Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99934 * 2 1 4 4 C 1.53006 * 109.47262 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47023 * 64.99879 * 4 3 2 6 6 C 1.46506 * 119.99821 * 89.99969 * 5 4 3 7 7 C 1.50697 * 109.46529 * 90.00268 * 6 5 4 8 8 H 1.08002 * 120.00599 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99675 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00210 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00019 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46845 * 269.99914 * 11 9 7 13 13 H 1.48503 * 109.47399 * 29.99403 * 11 9 7 14 14 H 1.48498 * 109.47295 * 150.00010 * 11 9 7 15 15 C 1.34779 * 120.00015 * 270.00519 * 5 4 3 16 16 O 1.21280 * 119.99689 * 179.97438 * 15 5 4 17 17 C 1.50693 * 120.00298 * 359.97438 * 15 5 4 18 18 H 1.09010 * 115.54928 * 34.33025 * 17 15 5 19 19 C 1.53001 * 117.50248 * 248.62566 * 17 15 5 20 20 C 1.52993 * 59.99959 * 252.50839 * 19 17 15 21 21 H 1.09007 * 117.50020 * 107.48749 * 20 19 17 22 22 C 1.50699 * 117.49758 * 252.50994 * 20 19 17 23 23 S 1.75886 * 125.20353 * 8.31414 * 22 20 19 24 24 C 1.75884 * 90.97147 * 179.97438 * 23 22 20 25 25 C 1.33390 * 109.59152 * 0.31354 * 24 23 22 26 26 C 1.33392 * 125.20341 * 188.62879 * 22 20 19 27 27 C 1.50699 * 122.54000 * 359.94573 * 26 22 20 28 28 H 1.09001 * 109.47118 * 59.99663 * 1 2 3 29 29 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46984 * 300.00459 * 1 2 3 31 31 H 1.08999 * 109.47207 * 60.00300 * 3 2 1 32 32 H 1.08995 * 109.47558 * 299.99698 * 3 2 1 33 33 H 1.09003 * 109.46944 * 305.00228 * 4 3 2 34 34 H 1.08998 * 109.47147 * 185.00299 * 4 3 2 35 35 H 1.08995 * 109.46912 * 330.00371 * 6 5 4 36 36 H 1.09007 * 109.46641 * 210.00003 * 6 5 4 37 37 H 0.96998 * 119.99640 * 180.02562 * 10 9 7 38 38 H 1.09004 * 117.49200 * 0.02562 * 19 17 15 39 39 H 1.09004 * 117.49981 * 145.01576 * 19 17 15 40 40 H 1.07999 * 125.20159 * 180.10662 * 24 23 22 41 41 H 1.08001 * 122.53616 * 179.73382 * 25 24 23 42 42 H 1.09000 * 109.46656 * 90.00378 * 27 26 22 43 43 H 1.08996 * 109.46976 * 210.00694 * 27 26 22 44 44 H 1.08996 * 109.47176 * 330.00975 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2883 1.3999 -2.4130 7 6 5.7462 1.7803 -2.3816 8 1 6.3776 1.4337 -1.5769 9 6 6.2742 2.5699 -3.3810 10 7 7.5464 2.9023 -3.3535 11 14 5.1823 3.1687 -4.7734 12 1 5.2075 2.1810 -5.8820 13 1 3.7903 3.3231 -4.2796 14 1 5.6811 4.4780 -5.2655 15 6 4.0959 -0.7760 -1.3331 16 8 4.4607 -1.2898 -2.3693 17 6 3.7759 -1.6357 -0.1376 18 1 2.9660 -1.2758 0.4971 19 6 4.9388 -2.3603 0.5432 20 6 3.9309 -3.1497 -0.2944 21 1 4.2644 -3.5240 -1.2623 22 6 2.9526 -4.0292 0.4408 23 16 2.7361 -4.0670 2.1859 24 6 1.4874 -5.2963 2.0344 25 6 1.3142 -5.6017 0.7476 26 6 2.1225 -4.9022 -0.1319 27 6 2.0687 -5.1112 -1.6233 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1766 0.0903 35 1 3.6768 2.3018 -2.3862 36 1 4.0772 0.8446 -3.3270 37 1 7.9177 3.4581 -4.0564 38 1 5.9355 -2.2147 0.1266 39 1 4.8943 -2.4770 1.6261 40 1 0.9463 -5.7388 2.8577 41 1 0.5976 -6.3390 0.4169 42 1 2.7728 -5.8938 -1.9061 43 1 1.0605 -5.4076 -1.9126 44 1 2.3341 -4.1834 -2.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156672942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = -40.521809 kcal Electronic energy + Delta-G solvation = -25733.007661 eV Core-core repulsion = 22163.483030 eV Total energy + Delta-G solvation = -3569.524631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18973 -39.43963 -38.76172 -37.42283 -36.47184 -34.72597 -31.76731 -31.38442 -29.72730 -28.55797 -27.17010 -25.80032 -24.30554 -24.06837 -23.20121 -22.40403 -19.83954 -19.54117 -19.10357 -18.33026 -17.84126 -17.53972 -16.85257 -16.74865 -16.34150 -16.09116 -15.89375 -15.41585 -15.05478 -14.87251 -14.66900 -14.49589 -14.08383 -13.70489 -13.55038 -13.43938 -13.23376 -13.15528 -13.08268 -12.93681 -12.77299 -12.61624 -12.46909 -12.41436 -12.11920 -12.03836 -11.76209 -11.70155 -11.54496 -11.39291 -10.83694 -10.66960 -10.55424 -9.43636 -9.35032 -9.16796 -8.34245 -6.39193 0.06731 0.73454 1.13861 1.31080 1.35772 1.43659 1.61770 1.81747 2.25313 2.30247 2.87184 2.93929 2.99831 3.46511 3.69942 3.82435 4.05413 4.12742 4.15546 4.17992 4.27571 4.47297 4.54063 4.58364 4.59091 4.59556 4.67691 4.67905 4.73851 4.76318 4.80574 4.87816 4.89092 4.98049 5.01117 5.10201 5.15305 5.21617 5.44772 5.60471 5.61637 5.66044 6.22393 6.30309 6.62034 6.67591 7.21157 7.42450 8.82608 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.003700 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.587434 B = 7566.611336 C = 8037.891041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.047 3.953 4 C 0.106 3.894 5 N -0.592 5.592 6 C 0.227 3.773 7 C -0.535 4.535 8 H 0.030 0.970 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.238 1.238 14 H -0.273 1.273 15 C 0.539 3.461 16 O -0.597 6.597 17 C -0.162 4.162 18 H 0.158 0.842 19 C -0.141 4.141 20 C -0.054 4.054 21 H 0.107 0.893 22 C -0.163 4.163 23 S 0.105 5.895 24 C -0.209 4.209 25 C -0.136 4.136 26 C -0.110 4.110 27 C -0.095 4.095 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.014 0.986 37 H 0.269 0.731 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.192 0.808 41 H 0.161 0.839 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.697 -12.277 14.221 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C -0.031 4.031 4 C -0.017 4.017 5 N -0.321 5.321 6 C 0.105 3.895 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.162 1.162 14 H -0.198 1.198 15 C 0.328 3.672 16 O -0.479 6.479 17 C -0.183 4.183 18 H 0.175 0.825 19 C -0.179 4.179 20 C -0.074 4.074 21 H 0.125 0.875 22 C -0.280 4.280 23 S 0.370 5.630 24 C -0.344 4.344 25 C -0.166 4.166 26 C -0.123 4.123 27 C -0.154 4.154 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.209 0.791 41 H 0.179 0.821 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.629 -11.806 14.871 25.910 hybrid contribution -0.382 0.058 -2.261 2.294 sum -18.011 -11.749 12.610 24.928 Atomic orbital electron populations 1.22829 0.79958 1.03132 1.00660 1.87843 1.21065 1.28123 1.95540 1.23072 0.92983 0.85142 1.01862 1.21872 0.93237 1.00671 0.85912 1.47776 1.64844 1.05502 1.13993 1.19309 0.94502 0.90292 0.85398 1.21542 0.94856 1.31165 1.09786 0.95116 1.25809 0.96393 0.95826 1.00426 1.70045 1.14464 1.38417 1.35436 0.85757 0.80439 0.77928 0.79071 1.20444 1.16160 1.19798 1.20095 0.75783 0.82664 0.88615 1.90602 1.49647 1.73988 1.33642 1.22502 1.03935 0.92787 0.99053 0.82514 1.23152 0.93985 1.00825 0.99901 1.20256 0.98092 0.89459 0.99627 0.87467 1.23471 1.03744 1.03945 0.96835 1.84034 1.36604 1.39772 1.02580 1.25930 1.03718 1.03424 1.01364 1.20206 1.01934 1.02518 0.91979 1.19079 0.97326 0.97715 0.98149 1.20524 1.03274 1.01742 0.89897 0.94417 0.89526 0.92073 0.88807 0.93637 0.88611 0.88074 0.93162 0.96794 0.92248 0.89091 0.85454 0.79115 0.82149 0.90766 0.89825 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -10.54 7.65 -148.98 -1.14 -11.67 16 3 C 0.05 1.14 6.28 71.98 0.45 1.59 16 4 C 0.11 3.26 5.70 86.38 0.49 3.75 16 5 N -0.59 -25.17 2.44 -826.14 -2.02 -27.19 16 6 C 0.23 11.31 4.23 85.63 0.36 11.67 16 7 C -0.53 -31.78 9.94 25.60 0.25 -31.53 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.81 5.47 84.65 0.46 1.27 16 10 N -0.94 -59.89 13.96 21.45 0.30 -59.60 16 11 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 C 0.54 23.78 7.16 87.65 0.63 24.41 16 16 O -0.60 -31.96 15.84 -3.03 -0.05 -32.01 16 17 C -0.16 -5.39 4.13 -11.54 -0.05 -5.44 16 18 H 0.16 4.70 4.96 -2.38 -0.01 4.69 16 19 C -0.14 -4.18 9.75 30.59 0.30 -3.88 16 20 C -0.05 -1.68 4.98 -11.54 -0.06 -1.74 16 21 H 0.11 3.86 7.06 -2.38 -0.02 3.84 16 22 C -0.16 -4.22 6.13 24.59 0.15 -4.07 16 23 S 0.10 2.10 22.16 -56.49 -1.25 0.85 16 24 C -0.21 -3.41 11.23 66.72 0.75 -2.66 16 25 C -0.14 -2.47 9.98 21.22 0.21 -2.25 16 26 C -0.11 -2.59 5.80 -20.92 -0.12 -2.71 16 27 C -0.10 -2.15 9.72 71.24 0.69 -1.46 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.61 6.64 -2.39 -0.02 2.60 16 34 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 35 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 36 H 0.01 0.76 6.85 -2.38 -0.02 0.74 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.13 3.00 7.26 -2.38 -0.02 2.98 16 40 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 44 H 0.05 1.30 7.24 -2.39 -0.02 1.29 16 Total: -1.00 -78.15 374.60 4.44 -73.71 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.94 Total: 20.43 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 5.78 Total: -11.21 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.72 Total: -86.78 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.19 Total: -43.68 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.25 Total: 0.85 kcal Total: -78.15 4.44 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156672942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.191 kcal (2) G-P(sol) polarization free energy of solvation -78.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds