Wall clock time and date at job start Tue Mar 31 2020 13:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99608 * 2 1 4 4 H 1.48503 * 109.46730 * 240.00029 * 3 2 1 5 5 H 1.48497 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 120.00544 * 3 2 1 7 7 C 1.38810 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 158.71954 * 7 2 1 9 9 N 1.36931 * 119.99964 * 338.71647 * 7 2 1 10 10 C 1.46497 * 120.00261 * 321.98825 * 9 7 2 11 11 C 1.53005 * 109.46676 * 269.99656 * 10 9 7 12 12 S 1.81402 * 109.46864 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54544 * 291.62611 * 12 11 10 14 14 O 1.42104 * 110.54159 * 68.37408 * 12 11 10 15 15 C 1.76198 * 104.44973 * 180.02562 * 12 11 10 16 16 C 1.38242 * 120.00000 * 269.72907 * 15 12 11 17 17 C 1.38227 * 119.99998 * 179.76582 * 16 15 12 18 18 C 1.38241 * 119.99965 * 0.50556 * 17 16 15 19 19 C 1.38237 * 120.00098 * 359.74512 * 18 17 16 20 20 C 1.38227 * 120.00216 * 89.99827 * 15 12 11 21 21 C 1.46506 * 119.99691 * 141.98177 * 9 7 2 22 22 C 1.54265 * 110.03516 * 297.70225 * 21 9 7 23 23 C 1.54963 * 104.16137 * 95.75455 * 22 21 9 24 24 C 1.54890 * 102.77570 * 37.88925 * 23 22 21 25 25 C 1.53866 * 110.03376 * 54.92072 * 21 9 7 26 26 H 0.97003 * 120.00377 * 355.04037 * 1 2 3 27 27 H 1.08999 * 109.47464 * 29.99790 * 10 9 7 28 28 H 1.08998 * 109.47471 * 149.99990 * 10 9 7 29 29 H 1.08992 * 109.47079 * 299.99388 * 11 10 9 30 30 H 1.08998 * 109.46898 * 59.99983 * 11 10 9 31 31 H 1.07998 * 119.99861 * 359.97438 * 16 15 12 32 32 H 1.08000 * 120.00612 * 180.22847 * 17 16 15 33 33 H 1.07995 * 119.99955 * 179.72561 * 18 17 16 34 34 H 1.07997 * 120.00243 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99991 * 0.02562 * 20 15 12 36 36 H 1.09001 * 110.01164 * 176.31131 * 21 9 7 37 37 H 1.09002 * 110.48514 * 214.40579 * 22 21 9 38 38 H 1.08999 * 110.48543 * 337.04095 * 22 21 9 39 39 H 1.09000 * 110.71826 * 279.57373 * 23 22 21 40 40 H 1.09002 * 110.92177 * 156.29471 * 23 22 21 41 41 H 1.08997 * 110.48498 * 203.40434 * 24 23 22 42 42 H 1.08999 * 110.59597 * 80.81761 * 24 23 22 43 43 H 1.09001 * 110.03379 * 359.94851 * 25 21 9 44 44 H 1.08999 * 110.03416 * 121.37683 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0350 -1.2337 -0.3400 9 7 1.3957 -2.3477 0.4294 10 6 0.4764 -2.3024 1.5691 11 6 1.2568 -2.5401 2.8635 12 16 0.1186 -2.4833 4.2748 13 8 -0.3751 -1.1643 4.4646 14 8 -0.7618 -3.5985 4.2507 15 6 1.1443 -2.7688 5.6787 16 6 1.3555 -4.0585 6.1297 17 6 2.1641 -4.2829 7.2281 18 6 2.7532 -3.2169 7.8820 19 6 2.5379 -1.9269 7.4342 20 6 1.7335 -1.7030 6.3325 21 6 1.6575 -3.6188 -0.2505 22 6 1.1917 -3.5384 -1.7190 23 6 2.4751 -3.1670 -2.5040 24 6 3.5721 -3.9775 -1.7701 25 6 3.1703 -3.8975 -0.2828 26 1 -0.4851 0.8369 0.0726 27 1 -0.0049 -1.3252 1.6092 28 1 -0.2824 -3.0766 1.4549 29 1 1.7378 -3.5173 2.8234 30 1 2.0155 -1.7660 2.9777 31 1 0.8913 -4.8909 5.6217 32 1 2.3321 -5.2906 7.5782 33 1 3.3814 -3.3919 8.7428 34 1 2.9979 -1.0940 7.9453 35 1 1.5647 -0.6950 5.9831 36 1 1.1393 -4.4295 0.2617 37 1 0.8075 -4.5030 -2.0506 38 1 0.4338 -2.7639 -1.8369 39 1 2.6735 -2.0974 -2.4348 40 1 2.3975 -3.4774 -3.5460 41 1 4.5506 -3.5232 -1.9260 42 1 3.5751 -5.0134 -2.1093 43 1 3.7099 -3.0866 0.2066 44 1 3.3865 -4.8434 0.2138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156611958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:15 Heat of formation + Delta-G solvation = -31.503339 kcal Electronic energy + Delta-G solvation = -25844.208020 eV Core-core repulsion = 22275.074459 eV Total energy + Delta-G solvation = -3569.133561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.07031 -37.95020 -36.53923 -35.38211 -34.66630 -31.68931 -31.28354 -31.04660 -29.75523 -27.87009 -26.73921 -24.36498 -23.14753 -22.74116 -21.48173 -19.86975 -19.13620 -18.65506 -17.73791 -16.55975 -15.90722 -15.74210 -15.56360 -15.39850 -14.80312 -14.56544 -14.50985 -14.29951 -13.56532 -13.50017 -13.30747 -12.96227 -12.86531 -12.63857 -12.16733 -12.05146 -11.53355 -11.50356 -11.28227 -11.24932 -11.13256 -10.88555 -10.74271 -10.58602 -10.45118 -10.39076 -10.28415 -10.22305 -10.07647 -9.84164 -9.78462 -9.57244 -9.31634 -9.08465 -8.59075 -6.78715 -5.92705 -3.50177 0.50429 0.90271 1.25076 3.30860 3.35850 3.38852 3.39998 3.50507 4.32480 4.41689 4.51990 4.80564 4.86402 4.91853 5.13526 5.24506 5.27626 5.34265 5.39639 5.43806 5.61228 5.64260 5.68098 5.72545 5.88471 6.13059 6.14111 6.16464 6.24617 6.26464 6.27434 6.30917 6.40832 6.50602 6.55175 6.63557 6.68781 6.78925 6.79371 7.04471 7.10702 7.21770 7.34146 7.71112 8.36271 8.99820 9.62106 10.19521 11.04860 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.004454 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.549516 B = 6285.513472 C = 7115.262911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.016 3.984 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.554 5.554 10 C 0.151 3.849 11 C -0.590 4.590 12 S 2.458 3.542 13 O -0.946 6.946 14 O -0.955 6.955 15 C -0.651 4.651 16 C -0.028 4.028 17 C -0.145 4.145 18 C -0.077 4.077 19 C -0.143 4.143 20 C -0.026 4.026 21 C 0.164 3.836 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.135 4.135 26 H 0.261 0.739 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -7.651 8.821 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.187 4.187 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.273 5.273 10 C 0.022 3.978 11 C -0.726 4.726 12 S 2.639 3.361 13 O -0.942 6.942 14 O -0.952 6.952 15 C -0.735 4.735 16 C -0.047 4.047 17 C -0.164 4.164 18 C -0.095 4.095 19 C -0.162 4.162 20 C -0.044 4.044 21 C 0.057 3.943 22 C -0.168 4.168 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.174 4.174 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.176 -7.395 8.852 12.643 hybrid contribution 1.472 0.694 0.457 1.690 sum 6.648 -6.701 9.309 13.257 Atomic orbital electron populations 1.69994 1.05615 1.27047 1.48724 1.25214 0.94979 0.98940 0.99549 0.86546 0.79436 0.83577 0.78409 1.20538 1.21303 1.20687 1.18973 0.94438 0.85480 1.39548 0.91418 1.43857 1.51743 1.03808 1.27902 1.20830 0.91018 1.03923 0.82018 1.31279 1.16988 1.10308 1.14021 1.07488 0.77544 0.74611 0.76449 1.93522 1.77954 1.37659 1.85082 1.93487 1.61831 1.53194 1.86672 1.31084 1.19704 0.99858 1.22855 1.20992 0.93485 0.95366 0.94848 1.21276 0.98834 0.99334 0.96911 1.21414 0.96885 0.92972 0.98239 1.21299 0.99931 0.97300 0.97697 1.21042 0.91559 0.98498 0.93340 1.21172 0.92883 0.88098 0.92110 1.22741 0.97987 0.99715 0.96370 1.22423 0.95172 1.00997 0.96736 1.22268 0.98331 0.98821 0.96281 1.22620 0.98731 1.00308 0.95774 0.92886 0.87414 0.93730 0.86582 0.85148 0.84283 0.85365 0.85631 0.85304 0.84109 0.92945 0.93818 0.90287 0.90442 0.93703 0.92995 0.93119 0.90742 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.55 11.49 55.49 0.64 -22.91 16 2 C 0.02 0.40 4.95 -17.43 -0.09 0.31 16 3 Si 0.89 20.34 29.61 -169.99 -5.03 15.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.25 -6.14 7.32 -15.06 -0.11 -6.25 16 8 H 0.07 1.64 6.70 -52.49 -0.35 1.29 16 9 N -0.55 -12.31 2.32 -164.40 -0.38 -12.70 16 10 C 0.15 3.28 5.27 -4.04 -0.02 3.26 16 11 C -0.59 -10.40 6.30 37.16 0.23 -10.17 16 12 S 2.46 43.39 5.16 -107.50 -0.55 42.83 16 13 O -0.95 -19.72 17.12 -57.54 -0.99 -20.71 16 14 O -0.96 -18.59 17.12 -57.54 -0.99 -19.58 16 15 C -0.65 -9.84 5.66 -39.58 -0.22 -10.06 16 16 C -0.03 -0.38 9.47 -39.58 -0.37 -0.75 16 17 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 18 C -0.08 -0.80 10.05 -39.58 -0.40 -1.20 16 19 C -0.14 -1.66 10.05 -39.58 -0.40 -2.05 16 20 C -0.03 -0.36 9.47 -39.59 -0.37 -0.74 16 21 C 0.16 3.17 3.47 -66.81 -0.23 2.94 16 22 C -0.13 -2.43 6.17 -25.03 -0.15 -2.59 16 23 C -0.12 -2.02 6.57 -24.70 -0.16 -2.18 16 24 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 25 C -0.14 -2.31 6.15 -25.62 -0.16 -2.47 16 26 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 27 H 0.11 2.67 5.55 -51.93 -0.29 2.38 16 28 H 0.04 0.92 7.97 -51.93 -0.41 0.51 16 29 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.13 2.27 8.14 -51.92 -0.42 1.85 16 31 H 0.14 1.69 7.57 -52.49 -0.40 1.30 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 1.91 7.57 -52.48 -0.40 1.51 16 36 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.75 8.04 -51.93 -0.42 1.33 16 39 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.39 6.70 -51.93 -0.35 1.04 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -30.65 366.51 -11.56 -42.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.76 Total: 6.00 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: -3.03 Total: -35.99 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.26 Total: -35.60 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.97 Total: -40.28 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Atomic # 16 Polarization: 43.39 SS G_CDS: -0.55 Total: 42.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.65 -11.56 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156611958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.709 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds