Wall clock time and date at job start Tue Mar 31 2020 14:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78968 * 2 1 4 4 C 1.41381 * 106.83845 * 179.79209 * 3 2 1 5 5 C 1.34522 * 106.84325 * 0.37031 * 4 3 2 6 6 C 1.50703 * 125.78963 * 179.89225 * 5 4 3 7 7 H 1.08997 * 108.03424 * 294.20217 * 6 5 4 8 8 C 1.54902 * 107.99616 * 177.43669 * 6 5 4 9 9 C 1.54844 * 110.13747 * 197.04860 * 8 6 5 10 10 C 1.50121 * 110.81718 * 321.12813 * 9 8 6 11 11 C 1.52534 * 105.41221 * 97.68384 * 10 9 8 12 12 C 1.46232 * 114.27788 * 270.59431 * 11 10 9 13 13 N 1.43429 * 108.15970 * 51.05969 * 6 5 4 14 14 C 1.34780 * 120.53658 * 33.05376 * 13 6 5 15 15 O 1.21280 * 119.99957 * 4.20213 * 14 13 6 16 16 C 1.50702 * 119.99778 * 184.19942 * 14 13 6 17 17 S 1.80998 * 109.46807 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99917 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00181 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99472 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47398 * 59.99876 * 22 20 18 24 24 H 1.48496 * 109.47046 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47206 * 299.99686 * 22 20 18 26 26 O 1.34302 * 108.41698 * 359.62508 * 5 4 3 27 27 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47316 * 300.00217 * 1 2 3 29 29 H 1.09002 * 109.47231 * 60.00241 * 1 2 3 30 30 H 1.07998 * 126.58005 * 0.04010 * 3 2 1 31 31 H 1.07996 * 126.57932 * 180.23717 * 4 3 2 32 32 H 1.09001 * 109.35801 * 317.25173 * 8 6 5 33 33 H 1.09002 * 109.36237 * 76.84116 * 8 6 5 34 34 H 1.08998 * 109.20505 * 200.78653 * 9 8 6 35 35 H 1.09002 * 109.20888 * 81.47484 * 9 8 6 36 36 H 1.09002 * 110.25094 * 338.71470 * 10 9 8 37 37 H 1.08998 * 110.25102 * 216.66013 * 10 9 8 38 38 H 1.08999 * 108.51970 * 149.35185 * 11 10 9 39 39 H 1.08998 * 108.51734 * 31.83755 * 11 10 9 40 40 H 1.09007 * 109.84737 * 298.90137 * 12 11 10 41 41 H 1.09003 * 109.90251 * 177.94924 * 12 11 10 42 42 H 1.09001 * 109.47113 * 299.99745 * 16 14 13 43 43 H 1.08992 * 109.47098 * 60.00099 * 16 14 13 44 44 H 0.97006 * 119.99425 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 0.0049 5 6 3.5814 -0.7123 -0.0007 6 6 4.7706 -1.6380 -0.0007 7 1 5.3009 -1.5061 -0.9438 8 6 4.2440 -3.0936 0.0576 9 6 5.3799 -4.0546 0.4866 10 6 6.6829 -3.6551 -0.1429 11 6 7.4150 -2.8433 0.9209 12 6 7.1277 -1.4098 0.8868 13 7 5.6461 -1.2409 1.0637 14 6 5.1472 -0.7243 2.2042 15 8 3.9470 -0.6623 2.3677 16 6 6.0806 -0.2236 3.2762 17 16 5.1145 0.4041 4.6722 18 6 6.4186 0.9082 5.7446 19 1 7.4471 0.7808 5.4410 20 6 6.1239 1.4700 6.9792 21 7 4.8703 1.6256 7.3490 22 14 7.5064 2.0050 8.1158 23 1 8.3316 3.0378 7.4395 24 1 6.9313 2.5689 9.3633 25 1 8.3554 0.8328 8.4485 26 8 2.2924 -1.0895 -0.0004 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9666 2.1204 0.0006 31 1 4.5212 1.2432 0.0098 32 1 3.4282 -3.1541 0.7779 33 1 3.8768 -3.3847 -0.9265 34 1 5.1278 -5.0686 0.1765 35 1 5.4823 -4.0271 1.5714 36 1 6.5030 -3.0433 -1.0269 37 1 7.2616 -4.5403 -0.4065 38 1 8.4874 -2.9848 0.7874 39 1 7.1379 -3.2287 1.9021 40 1 7.4357 -0.9934 -0.0724 41 1 7.6569 -0.9060 1.6957 42 1 6.7176 -1.0410 3.6140 43 1 6.7003 0.5773 2.8733 44 1 4.6644 2.0179 8.2120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154214081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:33 Heat of formation + Delta-G solvation = -13.686712 kcal Electronic energy + Delta-G solvation = -26108.849139 eV Core-core repulsion = 22540.488165 eV Total energy + Delta-G solvation = -3568.360974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31920 -40.11202 -37.41821 -33.78727 -33.63414 -32.74528 -32.41700 -31.07443 -29.43049 -27.23776 -26.26196 -25.46771 -24.08882 -22.40380 -21.30311 -20.51209 -19.97760 -18.68975 -17.73035 -16.91621 -16.48696 -15.76598 -15.57281 -15.25148 -14.79694 -14.68359 -14.51878 -14.07984 -13.96497 -13.65072 -13.34924 -13.06432 -12.88865 -12.83658 -12.69637 -12.45905 -12.43531 -12.20271 -11.72942 -11.70375 -11.49411 -11.12257 -11.03573 -11.03120 -10.81233 -10.72987 -10.68128 -10.51891 -9.79860 -9.61108 -9.20232 -9.04863 -8.57116 -8.19818 -7.67880 -6.47642 -6.20282 -3.90398 2.03579 2.81809 3.06999 3.10836 3.22504 3.23617 3.28517 3.34781 3.64752 4.21483 4.45778 4.55161 4.71933 4.86988 4.89143 5.00203 5.07337 5.14640 5.14891 5.26088 5.36965 5.42771 5.46561 5.49227 5.55535 5.58882 5.64644 5.65974 5.81967 5.85342 5.89729 5.93185 6.01827 6.07741 6.13117 6.20690 6.22237 6.23105 6.31496 6.50933 6.71356 6.93252 7.49953 7.58171 7.60151 8.35820 8.64750 9.24768 10.87041 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.004323 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.131060 B = 6476.160741 C = 8182.096344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.023 4.023 3 C -0.201 4.201 4 C -0.198 4.198 5 C 0.006 3.994 6 C 0.238 3.762 7 H 0.093 0.907 8 C -0.130 4.130 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.146 4.146 12 C 0.117 3.883 13 N -0.614 5.614 14 C 0.531 3.469 15 O -0.490 6.490 16 C -0.148 4.148 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.166 6.166 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -8.288 -19.192 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.220 4.220 4 C -0.217 4.217 5 C -0.045 4.045 6 C 0.133 3.867 7 H 0.111 0.889 8 C -0.169 4.169 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.185 4.185 12 C -0.004 4.004 13 N -0.351 5.351 14 C 0.318 3.682 15 O -0.361 6.361 16 C -0.299 4.299 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 O -0.062 6.062 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.708 -8.414 -18.774 20.586 hybrid contribution 2.452 0.576 0.748 2.628 sum 1.745 -7.839 -18.026 19.734 Atomic orbital electron populations 1.20209 0.85724 1.03436 1.03079 1.22168 0.93571 0.84304 1.07251 1.21363 0.92759 0.98981 1.08887 1.21239 0.97809 0.93726 1.08957 1.22050 0.83159 0.94082 1.05216 1.18812 0.85671 0.91337 0.90870 0.88891 1.22628 0.98697 0.93057 1.02478 1.21561 0.94484 0.98414 1.01190 1.21068 0.96497 0.99836 0.98092 1.20924 1.00966 0.96013 1.00551 1.21103 0.79405 0.96694 1.03220 1.48248 1.06424 1.64659 1.15795 1.20287 0.89333 0.76836 0.81709 1.90746 1.15399 1.53199 1.76800 1.23542 1.02549 1.03488 1.00292 1.85436 1.09876 1.78525 1.09336 1.22824 0.93709 1.47549 1.04323 0.91089 1.24975 0.96297 0.95108 0.97106 1.70013 1.17281 1.41671 1.21334 0.86248 0.81085 0.78937 0.79378 1.19941 1.20813 1.19953 1.83857 1.15955 1.34793 1.71588 0.91069 0.89877 0.90350 0.84225 0.84719 0.90783 0.90825 0.92312 0.91534 0.91311 0.91421 0.91211 0.91067 0.90726 0.88643 0.89539 0.89491 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.39 16 2 C -0.02 -0.36 7.32 -35.62 -0.26 -0.62 16 3 C -0.20 -3.29 10.81 -39.70 -0.43 -3.72 16 4 C -0.20 -3.35 9.11 -39.70 -0.36 -3.71 16 5 C 0.01 0.10 4.06 -35.62 -0.14 -0.04 16 6 C 0.24 3.14 2.05 -69.70 -0.14 3.00 16 7 H 0.09 0.98 6.89 -51.93 -0.36 0.63 16 8 C -0.13 -1.57 5.39 -24.76 -0.13 -1.70 16 9 C -0.12 -1.22 5.65 -27.19 -0.15 -1.38 16 10 C -0.12 -0.97 5.76 -28.40 -0.16 -1.13 16 11 C -0.15 -1.31 5.20 -30.19 -0.16 -1.47 16 12 C 0.12 1.19 5.90 -5.21 -0.03 1.16 16 13 N -0.61 -8.63 2.42 -169.17 -0.41 -9.04 16 14 C 0.53 10.11 6.85 -10.98 -0.08 10.04 16 15 O -0.49 -11.23 13.02 4.79 0.06 -11.17 16 16 C -0.15 -3.02 4.52 36.01 0.16 -2.86 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 O -0.17 -2.82 9.69 4.93 0.05 -2.78 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.07 1.11 7.60 -51.93 -0.39 0.72 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.81 6.83 -51.93 -0.35 0.46 16 36 H 0.07 0.52 6.29 -51.93 -0.33 0.20 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.76 6.93 -51.93 -0.36 0.40 16 40 H 0.07 0.59 8.13 -51.92 -0.42 0.17 16 41 H 0.10 1.00 6.08 -51.93 -0.32 0.68 16 42 H 0.09 1.63 7.85 -51.91 -0.41 1.23 16 43 H 0.09 1.65 7.82 -51.92 -0.41 1.24 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -35.28 361.43 -9.36 -44.64 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.69 Total: 1.70 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.32 Total: -15.80 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.33 Total: -34.67 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.11 Total: -13.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.28 -9.36 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154214081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.953 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds