616 -6.13048 0.20612 0.46816 1.27215 1.42479 1.47051 1.57898 1.61570 2.23731 2.26419 2.31255 2.82499 2.99191 3.33077 3.60727 3.79402 3.81625 3.91921 3.99686 4.03058 4.12054 4.18580 4.25135 4.30022 4.48377 4.52326 4.62295 4.66297 4.71329 4.73167 4.80308 4.83440 4.85307 4.91155 4.95674 5.18922 5.23999 5.25150 5.34951 5.38665 5.41458 5.50246 5.64082 5.88283 6.19779 6.45572 6.52655 7.06237 7.22565 8.74749 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.002624 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.806017 B =10666.973395 C =11243.171668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.041 4.041 3 C -0.165 4.165 4 C -0.061 4.061 5 C -0.163 4.163 6 C 0.180 3.820 7 N -0.704 5.704 8 C 0.534 3.466 9 O -0.566 6.566 10 C -0.127 4.127 11 S -0.148 6.148 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.258 1.258 20 C 0.142 3.858 21 O -0.325 6.325 22 C 0.070 3.930 23 C -0.176 4.176 24 C -0.150 4.150 25 C -0.218 4.218 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.410 0.590 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.986 -2.701 8.308 32.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.183 4.183 4 C -0.079 4.079 5 C -0.165 4.165 6 C 0.057 3.943 7 N -0.357 5.357 8 C 0.320 3.680 9 O -0.445 6.445 10 C -0.279 4.279 11 S 0.079 5.921 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.182 1.182 20 C 0.096 3.904 21 O -0.239 6.239 22 C 0.015 3.985 23 C -0.233 4.233 24 C -0.207 4.207 25 C -0.236 4.236 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.310 -2.487 9.849 31.020 hybrid contribution -0.419 -0.476 -2.068 2.163 sum -29.729 -2.963 7.781 30.873 Atomic orbital electron populations 1.20900 0.88871 1.03993 1.03467 1.20134 0.97571 0.92081 0.94324 1.21217 0.93506 0.98767 1.04784 1.21127 0.94780 0.96631 0.95390 1.19147 0.93802 0.91915 1.11596 1.19848 0.89925 1.01176 0.83388 1.45807 1.05494 1.73191 1.11189 1.20069 0.82670 0.75601 0.89665 1.90680 1.56442 1.50329 1.47059 1.23352 1.01203 1.06235 0.97079 1.85562 0.98589 1.94438 1.13540 1.23197 0.95796 1.56908 0.93526 0.90013 1.26151 0.94616 0.94042 1.04404 1.70189 0.99596 1.47668 1.37329 0.84933 0.78063 0.78759 0.76076 1.19213 1.20196 1.18241 1.19001 0.91090 0.85495 0.94805 1.86220 1.37340 1.13027 1.87345 1.22692 0.94812 0.82794 0.98195 1.22363 1.01914 1.03069 0.95989 1.21901 1.00442 0.97437 1.00923 1.21332 0.91997 1.00112 1.10166 0.89818 0.90128 0.90624 0.83591 0.84162 0.92667 0.91172 0.75393 0.87654 0.87256 0.91960 0.89457 0.88805 0.91825 0.92763 0.92304 0.87990 0.92897 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.01 71.24 0.71 -0.18 16 2 C -0.04 -0.56 5.88 -19.88 -0.12 -0.68 16 3 C -0.16 -2.40 9.70 22.28 0.22 -2.18 16 4 C -0.06 -1.10 9.66 22.25 0.22 -0.88 16 5 C -0.16 -3.65 5.26 -19.77 -0.10 -3.75 16 6 C 0.18 5.06 5.46 85.63 0.47 5.52 16 7 N -0.70 -21.37 5.55 -466.80 -2.59 -23.96 16 8 C 0.53 21.66 7.85 87.66 0.69 22.35 16 9 O -0.57 -28.14 15.86 -3.05 -0.05 -28.18 16 10 C -0.13 -5.42 6.16 71.23 0.44 -4.98 16 11 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 12 C -0.55 -32.01 9.50 67.95 0.65 -31.36 16 13 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 14 C 0.01 0.73 5.49 84.85 0.47 1.19 16 15 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 16 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 C 0.14 3.02 6.57 22.51 0.15 3.17 16 21 O -0.33 -7.52 9.03 -92.49 -0.84 -8.36 16 22 C 0.07 1.13 2.85 30.60 0.09 1.21 16 23 C -0.18 -2.39 9.17 71.98 0.66 -1.73 16 24 C -0.15 -2.30 9.56 71.98 0.69 -1.62 16 25 C -0.22 -3.50 7.89 22.37 0.18 -3.32 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 28 H 0.07 0.47 8.08 -2.38 -0.02 0.45 16 29 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 30 H 0.14 2.19 8.03 -2.91 -0.02 2.17 16 31 H 0.06 1.78 7.85 -2.38 -0.02 1.76 16 32 H 0.07 1.99 8.00 -2.39 -0.02 1.97 16 33 H 0.41 10.33 8.46 -92.71 -0.78 9.55 16 34 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 35 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.09 1.08 6.31 -2.38 -0.02 1.07 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.84 6.91 -2.39 -0.02 0.83 16 40 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.15 1.77 5.43 -2.91 -0.02 1.75 16 Total: -1.00 -78.84 382.61 3.28 -75.55 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.22 Total: 22.22 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 5.39 Total: -17.24 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.30 Total: -80.65 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.88 Total: -36.54 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -78.84 3.28 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150921320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.230 kcal (2) G-P(sol) polarization free energy of solvation -78.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds