Wall clock time and date at job start Tue Mar 31 2020 13:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99608 * 2 1 4 4 H 1.48503 * 109.46730 * 240.00029 * 3 2 1 5 5 H 1.48497 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 120.00544 * 3 2 1 7 7 C 1.38810 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 158.71954 * 7 2 1 9 9 N 1.36931 * 119.99964 * 338.71647 * 7 2 1 10 10 C 1.46497 * 120.00261 * 321.98825 * 9 7 2 11 11 C 1.53005 * 109.46676 * 269.99656 * 10 9 7 12 12 S 1.81402 * 109.46864 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54544 * 291.62611 * 12 11 10 14 14 O 1.42104 * 110.54159 * 68.37408 * 12 11 10 15 15 C 1.76198 * 104.44973 * 180.02562 * 12 11 10 16 16 C 1.38242 * 120.00000 * 269.72907 * 15 12 11 17 17 C 1.38227 * 119.99998 * 179.76582 * 16 15 12 18 18 C 1.38241 * 119.99965 * 0.50556 * 17 16 15 19 19 C 1.38237 * 120.00098 * 359.74512 * 18 17 16 20 20 C 1.38227 * 120.00216 * 89.99827 * 15 12 11 21 21 C 1.46506 * 119.99691 * 141.98177 * 9 7 2 22 22 C 1.54265 * 110.03516 * 297.70225 * 21 9 7 23 23 C 1.54963 * 104.16137 * 95.75455 * 22 21 9 24 24 C 1.54890 * 102.77570 * 37.88925 * 23 22 21 25 25 C 1.53866 * 110.03376 * 54.92072 * 21 9 7 26 26 H 0.97003 * 120.00377 * 355.04037 * 1 2 3 27 27 H 1.08999 * 109.47464 * 29.99790 * 10 9 7 28 28 H 1.08998 * 109.47471 * 149.99990 * 10 9 7 29 29 H 1.08992 * 109.47079 * 299.99388 * 11 10 9 30 30 H 1.08998 * 109.46898 * 59.99983 * 11 10 9 31 31 H 1.07998 * 119.99861 * 359.97438 * 16 15 12 32 32 H 1.08000 * 120.00612 * 180.22847 * 17 16 15 33 33 H 1.07995 * 119.99955 * 179.72561 * 18 17 16 34 34 H 1.07997 * 120.00243 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99991 * 0.02562 * 20 15 12 36 36 H 1.09001 * 110.01164 * 176.31131 * 21 9 7 37 37 H 1.09002 * 110.48514 * 214.40579 * 22 21 9 38 38 H 1.08999 * 110.48543 * 337.04095 * 22 21 9 39 39 H 1.09000 * 110.71826 * 279.57373 * 23 22 21 40 40 H 1.09002 * 110.92177 * 156.29471 * 23 22 21 41 41 H 1.08997 * 110.48498 * 203.40434 * 24 23 22 42 42 H 1.08999 * 110.59597 * 80.81761 * 24 23 22 43 43 H 1.09001 * 110.03379 * 359.94851 * 25 21 9 44 44 H 1.08999 * 110.03416 * 121.37683 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0350 -1.2337 -0.3400 9 7 1.3957 -2.3477 0.4294 10 6 0.4764 -2.3024 1.5691 11 6 1.2568 -2.5401 2.8635 12 16 0.1186 -2.4833 4.2748 13 8 -0.3751 -1.1643 4.4646 14 8 -0.7618 -3.5985 4.2507 15 6 1.1443 -2.7688 5.6787 16 6 1.3555 -4.0585 6.1297 17 6 2.1641 -4.2829 7.2281 18 6 2.7532 -3.2169 7.8820 19 6 2.5379 -1.9269 7.4342 20 6 1.7335 -1.7030 6.3325 21 6 1.6575 -3.6188 -0.2505 22 6 1.1917 -3.5384 -1.7190 23 6 2.4751 -3.1670 -2.5040 24 6 3.5721 -3.9775 -1.7701 25 6 3.1703 -3.8975 -0.2828 26 1 -0.4851 0.8369 0.0726 27 1 -0.0049 -1.3252 1.6092 28 1 -0.2824 -3.0766 1.4549 29 1 1.7378 -3.5173 2.8234 30 1 2.0155 -1.7660 2.9777 31 1 0.8913 -4.8909 5.6217 32 1 2.3321 -5.2906 7.5782 33 1 3.3814 -3.3919 8.7428 34 1 2.9979 -1.0940 7.9453 35 1 1.5647 -0.6950 5.9831 36 1 1.1393 -4.4295 0.2617 37 1 0.8075 -4.5030 -2.0506 38 1 0.4338 -2.7639 -1.8369 39 1 2.6735 -2.0974 -2.4348 40 1 2.3975 -3.4774 -3.5460 41 1 4.5506 -3.5232 -1.9260 42 1 3.5751 -5.0134 -2.1093 43 1 3.7099 -3.0866 0.2066 44 1 3.3865 -4.8434 0.2138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156611958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:14 Heat of formation + Delta-G solvation = -49.456116 kcal Electronic energy + Delta-G solvation = -25844.986511 eV Core-core repulsion = 22275.074459 eV Total energy + Delta-G solvation = -3569.912052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.01749 -39.47882 -38.10994 -36.95849 -36.28091 -33.50413 -32.27517 -31.98061 -31.33804 -29.28382 -28.35451 -26.06215 -24.26313 -23.68210 -23.09486 -21.22656 -20.74960 -19.98442 -19.04265 -18.16377 -17.28483 -17.21948 -16.90973 -16.80115 -16.33083 -16.03552 -15.73286 -15.48623 -15.04037 -14.89220 -14.47246 -14.45912 -14.14891 -13.99361 -13.63731 -13.18048 -13.14323 -13.09133 -13.04125 -12.82029 -12.59229 -12.39450 -12.19527 -12.16906 -11.98292 -11.79999 -11.75752 -11.67181 -11.61869 -11.36748 -11.25617 -11.06035 -10.47893 -10.34184 -10.02472 -8.60953 -7.80322 -5.43856 -0.87971 -0.14328 0.31848 1.45791 1.49512 1.54413 2.02412 2.47765 2.52951 2.94585 3.19950 3.27216 3.61241 3.82742 3.95145 3.98674 4.02398 4.06460 4.12023 4.15956 4.34461 4.41479 4.47789 4.64834 4.71759 4.75172 4.82728 4.96921 4.98145 4.99027 5.02159 5.09383 5.14328 5.23375 5.28875 5.30027 5.33843 5.38607 5.47703 5.58676 5.65406 5.71838 5.85037 5.89737 6.49551 7.15429 7.83817 8.37292 9.13849 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.004454 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.549516 B = 6285.513472 C = 7115.262911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.572 5.572 10 C 0.146 3.854 11 C -0.584 4.584 12 S 2.484 3.516 13 O -0.985 6.985 14 O -0.975 6.975 15 C -0.662 4.662 16 C -0.043 4.043 17 C -0.141 4.141 18 C -0.065 4.065 19 C -0.144 4.144 20 C -0.050 4.050 21 C 0.153 3.847 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.110 4.110 25 C -0.129 4.129 26 H 0.250 0.750 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 -10.330 11.201 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.234 4.234 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.085 0.915 9 N -0.291 5.291 10 C 0.017 3.983 11 C -0.719 4.719 12 S 2.670 3.330 13 O -0.982 6.982 14 O -0.972 6.972 15 C -0.751 4.751 16 C -0.062 4.062 17 C -0.159 4.159 18 C -0.083 4.083 19 C -0.163 4.163 20 C -0.069 4.069 21 C 0.047 3.953 22 C -0.168 4.168 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.168 4.168 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.164 0.836 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.059 -10.066 11.146 17.044 hybrid contribution 0.596 1.354 -0.020 1.480 sum 8.655 -8.711 11.127 16.571 Atomic orbital electron populations 1.70133 1.06782 1.26544 1.52346 1.25781 0.95405 1.01314 1.00886 0.85810 0.78242 0.80803 0.78602 1.19887 1.22569 1.20178 1.19069 0.94060 0.86065 1.37819 0.91498 1.43970 1.51531 1.04335 1.29314 1.20617 0.91457 1.02095 0.84154 1.30875 1.15926 1.12104 1.12992 1.05684 0.77164 0.73283 0.76909 1.93481 1.79146 1.39667 1.85883 1.93461 1.62949 1.53471 1.87338 1.30349 1.21160 1.01538 1.22087 1.21257 0.94323 0.94524 0.96133 1.21724 0.97227 1.01473 0.95494 1.21962 0.95780 0.91957 0.98552 1.21677 0.98829 0.99207 0.96545 1.21197 0.92855 0.97950 0.94887 1.21440 0.94843 0.87123 0.91942 1.22696 0.97595 0.99449 0.97025 1.22360 0.95214 0.99475 0.98124 1.22239 0.97744 1.00036 0.94751 1.22528 0.96319 1.00885 0.97021 0.94059 0.90903 0.93726 0.83558 0.85020 0.83586 0.81839 0.81488 0.82515 0.84885 0.91876 0.91356 0.94760 0.93660 0.91652 0.92097 0.90370 0.92622 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.83 11.49 21.65 0.25 -52.58 16 2 C -0.04 -1.94 4.95 84.86 0.42 -1.52 16 3 Si 0.94 43.56 29.61 68.60 2.03 45.60 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -12.02 7.32 84.03 0.62 -11.40 16 8 H 0.07 3.32 6.70 -2.91 -0.02 3.30 16 9 N -0.57 -26.15 2.32 -674.03 -1.56 -27.71 16 10 C 0.15 6.60 5.27 86.38 0.45 7.05 16 11 C -0.58 -20.80 6.30 71.98 0.45 -20.35 16 12 S 2.48 89.33 5.16 -56.49 -0.29 89.04 16 13 O -0.98 -43.02 17.12 -127.65 -2.19 -45.21 16 14 O -0.98 -38.28 17.12 -127.65 -2.19 -40.47 16 15 C -0.66 -19.25 5.66 22.27 0.13 -19.13 16 16 C -0.04 -1.05 9.47 22.27 0.21 -0.83 16 17 C -0.14 -2.46 10.05 22.27 0.22 -2.23 16 18 C -0.06 -1.01 10.05 22.27 0.22 -0.79 16 19 C -0.14 -2.81 10.05 22.27 0.22 -2.58 16 20 C -0.05 -1.34 9.47 22.27 0.21 -1.13 16 21 C 0.15 5.83 3.47 45.71 0.16 5.99 16 22 C -0.13 -4.87 6.17 31.69 0.20 -4.67 16 23 C -0.11 -3.91 6.57 31.91 0.21 -3.70 16 24 C -0.11 -3.16 6.83 31.67 0.22 -2.95 16 25 C -0.13 -4.13 6.15 31.32 0.19 -3.94 16 26 H 0.25 14.31 8.32 -92.71 -0.77 13.54 16 27 H 0.07 3.87 5.55 -2.39 -0.01 3.86 16 28 H 0.04 1.94 7.97 -2.39 -0.02 1.92 16 29 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 30 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 31 H 0.15 3.21 7.57 -2.91 -0.02 3.19 16 32 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.13 3.65 7.57 -2.91 -0.02 3.63 16 36 H 0.06 2.23 7.86 -2.39 -0.02 2.21 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.03 1.59 8.04 -2.39 -0.02 1.57 16 39 H 0.04 1.82 7.16 -2.39 -0.02 1.81 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 2.01 6.70 -2.39 -0.02 1.99 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.10 366.51 1.17 -69.93 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.98 Total: 23.59 kcal Atomic # 6 Polarization: -66.32 SS G_CDS: 4.14 Total: -62.18 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.31 Total: -80.30 kcal Atomic # 8 Polarization: -81.31 SS G_CDS: -4.37 Total: -85.68 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 89.33 SS G_CDS: -0.29 Total: 89.04 kcal Total: -71.10 1.17 -69.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156611958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.475 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds