Wall clock time and date at job start Tue Mar 31 2020 13:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99328 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99963 * 3 2 1 5 5 H 1.48496 * 109.47341 * 29.99865 * 3 2 1 6 6 H 1.48493 * 109.46652 * 150.00024 * 3 2 1 7 7 C 1.37866 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47394 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.47015 * 110.99439 * 51.84766 * 12 11 10 14 14 C 1.53098 * 109.25188 * 182.38888 * 13 12 11 15 15 O 1.43016 * 109.26277 * 303.15387 * 14 13 12 16 16 C 1.43011 * 113.73692 * 58.66848 * 15 14 13 17 17 C 1.47006 * 110.99930 * 175.48337 * 12 11 10 18 18 H 1.09005 * 109.50634 * 297.54300 * 17 12 11 19 19 C 1.52998 * 109.50893 * 57.67127 * 17 12 11 20 20 C 1.50696 * 109.47488 * 186.00434 * 19 17 12 21 21 O 1.21445 * 119.99972 * 5.78706 * 20 19 17 22 22 C 1.41233 * 120.00567 * 185.78625 * 20 19 17 23 23 C 1.37180 * 125.48504 * 179.72253 * 22 20 19 24 24 C 1.37199 * 113.24551 * 179.83918 * 23 22 20 25 25 C 1.34025 * 115.14523 * 0.44910 * 24 23 22 26 26 S 1.70610 * 110.99836 * 359.75021 * 25 24 23 27 27 H 0.96993 * 120.00704 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46869 * 60.00281 * 9 7 2 29 29 H 1.08997 * 109.47380 * 300.00146 * 9 7 2 30 30 H 1.09002 * 109.47122 * 59.99517 * 10 9 7 31 31 H 1.09005 * 109.47213 * 300.00310 * 10 9 7 32 32 H 1.09002 * 109.47021 * 60.00210 * 11 10 9 33 33 H 1.08992 * 109.46847 * 300.00094 * 11 10 9 34 34 H 1.08996 * 109.50916 * 302.32141 * 13 12 11 35 35 H 1.08999 * 109.50673 * 62.45764 * 13 12 11 36 36 H 1.09001 * 109.50549 * 183.21733 * 14 13 12 37 37 H 1.09002 * 109.50586 * 63.09289 * 14 13 12 38 38 H 1.09000 * 109.50588 * 181.39530 * 16 15 14 39 39 H 1.08999 * 109.54425 * 61.28903 * 16 15 14 40 40 H 1.09000 * 109.47315 * 306.00858 * 19 17 12 41 41 H 1.09008 * 109.46937 * 66.00726 * 19 17 12 42 42 H 1.08004 * 123.37612 * 359.97438 * 23 22 20 43 43 H 1.08003 * 122.43142 * 180.20125 * 24 23 22 44 44 H 1.08000 * 124.50270 * 179.77270 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0000 10 6 4.0218 -2.6362 0.0001 11 6 5.5518 -2.6361 0.0001 12 7 6.0416 -4.0211 0.0009 13 6 5.4178 -4.8010 -1.0781 14 6 5.9098 -6.2488 -1.0038 15 8 7.3379 -6.2663 -1.0790 16 6 7.9781 -5.5169 -0.0427 17 6 7.5071 -4.0617 -0.1071 18 1 7.8145 -3.6214 -1.0557 19 6 8.1266 -3.2725 1.0480 20 6 9.6190 -3.1896 0.8564 21 8 10.1254 -3.6184 -0.1608 22 6 10.4289 -2.6132 1.8596 23 6 11.7937 -2.4853 1.8054 24 6 12.3258 -1.8836 2.9176 25 6 11.4361 -1.5369 3.8581 26 16 9.8508 -1.9508 3.3823 27 1 -0.4851 0.8399 0.0004 28 1 3.8752 -0.6794 0.8895 29 1 3.8746 -0.6805 -0.8905 30 1 3.6581 -3.1504 -0.8896 31 1 3.6588 -3.1500 0.8903 32 1 5.9150 -2.1222 0.8901 33 1 5.9150 -2.1223 -0.8898 34 1 4.3341 -4.7785 -0.9638 35 1 5.6918 -4.3724 -2.0421 36 1 5.4946 -6.8174 -1.8359 37 1 5.5894 -6.6943 -0.0620 38 1 9.0587 -5.5562 -0.1796 39 1 7.7185 -5.9408 0.9274 40 1 7.7063 -2.2670 1.0676 41 1 7.9086 -3.7759 1.9900 42 1 12.3893 -2.8224 0.9698 43 1 13.3852 -1.7060 3.0292 44 1 11.6890 -1.0587 4.7929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154400155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:05 Heat of formation + Delta-G solvation = -66.889256 kcal Electronic energy + Delta-G solvation = -24935.333271 eV Core-core repulsion = 21364.665262 eV Total energy + Delta-G solvation = -3570.668010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.49190 -40.23345 -38.31779 -37.60879 -35.59024 -34.16798 -33.09468 -31.59993 -29.99410 -28.87276 -27.14140 -26.13784 -24.24549 -23.87655 -22.17055 -21.60080 -20.92077 -20.17333 -18.89719 -18.73402 -17.51279 -17.38041 -16.91910 -16.69497 -16.37251 -16.30176 -16.00125 -15.71154 -15.25014 -15.07492 -14.93354 -14.65015 -14.62113 -14.05401 -13.81605 -13.72022 -13.61032 -13.28164 -13.26193 -13.00042 -12.78352 -12.56470 -12.27306 -12.15132 -11.85222 -11.81672 -11.63155 -11.45356 -11.43141 -11.16735 -10.92861 -10.75530 -10.61334 -9.90247 -9.55362 -9.43434 -8.28303 -6.32462 -0.73698 0.53671 0.95716 1.16095 1.36849 1.38115 1.50266 1.91573 2.37028 2.55184 2.83049 3.07255 3.25219 3.65239 3.66995 3.95270 4.04841 4.08495 4.12409 4.19533 4.28787 4.30709 4.38803 4.46923 4.48866 4.54866 4.57013 4.67289 4.70805 4.78940 4.82045 4.90533 4.97495 5.00467 5.02222 5.13603 5.23790 5.34176 5.50180 5.59027 5.66550 5.91684 5.95256 6.13051 6.30470 6.41686 6.75959 7.32245 8.88651 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003460 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.506766 B = 8090.000951 C =10341.845249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.531 4.531 8 H 0.031 0.969 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.058 3.942 12 N -0.530 5.530 13 C 0.012 3.988 14 C 0.064 3.936 15 O -0.402 6.402 16 C 0.071 3.929 17 C 0.064 3.936 18 H 0.036 0.964 19 C -0.163 4.163 20 C 0.430 3.570 21 O -0.485 6.485 22 C -0.341 4.341 23 C -0.047 4.047 24 C -0.169 4.169 25 C -0.214 4.214 26 S 0.255 5.745 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.013 0.987 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.095 0.905 35 H 0.031 0.969 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.827 -6.143 8.718 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.569 4.569 8 H 0.049 0.951 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.069 4.069 12 N -0.255 5.255 13 C -0.116 4.116 14 C -0.013 4.013 15 O -0.320 6.320 16 C -0.006 4.006 17 C -0.045 4.045 18 H 0.054 0.946 19 C -0.201 4.201 20 C 0.311 3.689 21 O -0.366 6.366 22 C -0.459 4.459 23 C -0.081 4.081 24 C -0.199 4.199 25 C -0.352 4.352 26 S 0.523 5.477 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.184 0.816 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 25.466 -6.419 9.205 27.828 hybrid contribution 1.101 1.228 -1.468 2.208 sum 26.567 -5.191 7.736 28.153 Atomic orbital electron populations 1.70072 1.08374 1.28147 1.52838 1.26041 0.95606 1.03605 0.94172 0.85655 0.79736 0.78181 0.79070 1.19574 1.20966 1.16449 1.21494 0.92198 0.93042 1.50151 0.95077 1.19488 0.93815 0.94920 0.96528 1.21379 0.93212 0.97206 1.01141 1.22237 0.95405 0.88299 1.00973 1.62334 1.04645 1.12832 1.45669 1.22910 1.01138 0.95171 0.92411 1.22820 0.80104 0.94741 1.03604 1.87961 1.20028 1.72052 1.51986 1.22791 0.97710 0.88632 0.91435 1.21986 0.87765 0.97383 0.97332 0.94626 1.22155 0.92763 1.03888 1.01287 1.20172 0.90721 0.73944 0.84066 1.90587 1.77175 1.39994 1.28799 1.24138 0.99216 1.18211 1.04295 1.21249 0.92727 0.94941 0.99218 1.20287 1.02948 1.03253 0.93405 1.26020 0.98029 1.05393 1.05779 1.83260 1.06120 1.50822 1.07471 0.92540 0.95615 0.96818 0.93261 0.92429 0.89091 0.95527 0.88713 0.95078 0.86728 0.91375 0.88361 0.91341 0.86756 0.85680 0.83254 0.81554 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.96 21.44 0.30 -59.77 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 43.87 27.47 68.60 1.88 45.76 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.53 -30.56 9.66 25.60 0.25 -30.31 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.47 4.64 30.60 0.14 -3.33 16 11 C 0.06 1.77 4.56 86.30 0.39 2.16 16 12 N -0.53 -14.66 4.65 -870.03 -4.04 -18.70 16 13 C 0.01 0.32 5.12 86.31 0.44 0.76 16 14 C 0.06 1.52 7.01 72.01 0.50 2.03 16 15 O -0.40 -11.13 10.83 -148.98 -1.61 -12.74 16 16 C 0.07 1.77 6.01 72.01 0.43 2.21 16 17 C 0.06 1.65 1.69 44.93 0.08 1.72 16 18 H 0.04 1.09 7.83 -2.38 -0.02 1.07 16 19 C -0.16 -3.36 4.33 29.85 0.13 -3.23 16 20 C 0.43 9.47 6.58 26.42 0.17 9.64 16 21 O -0.49 -13.58 14.65 -3.54 -0.05 -13.63 16 22 C -0.34 -6.13 6.23 22.76 0.14 -5.99 16 23 C -0.05 -0.75 9.95 21.78 0.22 -0.53 16 24 C -0.17 -1.89 10.14 21.06 0.21 -1.68 16 25 C -0.21 -2.03 10.93 66.86 0.73 -1.30 16 26 S 0.25 3.19 22.42 -56.49 -1.27 1.92 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 29 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 30 H 0.05 1.91 6.27 -2.39 -0.01 1.90 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.09 2.47 6.40 -2.39 -0.02 2.46 16 33 H 0.03 0.84 8.13 -2.39 -0.02 0.82 16 34 H 0.09 2.69 6.06 -2.39 -0.01 2.68 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.10 2.52 6.35 -2.39 -0.02 2.51 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.11 2.26 6.15 -2.39 -0.01 2.24 16 41 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.15 2.37 8.02 -2.91 -0.02 2.35 16 43 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -71.68 362.31 0.57 -71.11 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.94 Total: 13.64 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.43 Total: -27.58 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.74 Total: -78.47 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.66 Total: -26.37 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.27 Total: 1.92 kcal Total: -71.68 0.57 -71.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154400155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.217 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds