Wall clock time and date at job start Tue Mar 31 2020 14:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34514 * 125.78902 * 2 1 4 4 C 1.41385 * 106.84054 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83945 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78650 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.05729 * 340.97597 * 6 5 4 8 8 C 1.50461 * 109.06787 * 99.99724 * 6 5 4 9 9 C 1.53645 * 109.76057 * 209.96929 * 8 6 5 10 10 C 1.46628 * 112.45699 * 280.53623 * 9 8 6 11 11 C 1.53657 * 112.44212 * 62.69527 * 10 9 8 12 12 C 1.50458 * 109.77839 * 280.57193 * 11 10 9 13 13 N 1.48268 * 109.01255 * 221.98203 * 6 5 4 14 14 C 1.34776 * 120.02379 * 19.97325 * 13 6 5 15 15 O 1.21276 * 120.00144 * 359.97438 * 14 13 6 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 6 17 17 S 1.80999 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00109 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00007 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99781 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00065 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47356 * 89.99822 * 22 20 18 24 24 H 1.48503 * 109.46740 * 209.99724 * 22 20 18 25 25 H 1.48498 * 109.46926 * 329.99160 * 22 20 18 26 26 O 1.34298 * 125.78941 * 180.34855 * 2 1 3 27 27 H 1.09000 * 109.47054 * 90.00440 * 1 2 3 28 28 H 1.09000 * 109.47355 * 209.99960 * 1 2 3 29 29 H 1.09001 * 109.47123 * 330.00188 * 1 2 3 30 30 H 1.08001 * 126.57657 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.57365 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.41795 * 89.88477 * 8 6 5 33 33 H 1.08994 * 109.37704 * 330.03622 * 8 6 5 34 34 H 1.09006 * 108.88126 * 159.77471 * 9 8 6 35 35 H 1.08998 * 108.88771 * 41.30731 * 9 8 6 36 36 H 1.09000 * 108.89354 * 301.92989 * 10 9 8 37 37 H 1.09005 * 108.88601 * 183.45212 * 10 9 8 38 38 H 1.09000 * 109.41756 * 40.66498 * 11 10 9 39 39 H 1.08997 * 109.42428 * 160.47731 * 11 10 9 40 40 H 1.08998 * 109.07215 * 210.02318 * 12 11 10 41 41 H 1.08997 * 109.07222 * 328.97360 * 12 11 10 42 42 H 1.08997 * 109.47148 * 300.00127 * 16 14 13 43 43 H 1.09001 * 109.47268 * 59.99799 * 16 14 13 44 44 H 0.96996 * 119.99954 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6497 -1.0879 -0.3362 8 6 5.0070 -2.1343 1.4003 9 6 6.5034 -2.4156 1.6061 10 6 6.9156 -3.7010 1.0338 11 6 6.7276 -3.7518 -0.4904 12 6 5.2831 -4.0176 -0.8167 13 7 4.5117 -2.7570 -0.9377 14 6 3.5763 -2.6284 -1.8994 15 8 2.9457 -1.5972 -1.9980 16 6 3.3140 -3.7661 -2.8523 17 16 2.0123 -3.2901 -4.0164 18 6 1.9136 -4.7601 -4.9829 19 1 2.5569 -5.5981 -4.7584 20 6 1.0085 -4.8415 -6.0320 21 7 0.9352 -5.9394 -6.7543 22 14 -0.1045 -3.3923 -6.4198 23 1 0.5681 -2.4990 -7.3968 24 1 -1.3792 -3.8882 -6.9983 25 1 -0.3876 -2.6379 -5.1724 26 8 2.2924 -1.0894 -0.0066 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9665 2.1204 0.0004 31 1 4.5212 1.2434 -0.0012 32 1 4.4404 -3.0518 1.5600 33 1 4.6790 -1.3772 2.1125 34 1 6.7176 -2.4203 2.6749 35 1 7.0800 -1.6189 1.1361 36 1 6.3245 -4.4958 1.4888 37 1 7.9674 -3.8693 1.2653 38 1 7.0276 -2.7980 -0.9245 39 1 7.3453 -4.5481 -0.9055 40 1 5.2252 -4.5623 -1.7590 41 1 4.8460 -4.6280 -0.0265 42 1 4.2264 -3.9976 -3.4017 43 1 2.9954 -4.6443 -2.2908 44 1 0.3029 -5.9962 -7.4876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154214176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:35 Heat of formation + Delta-G solvation = -37.030573 kcal Electronic energy + Delta-G solvation = -26128.030419 eV Core-core repulsion = 22558.657180 eV Total energy + Delta-G solvation = -3569.373240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.44342 -41.07938 -38.85423 -35.00699 -34.68748 -34.61907 -33.88242 -31.99619 -31.02267 -28.49684 -27.83980 -27.36824 -25.12517 -22.75453 -22.57509 -21.42407 -21.34804 -20.30745 -19.56102 -18.34703 -17.72012 -17.14015 -17.00258 -16.82973 -16.44171 -15.91765 -15.69668 -15.24973 -15.08067 -14.99167 -14.84554 -14.56783 -13.94357 -13.86813 -13.73515 -13.71049 -13.52942 -13.36038 -13.23064 -13.15717 -13.02253 -12.82029 -12.65210 -12.54151 -12.09888 -11.89974 -11.69733 -11.48875 -11.31986 -11.19288 -10.86149 -10.60511 -10.52660 -9.77728 -9.01238 -8.86295 -8.53532 -6.23851 0.90351 1.00146 1.28482 1.42137 1.49599 1.58154 1.78200 1.96784 2.22596 2.30106 2.66702 2.84781 3.39876 3.63138 3.82149 3.83460 3.97458 4.04618 4.14585 4.15924 4.21489 4.29898 4.36047 4.39578 4.56318 4.58817 4.63577 4.68011 4.75004 4.83640 4.89351 4.98886 5.04077 5.11640 5.17820 5.22660 5.29918 5.35173 5.41836 5.51091 5.53184 5.68874 5.83214 6.08978 6.19315 6.48537 6.91845 7.11533 8.59080 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.004671 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.620813 B = 5993.447253 C = 7890.435608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.226 4.226 4 C -0.230 4.230 5 C 0.003 3.997 6 C 0.233 3.767 7 H 0.108 0.892 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.131 4.131 12 C 0.102 3.898 13 N -0.611 5.611 14 C 0.526 3.474 15 O -0.526 6.526 16 C -0.101 4.101 17 S -0.171 6.171 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.049 3.951 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.239 1.239 26 O -0.177 6.177 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.948 8.923 20.690 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.245 4.245 4 C -0.250 4.250 5 C -0.048 4.048 6 C 0.131 3.869 7 H 0.125 0.875 8 C -0.158 4.158 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.168 4.168 12 C -0.018 4.018 13 N -0.348 5.348 14 C 0.313 3.687 15 O -0.403 6.403 16 C -0.252 4.252 17 S 0.055 5.945 18 C -0.676 4.676 19 H 0.079 0.921 20 C -0.157 4.157 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.163 1.163 26 O -0.073 6.073 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.857 10.012 20.414 25.196 hybrid contribution 0.033 -0.971 -0.874 1.307 sum 10.890 9.041 19.540 24.128 Atomic orbital electron populations 1.20339 0.84379 1.04658 1.03255 1.22847 0.95052 0.84568 1.05644 1.21646 0.92832 0.99519 1.10496 1.21535 0.98666 0.93437 1.11325 1.22381 0.83429 0.94735 1.04207 1.19727 0.91018 0.84782 0.91400 0.87453 1.21583 0.99136 1.02323 0.92790 1.20560 0.93064 0.98705 1.02641 1.20615 1.02901 0.98017 0.94070 1.21552 0.93862 1.03765 0.97662 1.21795 0.92905 0.83839 1.03308 1.49036 1.38115 1.17022 1.30604 1.19995 0.79447 0.88024 0.81275 1.90704 1.48853 1.30239 1.70491 1.23247 1.02559 1.00428 0.98969 1.84704 1.48814 1.23687 1.37270 1.22456 1.26062 1.00662 1.18456 0.92077 1.25511 0.97383 0.98394 0.94389 1.70010 1.37248 1.28184 1.19983 0.85887 0.79605 0.80026 0.80963 1.18772 1.18146 1.16326 1.84007 1.16907 1.35720 1.70668 0.91241 0.90896 0.86991 0.82446 0.82389 0.91227 0.89814 0.89825 0.91098 0.91543 0.89888 0.91286 0.88512 0.90068 0.90451 0.87377 0.87863 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 10.42 71.24 0.74 -1.06 16 2 C -0.03 -1.01 7.15 24.83 0.18 -0.83 16 3 C -0.23 -6.73 10.81 22.19 0.24 -6.49 16 4 C -0.23 -6.69 10.80 22.19 0.24 -6.45 16 5 C 0.00 0.10 3.72 24.83 0.09 0.19 16 6 C 0.23 5.49 2.58 43.08 0.11 5.60 16 7 H 0.11 2.22 7.12 -2.39 -0.02 2.20 16 8 C -0.12 -2.03 4.99 29.99 0.15 -1.88 16 9 C -0.11 -1.19 5.31 28.84 0.15 -1.04 16 10 C -0.12 -1.17 5.31 28.84 0.15 -1.02 16 11 C -0.13 -1.71 5.51 29.99 0.17 -1.54 16 12 C 0.10 1.98 5.39 85.21 0.46 2.44 16 13 N -0.61 -16.50 3.12 -802.40 -2.51 -19.00 16 14 C 0.53 19.57 7.28 87.66 0.64 20.21 16 15 O -0.53 -23.25 11.30 20.88 0.24 -23.02 16 16 C -0.10 -4.06 4.56 71.24 0.33 -3.73 16 17 S -0.17 -8.92 18.55 -56.49 -1.05 -9.96 16 18 C -0.53 -31.30 10.04 67.95 0.68 -30.62 16 19 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.89 5.50 84.86 0.47 3.36 16 21 N -0.92 -56.24 13.97 21.65 0.30 -55.94 16 22 Si 0.91 45.73 27.74 68.60 1.90 47.63 16 23 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 26 O -0.18 -6.47 8.04 21.44 0.17 -6.30 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.07 1.30 7.44 -2.39 -0.02 1.28 16 33 H 0.08 1.41 7.77 -2.39 -0.02 1.39 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.07 0.69 7.58 -2.39 -0.02 0.67 16 36 H 0.07 0.66 7.58 -2.39 -0.02 0.64 16 37 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.07 1.00 7.44 -2.39 -0.02 0.98 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.67 6.13 -2.39 -0.01 1.66 16 41 H 0.08 1.35 7.14 -2.39 -0.02 1.34 16 42 H 0.11 4.01 7.46 -2.40 -0.02 3.99 16 43 H 0.10 3.92 8.11 -2.40 -0.02 3.90 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -76.93 358.11 4.80 -72.13 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.95 Total: 17.33 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.80 Total: -22.86 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.20 Total: -74.94 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: 0.41 Total: -29.32 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.96 kcal Total: -76.93 4.80 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154214176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.096 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds