Wall clock time and date at job start Tue Mar 31 2020 14:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78968 * 2 1 4 4 C 1.41381 * 106.83845 * 179.79209 * 3 2 1 5 5 C 1.34522 * 106.84325 * 0.37031 * 4 3 2 6 6 C 1.50703 * 125.78963 * 179.89225 * 5 4 3 7 7 H 1.08997 * 108.03424 * 294.20217 * 6 5 4 8 8 C 1.54902 * 107.99616 * 177.43669 * 6 5 4 9 9 C 1.54844 * 110.13747 * 197.04860 * 8 6 5 10 10 C 1.50121 * 110.81718 * 321.12813 * 9 8 6 11 11 C 1.52534 * 105.41221 * 97.68384 * 10 9 8 12 12 C 1.46232 * 114.27788 * 270.59431 * 11 10 9 13 13 N 1.43429 * 108.15970 * 51.05969 * 6 5 4 14 14 C 1.34780 * 120.53658 * 33.05376 * 13 6 5 15 15 O 1.21280 * 119.99957 * 4.20213 * 14 13 6 16 16 C 1.50702 * 119.99778 * 184.19942 * 14 13 6 17 17 S 1.80998 * 109.46807 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99917 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00181 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99472 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47398 * 59.99876 * 22 20 18 24 24 H 1.48496 * 109.47046 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47206 * 299.99686 * 22 20 18 26 26 O 1.34302 * 108.41698 * 359.62508 * 5 4 3 27 27 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47316 * 300.00217 * 1 2 3 29 29 H 1.09002 * 109.47231 * 60.00241 * 1 2 3 30 30 H 1.07998 * 126.58005 * 0.04010 * 3 2 1 31 31 H 1.07996 * 126.57932 * 180.23717 * 4 3 2 32 32 H 1.09001 * 109.35801 * 317.25173 * 8 6 5 33 33 H 1.09002 * 109.36237 * 76.84116 * 8 6 5 34 34 H 1.08998 * 109.20505 * 200.78653 * 9 8 6 35 35 H 1.09002 * 109.20888 * 81.47484 * 9 8 6 36 36 H 1.09002 * 110.25094 * 338.71470 * 10 9 8 37 37 H 1.08998 * 110.25102 * 216.66013 * 10 9 8 38 38 H 1.08999 * 108.51970 * 149.35185 * 11 10 9 39 39 H 1.08998 * 108.51734 * 31.83755 * 11 10 9 40 40 H 1.09007 * 109.84737 * 298.90137 * 12 11 10 41 41 H 1.09003 * 109.90251 * 177.94924 * 12 11 10 42 42 H 1.09001 * 109.47113 * 299.99745 * 16 14 13 43 43 H 1.08992 * 109.47098 * 60.00099 * 16 14 13 44 44 H 0.97006 * 119.99425 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 0.0049 5 6 3.5814 -0.7123 -0.0007 6 6 4.7706 -1.6380 -0.0007 7 1 5.3009 -1.5061 -0.9438 8 6 4.2440 -3.0936 0.0576 9 6 5.3799 -4.0546 0.4866 10 6 6.6829 -3.6551 -0.1429 11 6 7.4150 -2.8433 0.9209 12 6 7.1277 -1.4098 0.8868 13 7 5.6461 -1.2409 1.0637 14 6 5.1472 -0.7243 2.2042 15 8 3.9470 -0.6623 2.3677 16 6 6.0806 -0.2236 3.2762 17 16 5.1145 0.4041 4.6722 18 6 6.4186 0.9082 5.7446 19 1 7.4471 0.7808 5.4410 20 6 6.1239 1.4700 6.9792 21 7 4.8703 1.6256 7.3490 22 14 7.5064 2.0050 8.1158 23 1 8.3316 3.0378 7.4395 24 1 6.9313 2.5689 9.3633 25 1 8.3554 0.8328 8.4485 26 8 2.2924 -1.0895 -0.0004 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9666 2.1204 0.0006 31 1 4.5212 1.2432 0.0098 32 1 3.4282 -3.1541 0.7779 33 1 3.8768 -3.3847 -0.9265 34 1 5.1278 -5.0686 0.1765 35 1 5.4823 -4.0271 1.5714 36 1 6.5030 -3.0433 -1.0269 37 1 7.2616 -4.5403 -0.4065 38 1 8.4874 -2.9848 0.7874 39 1 7.1379 -3.2287 1.9021 40 1 7.4357 -0.9934 -0.0724 41 1 7.6569 -0.9060 1.6957 42 1 6.7176 -1.0410 3.6140 43 1 6.7003 0.5773 2.8733 44 1 4.6644 2.0179 8.2120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154214081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:33 Heat of formation + Delta-G solvation = -34.789825 kcal Electronic energy + Delta-G solvation = -26109.764239 eV Core-core repulsion = 22540.488165 eV Total energy + Delta-G solvation = -3569.276074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.53865 -41.31038 -38.63264 -34.87389 -34.65539 -34.58750 -33.96004 -32.10645 -30.91910 -28.38979 -27.63075 -27.19163 -25.12514 -23.48889 -22.47208 -21.48219 -21.14121 -20.16254 -19.40741 -18.34611 -17.68068 -16.96149 -16.88993 -16.72371 -16.51394 -15.86642 -15.71447 -15.56246 -15.02690 -14.85347 -14.64130 -14.42795 -14.07659 -13.87970 -13.77860 -13.68349 -13.53566 -13.40860 -13.18698 -12.99420 -12.86951 -12.71309 -12.63287 -12.54814 -11.98643 -11.77830 -11.56681 -11.48496 -11.30980 -11.13660 -10.98661 -10.53302 -10.25247 -9.75638 -8.91464 -8.67063 -8.35126 -6.13178 0.82060 1.25842 1.42664 1.44982 1.54089 1.63063 1.73836 2.03341 2.24282 2.28549 2.98937 3.22782 3.46884 3.71326 3.80173 3.85913 4.03020 4.06371 4.17044 4.18951 4.24099 4.26958 4.40271 4.44971 4.50706 4.56691 4.62672 4.70623 4.72626 4.87091 4.92933 4.96758 5.01971 5.08693 5.19085 5.28571 5.30497 5.34757 5.39983 5.41843 5.48068 5.65742 5.72569 6.18275 6.23468 6.33899 7.05816 7.22831 8.73915 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.004323 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.131060 B = 6476.160741 C = 8182.096344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.034 4.034 3 C -0.226 4.226 4 C -0.220 4.220 5 C -0.001 4.001 6 C 0.234 3.766 7 H 0.133 0.867 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.111 4.111 11 C -0.145 4.145 12 C 0.110 3.890 13 N -0.599 5.599 14 C 0.530 3.470 15 O -0.539 6.539 16 C -0.120 4.120 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 0.998 3.002 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 O -0.181 6.181 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -9.093 -21.064 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 C -0.245 4.245 4 C -0.239 4.239 5 C -0.052 4.052 6 C 0.129 3.871 7 H 0.150 0.850 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.149 4.149 11 C -0.183 4.183 12 C -0.009 4.009 13 N -0.335 5.335 14 C 0.317 3.683 15 O -0.415 6.415 16 C -0.271 4.271 17 S 0.076 5.924 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 O -0.077 6.077 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.153 0.847 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.029 -9.244 -20.692 22.754 hybrid contribution 1.605 0.769 1.218 2.156 sum 3.634 -8.476 -19.475 21.548 Atomic orbital electron populations 1.20381 0.82919 1.04487 1.04477 1.22964 0.95369 0.83882 1.06181 1.21674 0.93081 0.99920 1.09871 1.21414 0.98126 0.94404 1.09998 1.22603 0.83717 0.94533 1.04389 1.19214 0.84910 0.91263 0.91709 0.85001 1.22592 0.98236 0.92902 1.02579 1.21549 0.95197 0.98791 0.99704 1.21086 0.94975 1.00813 0.97982 1.20893 1.02847 0.94862 0.99712 1.21512 0.76343 0.98022 1.05060 1.48252 1.08535 1.62626 1.14091 1.20063 0.88322 0.77175 0.82745 1.90733 1.17133 1.55556 1.78056 1.23347 1.01766 1.04154 0.97852 1.85633 1.13621 1.79610 1.13517 1.23163 0.93921 1.47552 1.04740 0.89991 1.26123 0.99164 0.94835 0.98914 1.70190 1.19971 1.42781 1.21972 0.85020 0.77383 0.78965 0.76739 1.18556 1.20425 1.18573 1.83862 1.16591 1.35521 1.71764 0.90185 0.89774 0.87489 0.83162 0.84680 0.94722 0.88590 0.90862 0.94230 0.89751 0.89323 0.88305 0.93414 0.87125 0.88948 0.87946 0.87795 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.42 71.24 0.74 -0.74 16 2 C -0.03 -1.10 7.32 24.83 0.18 -0.92 16 3 C -0.23 -7.65 10.81 22.19 0.24 -7.41 16 4 C -0.22 -7.60 9.11 22.19 0.20 -7.40 16 5 C 0.00 -0.05 4.06 24.84 0.10 0.05 16 6 C 0.23 5.80 2.05 45.46 0.09 5.89 16 7 H 0.13 2.29 6.89 -2.39 -0.02 2.27 16 8 C -0.12 -2.87 5.39 31.87 0.17 -2.70 16 9 C -0.11 -2.14 5.65 30.30 0.17 -1.97 16 10 C -0.11 -1.39 5.76 29.51 0.17 -1.22 16 11 C -0.15 -2.10 5.20 28.36 0.15 -1.95 16 12 C 0.11 1.87 5.90 83.58 0.49 2.37 16 13 N -0.60 -16.06 2.42 -807.52 -1.95 -18.01 16 14 C 0.53 20.45 6.85 87.66 0.60 21.05 16 15 O -0.54 -25.85 13.02 -2.29 -0.03 -25.88 16 16 C -0.12 -4.92 4.52 71.24 0.32 -4.60 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -31.56 9.50 67.96 0.65 -30.92 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 22 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 O -0.18 -6.31 9.69 -1.76 -0.02 -6.33 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.15 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.03 1.07 7.60 -2.39 -0.02 1.05 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 0.95 6.83 -2.39 -0.02 0.94 16 36 H 0.08 0.84 6.29 -2.39 -0.01 0.82 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.94 6.93 -2.39 -0.02 0.92 16 40 H 0.11 1.19 8.13 -2.38 -0.02 1.17 16 41 H 0.09 1.67 6.08 -2.39 -0.01 1.65 16 42 H 0.10 3.84 7.85 -2.40 -0.02 3.82 16 43 H 0.10 3.87 7.82 -2.40 -0.02 3.86 16 44 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -81.90 361.43 4.89 -77.00 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.99 Total: 22.90 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 4.75 Total: -29.18 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.66 Total: -74.69 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.21 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -81.90 4.89 -77.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154214081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.214 kcal (2) G-P(sol) polarization free energy of solvation -81.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds