Wall clock time and date at job start Tue Mar 31 2020 13:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99328 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99963 * 3 2 1 5 5 H 1.48496 * 109.47341 * 29.99865 * 3 2 1 6 6 H 1.48493 * 109.46652 * 150.00024 * 3 2 1 7 7 C 1.37866 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47394 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.47015 * 110.99439 * 51.84766 * 12 11 10 14 14 C 1.53098 * 109.25188 * 182.38888 * 13 12 11 15 15 O 1.43016 * 109.26277 * 303.15387 * 14 13 12 16 16 C 1.43011 * 113.73692 * 58.66848 * 15 14 13 17 17 C 1.47006 * 110.99930 * 175.48337 * 12 11 10 18 18 H 1.09005 * 109.50634 * 297.54300 * 17 12 11 19 19 C 1.52998 * 109.50893 * 57.67127 * 17 12 11 20 20 C 1.50696 * 109.47488 * 186.00434 * 19 17 12 21 21 O 1.21445 * 119.99972 * 5.78706 * 20 19 17 22 22 C 1.41233 * 120.00567 * 185.78625 * 20 19 17 23 23 C 1.37180 * 125.48504 * 179.72253 * 22 20 19 24 24 C 1.37199 * 113.24551 * 179.83918 * 23 22 20 25 25 C 1.34025 * 115.14523 * 0.44910 * 24 23 22 26 26 S 1.70610 * 110.99836 * 359.75021 * 25 24 23 27 27 H 0.96993 * 120.00704 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46869 * 60.00281 * 9 7 2 29 29 H 1.08997 * 109.47380 * 300.00146 * 9 7 2 30 30 H 1.09002 * 109.47122 * 59.99517 * 10 9 7 31 31 H 1.09005 * 109.47213 * 300.00310 * 10 9 7 32 32 H 1.09002 * 109.47021 * 60.00210 * 11 10 9 33 33 H 1.08992 * 109.46847 * 300.00094 * 11 10 9 34 34 H 1.08996 * 109.50916 * 302.32141 * 13 12 11 35 35 H 1.08999 * 109.50673 * 62.45764 * 13 12 11 36 36 H 1.09001 * 109.50549 * 183.21733 * 14 13 12 37 37 H 1.09002 * 109.50586 * 63.09289 * 14 13 12 38 38 H 1.09000 * 109.50588 * 181.39530 * 16 15 14 39 39 H 1.08999 * 109.54425 * 61.28903 * 16 15 14 40 40 H 1.09000 * 109.47315 * 306.00858 * 19 17 12 41 41 H 1.09008 * 109.46937 * 66.00726 * 19 17 12 42 42 H 1.08004 * 123.37612 * 359.97438 * 23 22 20 43 43 H 1.08003 * 122.43142 * 180.20125 * 24 23 22 44 44 H 1.08000 * 124.50270 * 179.77270 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0000 10 6 4.0218 -2.6362 0.0001 11 6 5.5518 -2.6361 0.0001 12 7 6.0416 -4.0211 0.0009 13 6 5.4178 -4.8010 -1.0781 14 6 5.9098 -6.2488 -1.0038 15 8 7.3379 -6.2663 -1.0790 16 6 7.9781 -5.5169 -0.0427 17 6 7.5071 -4.0617 -0.1071 18 1 7.8145 -3.6214 -1.0557 19 6 8.1266 -3.2725 1.0480 20 6 9.6190 -3.1896 0.8564 21 8 10.1254 -3.6184 -0.1608 22 6 10.4289 -2.6132 1.8596 23 6 11.7937 -2.4853 1.8054 24 6 12.3258 -1.8836 2.9176 25 6 11.4361 -1.5369 3.8581 26 16 9.8508 -1.9508 3.3823 27 1 -0.4851 0.8399 0.0004 28 1 3.8752 -0.6794 0.8895 29 1 3.8746 -0.6805 -0.8905 30 1 3.6581 -3.1504 -0.8896 31 1 3.6588 -3.1500 0.8903 32 1 5.9150 -2.1222 0.8901 33 1 5.9150 -2.1223 -0.8898 34 1 4.3341 -4.7785 -0.9638 35 1 5.6918 -4.3724 -2.0421 36 1 5.4946 -6.8174 -1.8359 37 1 5.5894 -6.6943 -0.0620 38 1 9.0587 -5.5562 -0.1796 39 1 7.7185 -5.9408 0.9274 40 1 7.7063 -2.2670 1.0676 41 1 7.9086 -3.7759 1.9900 42 1 12.3893 -2.8224 0.9698 43 1 13.3852 -1.7060 3.0292 44 1 11.6890 -1.0587 4.7929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154400155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:06 Heat of formation + Delta-G solvation = -45.808991 kcal Electronic energy + Delta-G solvation = -24934.419162 eV Core-core repulsion = 21364.665262 eV Total energy + Delta-G solvation = -3569.753901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54031 -39.27894 -37.67968 -36.36608 -33.89335 -32.76650 -31.43316 -30.85965 -28.73002 -27.76124 -25.63083 -25.42316 -23.28665 -22.27493 -21.28019 -20.09703 -19.79701 -19.53921 -17.95872 -16.81544 -16.51167 -16.33216 -16.10183 -15.79861 -15.29420 -14.93559 -14.71841 -14.38303 -14.25849 -13.95694 -13.71063 -13.58477 -13.19007 -13.17241 -12.81289 -12.61840 -12.57445 -12.05076 -11.95560 -11.70358 -11.51108 -11.32203 -11.20531 -10.92129 -10.60708 -10.50276 -10.06370 -9.98107 -9.75886 -9.67253 -9.48340 -9.28995 -9.17189 -9.00587 -8.55022 -8.24578 -6.05333 -4.03382 -0.09016 1.11694 1.51174 1.80792 2.59926 3.29161 3.36636 3.39513 3.56823 3.82611 4.18745 4.43799 4.52951 4.63393 4.67112 4.88838 4.96692 5.03542 5.08286 5.13747 5.27181 5.28243 5.32072 5.43194 5.50482 5.55454 5.62485 5.69074 5.74710 5.80298 5.83287 5.90270 5.94183 6.05121 6.10096 6.47610 6.51702 6.83619 7.07295 7.13785 7.14675 7.25716 7.29647 7.41523 7.78482 8.53123 8.99762 9.57209 11.08216 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003460 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.506766 B = 8090.000951 C =10341.845249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.048 3.952 12 N -0.532 5.532 13 C 0.014 3.986 14 C 0.061 3.939 15 O -0.385 6.385 16 C 0.070 3.930 17 C 0.060 3.940 18 H 0.058 0.942 19 C -0.167 4.167 20 C 0.424 3.576 21 O -0.448 6.448 22 C -0.307 4.307 23 C -0.046 4.046 24 C -0.160 4.160 25 C -0.228 4.228 26 S 0.240 5.760 27 H 0.263 0.737 28 H 0.016 0.984 29 H 0.009 0.991 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.397 -7.185 7.048 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.140 4.140 11 C -0.079 4.079 12 N -0.257 5.257 13 C -0.114 4.114 14 C -0.016 4.016 15 O -0.303 6.303 16 C -0.008 4.008 17 C -0.049 4.049 18 H 0.076 0.924 19 C -0.205 4.205 20 C 0.303 3.697 21 O -0.325 6.325 22 C -0.425 4.425 23 C -0.080 4.080 24 C -0.190 4.190 25 C -0.366 4.366 26 S 0.508 5.492 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 23.024 -7.445 7.519 25.339 hybrid contribution 1.888 1.613 -0.994 2.675 sum 24.912 -5.831 6.525 26.404 Atomic orbital electron populations 1.69912 1.06298 1.26873 1.51242 1.25034 0.94720 0.99154 0.94611 0.86782 0.80346 0.83692 0.78478 1.20365 1.21379 1.19037 1.21126 0.89452 0.94451 1.50663 0.91029 1.19544 0.97219 0.92159 0.96119 1.21574 0.90760 0.99928 1.01710 1.22419 0.98052 0.87110 1.00285 1.62321 1.03864 1.13893 1.45657 1.22876 1.01419 0.94068 0.92995 1.22730 0.80879 0.95703 1.02256 1.87982 1.19153 1.71839 1.51315 1.22764 0.97879 0.89013 0.91106 1.22017 0.88734 0.96796 0.97334 0.92373 1.22159 0.92884 1.03906 1.01567 1.20069 0.90601 0.74795 0.84274 1.90599 1.76719 1.37923 1.27300 1.24213 0.98824 1.16246 1.03255 1.21041 0.92873 0.95386 0.98651 1.20073 1.01612 1.03351 0.94001 1.25610 0.98848 1.06974 1.05138 1.83341 1.05458 1.51387 1.08993 0.92745 0.96601 0.97308 0.92579 0.91801 0.90786 0.95164 0.88170 0.93999 0.88562 0.92293 0.88094 0.92736 0.87198 0.87439 0.82958 0.83764 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.70 9.66 -34.45 -0.33 -15.04 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.96 4.64 -26.73 -0.12 -2.08 16 11 C 0.05 0.77 4.56 -3.82 -0.02 0.75 16 12 N -0.53 -7.63 4.65 -226.35 -1.05 -8.69 16 13 C 0.01 0.20 5.12 -3.71 -0.02 0.18 16 14 C 0.06 0.76 7.01 37.21 0.26 1.02 16 15 O -0.38 -5.47 10.83 -35.23 -0.38 -5.85 16 16 C 0.07 0.89 6.01 37.21 0.22 1.12 16 17 C 0.06 0.79 1.69 -67.61 -0.11 0.68 16 18 H 0.06 0.88 7.83 -51.93 -0.41 0.47 16 19 C -0.17 -1.84 4.33 -27.89 -0.12 -1.96 16 20 C 0.42 4.80 6.58 -33.17 -0.22 4.58 16 21 O -0.45 -6.19 14.65 5.41 0.08 -6.11 16 22 C -0.31 -2.96 6.23 -38.83 -0.24 -3.20 16 23 C -0.05 -0.40 9.95 -40.34 -0.40 -0.80 16 24 C -0.16 -1.10 10.14 -41.44 -0.42 -1.52 16 25 C -0.23 -1.46 10.93 29.25 0.32 -1.14 16 26 S 0.24 1.80 22.42 -107.50 -2.41 -0.61 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 29 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 30 H 0.06 1.08 6.27 -51.93 -0.33 0.75 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 33 H 0.03 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.10 1.42 6.06 -51.93 -0.31 1.11 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.30 6.35 -51.93 -0.33 0.97 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 1.19 6.15 -51.93 -0.32 0.87 16 41 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 42 H 0.15 1.24 8.02 -52.48 -0.42 0.82 16 43 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.65 362.31 -10.22 -42.88 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.61 Total: -0.93 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.42 Total: -16.00 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.28 Total: -35.79 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.30 Total: -11.96 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.41 Total: -0.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.65 -10.22 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154400155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.933 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds