Wall clock time and date at job start Tue Mar 31 2020 14:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00158 * 2 1 4 4 C 1.52999 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47369 * 64.99891 * 4 3 2 6 6 C 1.46498 * 120.00075 * 270.00202 * 5 4 3 7 7 C 1.50699 * 109.47318 * 269.99794 * 6 5 4 8 8 H 1.07999 * 119.99386 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00229 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99639 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46987 * 89.99971 * 11 9 7 13 13 H 1.48493 * 109.47024 * 210.00022 * 11 9 7 14 14 H 1.48507 * 109.47088 * 329.99964 * 11 9 7 15 15 C 1.34774 * 120.00002 * 89.99840 * 5 4 3 16 16 O 1.21281 * 120.00272 * 0.02562 * 15 5 4 17 17 C 1.50698 * 119.99944 * 179.97438 * 15 5 4 18 18 H 1.09005 * 115.55417 * 325.66985 * 17 15 5 19 19 C 1.53006 * 117.49991 * 111.38207 * 17 15 5 20 20 C 1.52999 * 60.00089 * 107.48927 * 19 17 15 21 21 H 1.09002 * 117.49803 * 107.49109 * 20 19 17 22 22 C 1.50700 * 117.51845 * 252.51832 * 20 19 17 23 23 S 1.75886 * 125.20150 * 8.74619 * 22 20 19 24 24 C 1.75883 * 90.96884 * 179.97438 * 23 22 20 25 25 C 1.33385 * 109.59737 * 359.97438 * 24 23 22 26 26 C 1.33381 * 125.20444 * 188.43425 * 22 20 19 27 27 C 1.50701 * 122.54010 * 0.02562 * 26 22 20 28 28 H 1.09002 * 109.46945 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47191 * 59.99498 * 1 2 3 30 30 H 1.09001 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46957 * 60.00213 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99912 * 3 2 1 33 33 H 1.09006 * 109.46977 * 304.99901 * 4 3 2 34 34 H 1.08996 * 109.46953 * 185.00253 * 4 3 2 35 35 H 1.09000 * 109.47156 * 29.99813 * 6 5 4 36 36 H 1.08996 * 109.47466 * 149.99713 * 6 5 4 37 37 H 0.97003 * 119.99524 * 179.97438 * 10 9 7 38 38 H 1.09003 * 117.49619 * 359.97438 * 19 17 15 39 39 H 1.08995 * 117.50015 * 214.97768 * 19 17 15 40 40 H 1.08008 * 125.20172 * 180.02562 * 24 23 22 41 41 H 1.08004 * 122.54353 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.46754 * 89.99847 * 27 26 22 43 43 H 1.08995 * 109.47273 * 209.99750 * 27 26 22 44 44 H 1.08994 * 109.47249 * 330.00405 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3427 7 6 5.5009 -1.2980 -0.9449 8 1 6.2195 -0.5462 -0.6537 9 6 5.8605 -2.6291 -0.9527 10 7 4.9852 -3.5446 -1.3068 11 14 7.5904 -3.1321 -0.4588 12 1 7.6337 -3.3853 1.0038 13 1 7.9731 -4.3685 -1.1868 14 1 8.5395 -2.0423 -0.8009 15 6 4.2616 1.3336 -2.3218 16 8 4.1548 2.5394 -2.2472 17 6 4.7150 0.6956 -3.6095 18 1 5.3261 -0.2005 -3.5007 19 6 3.7609 0.7597 -4.8040 20 6 5.0242 1.6227 -4.7867 21 1 5.8384 1.3364 -5.4525 22 6 4.8526 3.1041 -4.5695 23 16 3.3476 3.8951 -4.1190 24 6 4.1388 5.4659 -4.1182 25 6 5.4250 5.3192 -4.4394 26 6 5.8200 4.0151 -4.6838 27 6 7.2350 3.6528 -5.0548 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 3.3852 -1.3630 -0.6734 36 1 3.9120 -1.2115 -2.3668 37 1 5.2384 -4.4810 -1.3126 38 1 2.8051 1.2631 -4.6582 39 1 3.7440 -0.0943 -5.4811 40 1 3.6570 6.4056 -3.8915 41 1 6.1073 6.1541 -4.5013 42 1 7.3460 3.6850 -6.1387 43 1 7.9237 4.3633 -4.5977 44 1 7.4586 2.6481 -4.6964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156672690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:55 Heat of formation + Delta-G solvation = -29.841063 kcal Electronic energy + Delta-G solvation = -26044.428780 eV Core-core repulsion = 22475.367301 eV Total energy + Delta-G solvation = -3569.061479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15456 -39.31210 -38.63583 -37.18946 -36.43882 -34.53047 -31.71178 -31.31426 -28.91628 -28.38613 -27.22370 -25.55061 -24.71614 -24.18508 -23.06948 -22.31091 -20.05691 -19.39231 -18.54518 -18.03438 -17.71304 -17.22274 -17.02117 -16.51995 -16.36268 -16.00600 -15.79967 -15.42671 -15.08484 -14.78726 -14.50692 -14.24812 -13.87854 -13.58199 -13.54659 -13.29173 -13.13029 -13.08352 -12.86287 -12.80226 -12.73350 -12.64523 -12.54021 -12.35151 -12.11411 -11.93974 -11.67125 -11.59994 -11.33782 -11.26360 -10.71346 -10.61676 -10.42070 -9.41222 -9.04169 -8.55245 -8.14888 -6.30311 0.25391 1.03518 1.37714 1.41437 1.43058 1.52721 1.74455 1.98456 2.33874 2.47417 2.92945 3.02749 3.14036 3.59519 3.77084 3.92227 4.12208 4.16605 4.22383 4.26486 4.36212 4.42574 4.52531 4.55057 4.64823 4.64997 4.69051 4.76047 4.81802 4.83811 4.90275 4.90910 5.01963 5.04716 5.09724 5.20243 5.35826 5.36681 5.70847 5.73094 5.85366 5.94381 6.13541 6.29556 6.66575 6.89829 7.37655 7.51584 8.89742 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.005165 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.324651 B = 5419.900010 C = 7173.919933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.058 3.942 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.265 3.735 7 C -0.545 4.545 8 H 0.048 0.952 9 C 0.022 3.978 10 N -0.919 5.919 11 Si 0.954 3.046 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.271 1.271 15 C 0.529 3.471 16 O -0.557 6.557 17 C -0.184 4.184 18 H 0.122 0.878 19 C -0.136 4.136 20 C -0.052 4.052 21 H 0.143 0.857 22 C -0.143 4.143 23 S 0.142 5.858 24 C -0.241 4.241 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.087 4.087 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.176 0.824 41 H 0.150 0.850 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 12.884 -5.866 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.019 4.019 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.143 3.857 7 C -0.584 4.584 8 H 0.067 0.933 9 C -0.178 4.178 10 N -0.558 5.558 11 Si 0.780 3.220 12 H -0.202 1.202 13 H -0.204 1.204 14 H -0.196 1.196 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.206 4.206 18 H 0.139 0.861 19 C -0.173 4.173 20 C -0.072 4.072 21 H 0.161 0.839 22 C -0.261 4.261 23 S 0.411 5.589 24 C -0.377 4.377 25 C -0.175 4.175 26 C -0.144 4.144 27 C -0.146 4.146 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.193 0.807 41 H 0.168 0.832 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.529 12.663 -5.523 14.880 hybrid contribution 1.974 -0.136 0.445 2.028 sum -3.555 12.527 -5.078 13.977 Atomic orbital electron populations 1.22865 0.80045 1.03298 1.00584 1.88014 1.21128 1.28346 1.95465 1.22906 0.93633 0.84653 1.00705 1.21406 0.92826 0.99165 0.86970 1.48071 1.64197 1.08755 1.10986 1.18923 0.95322 0.74650 0.96767 1.21714 0.98072 0.92399 1.46171 0.93345 1.25628 1.00887 0.96333 0.94944 1.70037 1.36029 1.01436 1.48316 0.85613 0.80220 0.77781 0.78390 1.20216 1.20418 1.19601 1.19952 0.76606 0.86487 0.85150 1.90796 1.55496 1.13753 1.83820 1.22355 1.06661 1.02697 0.88880 0.86054 1.23151 0.93546 1.02541 0.98102 1.20584 1.00828 0.86490 0.99269 0.83904 1.23475 0.97368 0.96866 1.08399 1.83695 1.11737 0.97706 1.65743 1.25838 0.99416 1.01520 1.10925 1.20073 0.96090 0.97076 1.04238 1.18968 0.97374 0.92749 1.05311 1.20468 0.90605 1.01581 1.01976 0.92464 0.93945 0.89333 0.90365 0.94024 0.90805 0.89041 0.96037 0.96085 0.92450 0.89113 0.85128 0.80685 0.83202 0.90090 0.91066 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -14.88 9.53 -148.98 -1.42 -16.30 16 3 C 0.06 1.92 6.28 71.98 0.45 2.37 16 4 C 0.12 4.54 5.81 86.38 0.50 5.05 16 5 N -0.59 -25.71 2.42 -826.18 -2.00 -27.71 16 6 C 0.26 13.28 4.62 85.63 0.40 13.68 16 7 C -0.54 -29.28 9.08 25.60 0.23 -29.05 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.02 1.20 5.46 84.66 0.46 1.66 16 10 N -0.92 -51.86 13.29 21.45 0.28 -51.57 16 11 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.53 22.03 7.43 87.66 0.65 22.68 16 16 O -0.56 -23.15 10.91 -3.03 -0.03 -23.18 16 17 C -0.18 -6.92 4.80 -11.54 -0.06 -6.98 16 18 H 0.12 5.07 7.00 -2.38 -0.02 5.05 16 19 C -0.14 -4.13 9.75 30.60 0.30 -3.83 16 20 C -0.05 -1.60 5.47 -11.54 -0.06 -1.66 16 21 H 0.14 3.76 7.54 -2.39 -0.02 3.75 16 22 C -0.14 -4.61 4.61 24.59 0.11 -4.49 16 23 S 0.14 4.43 18.90 -56.49 -1.07 3.37 16 24 C -0.24 -6.57 11.23 66.72 0.75 -5.82 16 25 C -0.14 -3.88 9.98 21.22 0.21 -3.67 16 26 C -0.13 -3.90 5.80 -20.92 -0.12 -4.02 16 27 C -0.09 -2.10 9.72 71.24 0.69 -1.41 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 2.92 8.07 -2.38 -0.02 2.90 16 34 H 0.09 3.32 7.42 -2.39 -0.02 3.31 16 35 H 0.02 1.19 7.11 -2.39 -0.02 1.17 16 36 H 0.02 1.11 6.64 -2.39 -0.02 1.09 16 37 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.09 2.81 7.27 -2.39 -0.02 2.79 16 39 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 41 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 44 H 0.05 1.44 7.24 -2.39 -0.02 1.42 16 Total: -1.00 -64.14 372.60 4.55 -59.59 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.99 Total: 24.65 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.77 Total: -13.51 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.71 Total: -79.28 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.45 Total: -39.48 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.07 Total: 3.37 kcal Total: -64.14 4.55 -59.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156672690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.747 kcal (2) G-P(sol) polarization free energy of solvation -64.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds