Wall clock time and date at job start Tue Mar 31 2020 14:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00158 * 2 1 4 4 C 1.52999 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47369 * 64.99891 * 4 3 2 6 6 C 1.46498 * 120.00075 * 270.00202 * 5 4 3 7 7 C 1.50699 * 109.47318 * 269.99794 * 6 5 4 8 8 H 1.07999 * 119.99386 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00229 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99639 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46987 * 89.99971 * 11 9 7 13 13 H 1.48493 * 109.47024 * 210.00022 * 11 9 7 14 14 H 1.48507 * 109.47088 * 329.99964 * 11 9 7 15 15 C 1.34774 * 120.00002 * 89.99840 * 5 4 3 16 16 O 1.21281 * 120.00272 * 0.02562 * 15 5 4 17 17 C 1.50698 * 119.99944 * 179.97438 * 15 5 4 18 18 H 1.09005 * 115.55417 * 325.66985 * 17 15 5 19 19 C 1.53006 * 117.49991 * 111.38207 * 17 15 5 20 20 C 1.52999 * 60.00089 * 107.48927 * 19 17 15 21 21 H 1.09002 * 117.49803 * 107.49109 * 20 19 17 22 22 C 1.50700 * 117.51845 * 252.51832 * 20 19 17 23 23 S 1.75886 * 125.20150 * 8.74619 * 22 20 19 24 24 C 1.75883 * 90.96884 * 179.97438 * 23 22 20 25 25 C 1.33385 * 109.59737 * 359.97438 * 24 23 22 26 26 C 1.33381 * 125.20444 * 188.43425 * 22 20 19 27 27 C 1.50701 * 122.54010 * 0.02562 * 26 22 20 28 28 H 1.09002 * 109.46945 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47191 * 59.99498 * 1 2 3 30 30 H 1.09001 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46957 * 60.00213 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99912 * 3 2 1 33 33 H 1.09006 * 109.46977 * 304.99901 * 4 3 2 34 34 H 1.08996 * 109.46953 * 185.00253 * 4 3 2 35 35 H 1.09000 * 109.47156 * 29.99813 * 6 5 4 36 36 H 1.08996 * 109.47466 * 149.99713 * 6 5 4 37 37 H 0.97003 * 119.99524 * 179.97438 * 10 9 7 38 38 H 1.09003 * 117.49619 * 359.97438 * 19 17 15 39 39 H 1.08995 * 117.50015 * 214.97768 * 19 17 15 40 40 H 1.08008 * 125.20172 * 180.02562 * 24 23 22 41 41 H 1.08004 * 122.54353 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.46754 * 89.99847 * 27 26 22 43 43 H 1.08995 * 109.47273 * 209.99750 * 27 26 22 44 44 H 1.08994 * 109.47249 * 330.00405 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3427 7 6 5.5009 -1.2980 -0.9449 8 1 6.2195 -0.5462 -0.6537 9 6 5.8605 -2.6291 -0.9527 10 7 4.9852 -3.5446 -1.3068 11 14 7.5904 -3.1321 -0.4588 12 1 7.6337 -3.3853 1.0038 13 1 7.9731 -4.3685 -1.1868 14 1 8.5395 -2.0423 -0.8009 15 6 4.2616 1.3336 -2.3218 16 8 4.1548 2.5394 -2.2472 17 6 4.7150 0.6956 -3.6095 18 1 5.3261 -0.2005 -3.5007 19 6 3.7609 0.7597 -4.8040 20 6 5.0242 1.6227 -4.7867 21 1 5.8384 1.3364 -5.4525 22 6 4.8526 3.1041 -4.5695 23 16 3.3476 3.8951 -4.1190 24 6 4.1388 5.4659 -4.1182 25 6 5.4250 5.3192 -4.4394 26 6 5.8200 4.0151 -4.6838 27 6 7.2350 3.6528 -5.0548 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 3.3852 -1.3630 -0.6734 36 1 3.9120 -1.2115 -2.3668 37 1 5.2384 -4.4810 -1.3126 38 1 2.8051 1.2631 -4.6582 39 1 3.7440 -0.0943 -5.4811 40 1 3.6570 6.4056 -3.8915 41 1 6.1073 6.1541 -4.5013 42 1 7.3460 3.6850 -6.1387 43 1 7.9237 4.3633 -4.5977 44 1 7.4586 2.6481 -4.6964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156672690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:56 Heat of formation + Delta-G solvation = -14.646062 kcal Electronic energy + Delta-G solvation = -26043.769876 eV Core-core repulsion = 22475.367301 eV Total energy + Delta-G solvation = -3568.402575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66153 -38.04240 -37.35215 -35.84074 -34.74974 -32.56780 -30.53304 -29.86484 -27.35354 -26.94392 -25.99115 -24.10571 -23.04411 -22.81569 -21.67172 -21.07293 -18.70006 -17.93832 -16.81173 -16.40715 -16.31533 -15.87355 -15.64896 -15.03462 -14.83318 -14.66740 -14.23953 -14.13410 -13.63955 -13.61397 -13.16458 -12.77493 -12.41371 -12.23196 -11.98112 -11.96333 -11.75361 -11.70179 -11.55420 -11.45886 -11.31499 -11.22272 -10.90930 -10.84551 -10.57011 -10.38738 -10.14321 -10.02201 -10.01283 -9.66930 -9.37279 -9.04057 -8.48370 -7.87692 -7.70590 -7.22886 -6.10801 -4.17890 1.45189 2.20674 2.55944 3.05423 3.25745 3.32200 3.33539 3.38264 3.91775 4.17158 4.32478 4.41216 4.90235 5.13661 5.22126 5.24151 5.28197 5.40812 5.42954 5.50819 5.64015 5.67292 5.69539 5.73315 5.77948 5.82274 5.84636 5.86869 5.88081 5.98997 6.17090 6.17955 6.25382 6.39958 6.49003 6.51935 6.87475 6.92313 6.98931 7.38943 7.50812 7.66449 7.86387 8.16459 8.44801 8.87734 9.11237 9.49237 10.95443 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.005165 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.324651 B = 5419.900010 C = 7173.919933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.240 3.760 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.534 3.466 16 O -0.554 6.554 17 C -0.156 4.156 18 H 0.144 0.856 19 C -0.151 4.151 20 C -0.067 4.067 21 H 0.124 0.876 22 C -0.117 4.117 23 S 0.174 5.826 24 C -0.246 4.246 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.088 4.088 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 11.586 -5.394 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.120 3.880 7 C -0.576 4.576 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.321 3.679 16 O -0.436 6.436 17 C -0.177 4.177 18 H 0.161 0.839 19 C -0.189 4.189 20 C -0.088 4.088 21 H 0.141 0.859 22 C -0.235 4.235 23 S 0.443 5.557 24 C -0.382 4.382 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.139 11.341 -5.051 13.850 hybrid contribution 2.201 0.174 0.299 2.228 sum -3.938 11.515 -4.752 13.064 Atomic orbital electron populations 1.22674 0.82265 1.02345 0.99097 1.88065 1.18568 1.27485 1.95184 1.23021 0.95398 0.84845 0.99620 1.21289 0.90921 0.99534 0.88266 1.48093 1.63392 1.09910 1.09737 1.19448 0.97040 0.72894 0.98575 1.21555 0.97415 0.92345 1.46274 0.92331 1.24919 0.97367 0.96383 0.95066 1.69941 1.34273 1.01106 1.47485 0.86577 0.84587 0.78072 0.78707 1.20589 1.21136 1.19848 1.19634 0.76966 0.86455 0.84796 1.90799 1.55323 1.13796 1.83670 1.22495 1.04499 1.02264 0.88468 0.83871 1.23052 0.93860 1.02025 0.99981 1.20469 1.00235 0.86800 1.01246 0.85870 1.23317 0.96937 0.96500 1.06744 1.83644 1.10926 0.96125 1.65010 1.25499 0.99413 1.01456 1.11860 1.19743 0.95578 0.96644 1.04532 1.18520 0.96451 0.92397 1.06489 1.20413 0.91872 1.01876 1.00528 0.94792 0.94703 0.89901 0.93427 0.93410 0.89696 0.89540 0.93416 0.94686 0.92673 0.88878 0.87296 0.83131 0.85672 0.92167 0.92243 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.76 9.53 -35.23 -0.34 -7.09 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.31 5.81 -4.04 -0.02 2.29 16 5 N -0.58 -12.32 2.42 -175.07 -0.42 -12.75 16 6 C 0.24 5.81 4.62 -5.19 -0.02 5.79 16 7 C -0.54 -14.09 9.08 -34.44 -0.31 -14.40 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 11 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.53 10.91 7.43 -10.99 -0.08 10.83 16 16 O -0.55 -11.48 10.91 5.56 0.06 -11.42 16 17 C -0.16 -2.88 4.80 -91.77 -0.44 -3.32 16 18 H 0.14 2.87 7.00 -51.93 -0.36 2.51 16 19 C -0.15 -2.33 9.75 -26.73 -0.26 -2.59 16 20 C -0.07 -1.06 5.47 -91.77 -0.50 -1.57 16 21 H 0.12 1.71 7.54 -51.93 -0.39 1.31 16 22 C -0.12 -1.94 4.61 -36.01 -0.17 -2.10 16 23 S 0.17 2.77 18.90 -107.50 -2.03 0.74 16 24 C -0.25 -3.60 11.23 29.04 0.33 -3.27 16 25 C -0.13 -1.96 9.98 -41.21 -0.41 -2.37 16 26 C -0.13 -1.99 5.80 -106.25 -0.62 -2.61 16 27 C -0.09 -1.15 9.72 36.01 0.35 -0.80 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.63 8.07 -51.93 -0.42 1.21 16 34 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 35 H 0.05 1.26 7.11 -51.93 -0.37 0.89 16 36 H 0.04 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 39 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 44 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -29.81 372.60 -9.11 -38.92 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.80 Total: 4.17 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.91 Total: -9.88 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.31 Total: -36.75 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.27 Total: -18.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.03 Total: 0.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.81 -9.11 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156672690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.274 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds