Wall clock time and date at job start Tue Mar 31 2020 13:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48505 * 109.46916 * 269.99479 * 3 2 1 5 5 H 1.48496 * 109.47090 * 29.99381 * 3 2 1 6 6 H 1.48491 * 109.47144 * 149.99737 * 3 2 1 7 7 C 1.37873 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00313 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46714 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.47016 * 111.00308 * 294.45579 * 12 11 10 14 14 C 1.53093 * 109.26035 * 177.60371 * 13 12 11 15 15 O 1.43023 * 109.25624 * 56.84828 * 14 13 12 16 16 C 1.43011 * 113.73810 * 301.32894 * 15 14 13 17 17 C 1.47010 * 111.00130 * 170.81591 * 12 11 10 18 18 H 1.09005 * 109.50529 * 62.46388 * 17 12 11 19 19 C 1.52999 * 109.50797 * 302.37394 * 17 12 11 20 20 C 1.50705 * 109.47135 * 175.12738 * 19 17 12 21 21 O 1.21447 * 119.99515 * 354.63130 * 20 19 17 22 22 C 1.41232 * 120.00096 * 174.62703 * 20 19 17 23 23 C 1.37180 * 125.48035 * 179.71390 * 22 20 19 24 24 C 1.37201 * 113.24367 * 179.83925 * 23 22 20 25 25 C 1.34026 * 115.14300 * 0.46403 * 24 23 22 26 26 S 1.70605 * 111.00197 * 359.73990 * 25 24 23 27 27 H 0.97004 * 119.99660 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46356 * 60.00450 * 9 7 2 29 29 H 1.08992 * 109.47434 * 300.00329 * 9 7 2 30 30 H 1.08997 * 109.46743 * 60.00574 * 10 9 7 31 31 H 1.08992 * 109.47397 * 300.00325 * 10 9 7 32 32 H 1.09002 * 109.47231 * 300.00149 * 11 10 9 33 33 H 1.09003 * 109.46917 * 60.00356 * 11 10 9 34 34 H 1.08999 * 109.50262 * 297.54391 * 13 12 11 35 35 H 1.09006 * 109.50761 * 57.66848 * 13 12 11 36 36 H 1.09002 * 109.51020 * 296.91326 * 14 13 12 37 37 H 1.09000 * 109.50865 * 176.78187 * 14 13 12 38 38 H 1.09005 * 109.50552 * 298.73473 * 16 15 14 39 39 H 1.08997 * 109.50670 * 178.60644 * 16 15 14 40 40 H 1.08996 * 109.46900 * 295.12806 * 19 17 12 41 41 H 1.08995 * 109.47192 * 55.12934 * 19 17 12 42 42 H 1.08002 * 123.37863 * 0.02562 * 23 22 20 43 43 H 1.07994 * 122.43350 * 180.20334 * 24 23 22 44 44 H 1.07999 * 124.49953 * 179.77064 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4348 -6.1037 0.0049 13 6 3.2100 -6.1360 -1.2439 14 6 4.2308 -7.2748 -1.1752 15 8 3.5471 -8.5070 -0.9302 16 6 2.7827 -8.5107 0.2784 17 6 1.7471 -7.3843 0.2245 18 1 1.0511 -7.5688 -0.5939 19 6 0.9789 -7.3317 1.5466 20 6 0.1790 -8.5979 1.7136 21 8 0.1417 -9.4153 0.8162 22 6 -0.5272 -8.8340 2.9137 23 6 -1.2920 -9.9405 3.1830 24 6 -1.8641 -9.9129 4.4297 25 6 -1.5906 -8.8213 5.1577 26 16 -0.5738 -7.7532 4.2999 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5574 -0.8881 29 1 0.6246 -2.5563 0.8919 30 1 2.8718 -3.6035 0.8927 31 1 2.8720 -3.6051 -0.8872 32 1 0.8532 -5.0443 0.8931 33 1 0.8539 -5.0454 -0.8869 34 1 2.5373 -6.3003 -2.0856 35 1 3.7311 -5.1874 -1.3735 36 1 4.9363 -7.0830 -0.3667 37 1 4.7688 -7.3389 -2.1210 38 1 3.4461 -8.3549 1.1292 39 1 2.2734 -9.4686 0.3839 40 1 1.6835 -7.2354 2.3726 41 1 0.3056 -6.4746 1.5417 42 1 -1.4275 -10.7534 2.4849 43 1 -2.4929 -10.7108 4.7963 44 1 -1.9639 -8.6419 6.1552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154400044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:03 Heat of formation + Delta-G solvation = -49.456261 kcal Electronic energy + Delta-G solvation = -24876.225686 eV Core-core repulsion = 21306.313628 eV Total energy + Delta-G solvation = -3569.912058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47746 -39.20315 -37.61108 -36.25432 -33.79718 -32.73803 -31.26684 -30.79921 -28.55118 -27.54429 -25.42096 -25.31694 -23.22882 -22.47059 -21.20684 -20.09738 -19.79857 -19.47204 -17.90456 -16.57217 -16.45706 -16.20322 -15.94481 -15.74284 -15.19045 -14.87054 -14.61849 -14.47771 -14.19896 -13.90041 -13.64879 -13.60358 -13.12277 -13.09738 -12.68957 -12.53789 -12.30190 -11.95642 -11.79255 -11.51656 -11.28625 -11.20571 -11.12109 -10.84916 -10.61062 -10.46990 -10.37391 -9.98027 -9.63818 -9.59632 -9.31206 -9.21958 -9.05185 -8.93195 -8.35331 -8.17620 -6.00651 -4.02738 -0.01973 1.19261 1.58849 1.87486 2.66705 3.31401 3.37720 3.41140 3.63919 3.86358 4.25069 4.46199 4.59712 4.69955 4.73187 4.95544 5.02408 5.09180 5.13229 5.20095 5.30164 5.35020 5.36905 5.49147 5.57685 5.62078 5.70557 5.77357 5.84869 5.87412 5.89615 5.96667 5.97906 6.11515 6.27928 6.64691 6.71247 7.05413 7.14493 7.22239 7.28051 7.33230 7.66794 7.81180 7.99447 8.42617 9.04344 9.61380 11.10734 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003215 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.286160 B = 8708.054110 C =10911.147544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.049 3.951 12 N -0.533 5.533 13 C 0.017 3.983 14 C 0.062 3.938 15 O -0.385 6.385 16 C 0.069 3.931 17 C 0.061 3.939 18 H 0.057 0.943 19 C -0.169 4.169 20 C 0.425 3.575 21 O -0.449 6.449 22 C -0.308 4.308 23 C -0.046 4.046 24 C -0.160 4.160 25 C -0.228 4.228 26 S 0.244 5.756 27 H 0.260 0.740 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -20.680 8.769 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.078 4.078 12 N -0.258 5.258 13 C -0.111 4.111 14 C -0.015 4.015 15 O -0.303 6.303 16 C -0.008 4.008 17 C -0.048 4.048 18 H 0.075 0.925 19 C -0.206 4.206 20 C 0.303 3.697 21 O -0.327 6.327 22 C -0.426 4.426 23 C -0.080 4.080 24 C -0.191 4.191 25 C -0.367 4.367 26 S 0.512 5.488 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.530 -19.639 8.918 21.576 hybrid contribution -1.080 -0.170 -0.555 1.226 sum -0.550 -19.809 8.363 21.509 Atomic orbital electron populations 1.69969 1.06051 1.26557 1.50992 1.25025 0.94841 0.99244 0.95375 0.86604 0.79877 0.83505 0.78088 1.20713 1.21245 1.19847 1.21236 0.93028 0.91008 1.50379 0.92692 1.19070 0.94012 0.91386 0.97084 1.21652 0.99168 0.92506 1.00835 1.22438 0.93969 0.90914 1.00439 1.62321 1.26376 1.02270 1.34835 1.22815 0.96925 1.00455 0.90870 1.22710 0.93819 0.83402 1.01603 1.87980 1.65018 1.35140 1.42181 1.22795 0.92211 0.98654 0.87168 1.21984 0.95465 0.91129 0.96255 0.92495 1.22200 1.00561 0.97656 1.00227 1.20072 0.78077 0.87293 0.84212 1.90589 1.55724 1.45626 1.40742 1.24216 1.12790 1.02837 1.02751 1.21030 0.93398 0.97104 0.96482 1.20062 1.04479 0.99981 0.94571 1.25617 1.05286 0.99951 1.05812 1.83399 1.41838 1.19194 1.04330 0.93041 0.96847 0.96614 0.92502 0.93416 0.90807 0.95093 0.94101 0.88644 0.92334 0.88674 0.92784 0.87953 0.87419 0.86960 0.83000 0.83816 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.09 5.07 -26.73 -0.14 -2.23 16 11 C 0.05 0.83 4.73 -3.82 -0.02 0.82 16 12 N -0.53 -7.99 4.54 -226.34 -1.03 -9.02 16 13 C 0.02 0.25 5.43 -3.71 -0.02 0.23 16 14 C 0.06 0.78 7.01 37.21 0.26 1.04 16 15 O -0.38 -5.59 10.83 -35.23 -0.38 -5.97 16 16 C 0.07 0.92 6.00 37.21 0.22 1.14 16 17 C 0.06 0.84 1.70 -67.60 -0.11 0.72 16 18 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 19 C -0.17 -1.99 4.34 -27.88 -0.12 -2.11 16 20 C 0.43 5.08 6.58 -33.17 -0.22 4.86 16 21 O -0.45 -6.42 14.56 5.41 0.08 -6.34 16 22 C -0.31 -3.17 6.23 -38.83 -0.24 -3.41 16 23 C -0.05 -0.43 9.95 -40.34 -0.40 -0.83 16 24 C -0.16 -1.20 10.14 -41.44 -0.42 -1.62 16 25 C -0.23 -1.61 10.93 29.25 0.32 -1.29 16 26 S 0.24 2.02 22.42 -107.50 -2.41 -0.39 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.95 6.49 -51.93 -0.34 0.61 16 32 H 0.07 1.19 5.69 -51.93 -0.30 0.90 16 33 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.36 6.35 -51.93 -0.33 1.03 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.37 6.23 -51.93 -0.32 1.05 16 40 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.11 1.34 5.92 -51.93 -0.31 1.03 16 42 H 0.15 1.31 8.02 -52.49 -0.42 0.89 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -32.05 366.16 -10.56 -42.61 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.62 Total: -1.28 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.44 Total: -15.62 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.29 Total: -35.07 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.30 Total: -12.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.41 Total: -0.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.05 -10.56 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154400044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.844 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds