Wall clock time and date at job start Tue Mar 31 2020 14:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34514 * 125.78902 * 2 1 4 4 C 1.41385 * 106.84054 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83945 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78650 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.05729 * 340.97597 * 6 5 4 8 8 C 1.50461 * 109.06787 * 99.99724 * 6 5 4 9 9 C 1.53645 * 109.76057 * 209.96929 * 8 6 5 10 10 C 1.46628 * 112.45699 * 280.53623 * 9 8 6 11 11 C 1.53657 * 112.44212 * 62.69527 * 10 9 8 12 12 C 1.50458 * 109.77839 * 280.57193 * 11 10 9 13 13 N 1.48268 * 109.01255 * 221.98203 * 6 5 4 14 14 C 1.34776 * 120.02379 * 19.97325 * 13 6 5 15 15 O 1.21276 * 120.00144 * 359.97438 * 14 13 6 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 6 17 17 S 1.80999 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00109 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00007 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99781 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00065 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47356 * 89.99822 * 22 20 18 24 24 H 1.48503 * 109.46740 * 209.99724 * 22 20 18 25 25 H 1.48498 * 109.46926 * 329.99160 * 22 20 18 26 26 O 1.34298 * 125.78941 * 180.34855 * 2 1 3 27 27 H 1.09000 * 109.47054 * 90.00440 * 1 2 3 28 28 H 1.09000 * 109.47355 * 209.99960 * 1 2 3 29 29 H 1.09001 * 109.47123 * 330.00188 * 1 2 3 30 30 H 1.08001 * 126.57657 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.57365 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.41795 * 89.88477 * 8 6 5 33 33 H 1.08994 * 109.37704 * 330.03622 * 8 6 5 34 34 H 1.09006 * 108.88126 * 159.77471 * 9 8 6 35 35 H 1.08998 * 108.88771 * 41.30731 * 9 8 6 36 36 H 1.09000 * 108.89354 * 301.92989 * 10 9 8 37 37 H 1.09005 * 108.88601 * 183.45212 * 10 9 8 38 38 H 1.09000 * 109.41756 * 40.66498 * 11 10 9 39 39 H 1.08997 * 109.42428 * 160.47731 * 11 10 9 40 40 H 1.08998 * 109.07215 * 210.02318 * 12 11 10 41 41 H 1.08997 * 109.07222 * 328.97360 * 12 11 10 42 42 H 1.08997 * 109.47148 * 300.00127 * 16 14 13 43 43 H 1.09001 * 109.47268 * 59.99799 * 16 14 13 44 44 H 0.96996 * 119.99954 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6497 -1.0879 -0.3362 8 6 5.0070 -2.1343 1.4003 9 6 6.5034 -2.4156 1.6061 10 6 6.9156 -3.7010 1.0338 11 6 6.7276 -3.7518 -0.4904 12 6 5.2831 -4.0176 -0.8167 13 7 4.5117 -2.7570 -0.9377 14 6 3.5763 -2.6284 -1.8994 15 8 2.9457 -1.5972 -1.9980 16 6 3.3140 -3.7661 -2.8523 17 16 2.0123 -3.2901 -4.0164 18 6 1.9136 -4.7601 -4.9829 19 1 2.5569 -5.5981 -4.7584 20 6 1.0085 -4.8415 -6.0320 21 7 0.9352 -5.9394 -6.7543 22 14 -0.1045 -3.3923 -6.4198 23 1 0.5681 -2.4990 -7.3968 24 1 -1.3792 -3.8882 -6.9983 25 1 -0.3876 -2.6379 -5.1724 26 8 2.2924 -1.0894 -0.0066 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9665 2.1204 0.0004 31 1 4.5212 1.2434 -0.0012 32 1 4.4404 -3.0518 1.5600 33 1 4.6790 -1.3772 2.1125 34 1 6.7176 -2.4203 2.6749 35 1 7.0800 -1.6189 1.1361 36 1 6.3245 -4.4958 1.4888 37 1 7.9674 -3.8693 1.2653 38 1 7.0276 -2.7980 -0.9245 39 1 7.3453 -4.5481 -0.9055 40 1 5.2252 -4.5623 -1.7590 41 1 4.8460 -4.6280 -0.0265 42 1 4.2264 -3.9976 -3.4017 43 1 2.9954 -4.6443 -2.2908 44 1 0.3029 -5.9962 -7.4876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154214176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:36 Heat of formation + Delta-G solvation = -17.216235 kcal Electronic energy + Delta-G solvation = -26127.171205 eV Core-core repulsion = 22558.657180 eV Total energy + Delta-G solvation = -3568.514026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28069 -39.92730 -37.76516 -33.97291 -33.68415 -32.71891 -32.42983 -31.01488 -29.60497 -27.42630 -26.47354 -25.59615 -24.16391 -21.68800 -21.44695 -20.77572 -20.19186 -18.95317 -17.76978 -16.94470 -16.56445 -15.87770 -15.61473 -15.31789 -14.98885 -14.94675 -14.25158 -14.19540 -14.03520 -13.69333 -13.39943 -13.00797 -12.87722 -12.82040 -12.73570 -12.53826 -12.41973 -12.33775 -11.94650 -11.81523 -11.57236 -11.27012 -11.22461 -11.06168 -11.00692 -10.91794 -10.73553 -10.49984 -9.85003 -9.51090 -9.39628 -8.99511 -8.61857 -8.46138 -7.69162 -6.89458 -6.28231 -3.99113 2.11695 2.65082 2.96047 3.01617 3.14011 3.32999 3.34658 3.50758 3.59274 4.33399 4.36402 4.40122 4.55028 4.67836 4.76333 4.88394 4.92741 5.11007 5.12299 5.16843 5.24403 5.34707 5.35462 5.39260 5.44134 5.54299 5.62423 5.66836 5.69259 5.76472 5.79094 5.83265 5.88165 5.93134 6.01222 6.01984 6.07093 6.14015 6.22613 6.43642 6.57227 6.92618 7.43531 7.65449 7.94924 8.42109 8.50584 9.18306 10.81126 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.004671 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.620813 B = 5993.447253 C = 7890.435608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.000 4.000 3 C -0.219 4.219 4 C -0.219 4.219 5 C 0.019 3.981 6 C 0.234 3.766 7 H 0.093 0.907 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.135 4.135 12 C 0.110 3.890 13 N -0.622 5.622 14 C 0.528 3.472 15 O -0.489 6.489 16 C -0.117 4.117 17 S -0.141 6.141 18 C -0.520 4.520 19 H 0.087 0.913 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 O -0.149 6.149 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.471 8.013 19.036 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.238 4.238 4 C -0.238 4.238 5 C -0.033 4.033 6 C 0.132 3.868 7 H 0.111 0.889 8 C -0.166 4.166 9 C -0.155 4.155 10 C -0.158 4.158 11 C -0.173 4.173 12 C -0.012 4.012 13 N -0.361 5.361 14 C 0.316 3.684 15 O -0.362 6.362 16 C -0.267 4.267 17 S 0.086 5.914 18 C -0.668 4.668 19 H 0.105 0.895 20 C -0.112 4.112 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.160 1.160 26 O -0.044 6.044 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.343 9.126 18.730 22.833 hybrid contribution 0.367 -0.647 -0.461 0.876 sum 9.710 8.479 18.268 22.358 Atomic orbital electron populations 1.20242 0.85994 1.03000 1.03634 1.22188 0.93681 0.84451 1.04831 1.21271 0.92641 0.98699 1.11238 1.21154 0.97855 0.93234 1.11600 1.21750 0.83359 0.93651 1.04505 1.19355 0.91805 0.85531 0.90147 0.88950 1.21624 0.97133 1.02863 0.94996 1.20573 0.95278 0.98291 1.01378 1.20618 1.01679 0.98154 0.95382 1.21559 0.95995 1.03406 0.96375 1.21483 0.91337 0.85317 1.03070 1.49030 1.39571 1.15506 1.32041 1.20277 0.78510 0.89096 0.80525 1.90712 1.47092 1.29226 1.69166 1.23291 1.04340 0.99356 0.99748 1.84788 1.45645 1.25039 1.35949 1.22323 1.26588 1.00105 1.17787 0.89473 1.24693 0.96049 0.95984 0.94487 1.69937 1.36167 1.26461 1.19218 0.86741 0.80745 0.83092 0.81316 1.19253 1.19963 1.15962 1.84041 1.15768 1.34538 1.70098 0.89982 0.91057 0.90099 0.84491 0.84587 0.90406 0.90031 0.91523 0.91804 0.91751 0.91749 0.90869 0.90144 0.89473 0.91611 0.88730 0.88745 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 36.01 0.38 -0.56 16 2 C 0.00 -0.01 7.15 -35.62 -0.25 -0.26 16 3 C -0.22 -3.34 10.81 -39.70 -0.43 -3.77 16 4 C -0.22 -3.29 10.80 -39.70 -0.43 -3.72 16 5 C 0.02 0.29 3.72 -35.62 -0.13 0.16 16 6 C 0.23 2.95 2.58 -69.38 -0.18 2.77 16 7 H 0.09 1.06 7.12 -51.93 -0.37 0.69 16 8 C -0.13 -1.22 4.99 -27.66 -0.14 -1.36 16 9 C -0.12 -0.83 5.31 -29.44 -0.16 -0.99 16 10 C -0.12 -0.82 5.31 -29.43 -0.16 -0.97 16 11 C -0.14 -1.09 5.51 -27.66 -0.15 -1.24 16 12 C 0.11 1.17 5.39 -4.33 -0.02 1.15 16 13 N -0.62 -8.78 3.12 -167.55 -0.52 -9.30 16 14 C 0.53 9.89 7.28 -10.99 -0.08 9.81 16 15 O -0.49 -10.70 11.30 -19.43 -0.22 -10.92 16 16 C -0.12 -2.34 4.56 36.00 0.16 -2.17 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 22 Si 0.86 22.00 27.74 -169.99 -4.72 17.28 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 26 O -0.15 -2.71 8.04 -19.28 -0.15 -2.86 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 33 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.43 7.58 -51.93 -0.39 0.04 16 36 H 0.06 0.43 7.58 -51.93 -0.39 0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.64 7.44 -51.93 -0.39 0.25 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.96 6.13 -51.93 -0.32 0.64 16 41 H 0.07 0.64 7.14 -51.93 -0.37 0.27 16 42 H 0.09 1.76 7.46 -51.92 -0.39 1.38 16 43 H 0.09 1.79 8.11 -51.91 -0.42 1.37 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -34.87 358.11 -9.60 -44.47 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.79 Total: 0.68 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.38 Total: -13.21 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.25 Total: -35.24 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.37 Total: -13.78 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.87 -9.60 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154214176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.259 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds