Wall clock time and date at job start Tue Mar 31 2020 14:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99812 * 2 1 4 4 C 1.52999 * 109.46935 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47507 * 64.99393 * 4 3 2 6 6 C 1.46496 * 119.99884 * 270.00494 * 5 4 3 7 7 C 1.50703 * 109.46871 * 269.99501 * 6 5 4 8 8 H 1.07998 * 120.00222 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00011 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99586 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47471 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47050 * 120.00144 * 11 9 7 14 14 H 1.48498 * 109.47220 * 239.99721 * 11 9 7 15 15 C 1.34777 * 119.99858 * 89.99839 * 5 4 3 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 5 4 17 17 C 1.50706 * 119.99762 * 0.02562 * 15 5 4 18 18 H 1.08996 * 115.55128 * 34.33271 * 17 15 5 19 19 C 1.53001 * 117.49756 * 248.61806 * 17 15 5 20 20 C 1.52999 * 59.99986 * 252.51526 * 19 17 15 21 21 H 1.09004 * 117.50109 * 252.51157 * 20 19 17 22 22 C 1.50699 * 117.52071 * 107.48454 * 20 19 17 23 23 S 1.75886 * 125.20158 * 351.06111 * 22 20 19 24 24 C 1.75883 * 90.97075 * 179.97438 * 23 22 20 25 25 C 1.33396 * 109.59307 * 0.31318 * 24 23 22 26 26 C 1.33393 * 125.20305 * 171.37251 * 22 20 19 27 27 C 1.50698 * 122.54072 * 359.97438 * 26 22 20 28 28 H 1.09004 * 109.46976 * 60.00522 * 1 2 3 29 29 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47002 * 300.00738 * 1 2 3 31 31 H 1.08994 * 109.47886 * 59.99515 * 3 2 1 32 32 H 1.09004 * 109.47028 * 299.99048 * 3 2 1 33 33 H 1.09005 * 109.46948 * 304.99266 * 4 3 2 34 34 H 1.08997 * 109.47177 * 184.99709 * 4 3 2 35 35 H 1.09000 * 109.47710 * 29.99936 * 6 5 4 36 36 H 1.09000 * 109.46883 * 149.99979 * 6 5 4 37 37 H 0.97008 * 119.99716 * 180.02562 * 10 9 7 38 38 H 1.09004 * 117.49834 * 0.02562 * 19 17 15 39 39 H 1.08997 * 117.49999 * 145.02096 * 19 17 15 40 40 H 1.07997 * 125.21095 * 180.02562 * 24 23 22 41 41 H 1.07998 * 122.54077 * 179.73335 * 25 24 23 42 42 H 1.09006 * 109.47029 * 90.00108 * 27 26 22 43 43 H 1.08998 * 109.47105 * 210.00050 * 27 26 22 44 44 H 1.09001 * 109.47020 * 330.00582 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3426 7 6 5.5010 -1.2979 -0.9447 8 1 6.2196 -0.5460 -0.6535 9 6 5.8606 -2.6289 -0.9523 10 7 4.9857 -3.5444 -1.3073 11 14 7.5909 -3.1317 -0.4598 12 1 8.3764 -1.9220 -0.1066 13 1 7.5274 -4.0400 0.7133 14 1 8.2443 -3.8331 -1.5939 15 6 4.2615 1.3335 -2.3218 16 8 4.6256 0.8200 -3.3585 17 6 4.1287 2.8319 -2.2291 18 1 4.3747 3.2666 -1.2603 19 6 3.0107 3.4933 -3.0375 20 6 4.4679 3.6496 -3.4770 21 1 4.9367 4.6225 -3.3291 22 6 4.9097 2.8952 -4.7045 23 16 3.9563 1.6797 -5.5454 24 6 5.2433 1.4397 -6.7200 25 6 6.2702 2.2395 -6.4280 26 6 6.0860 3.0430 -5.3160 27 6 7.1351 4.0107 -4.8324 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8465 0.8898 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3630 -0.6732 36 1 3.9120 -1.2115 -2.3666 37 1 5.2386 -4.4809 -1.3123 38 1 2.3710 2.8447 -3.6360 39 1 2.5207 4.3634 -2.6005 40 1 5.2095 0.7472 -7.5480 41 1 7.1768 2.2586 -7.0147 42 1 7.7903 3.5100 -4.1194 43 1 7.7225 4.3633 -5.6801 44 1 6.6513 4.8587 -4.3476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156673058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:04 Heat of formation + Delta-G solvation = -7.665042 kcal Electronic energy + Delta-G solvation = -26053.867680 eV Core-core repulsion = 22485.767825 eV Total energy + Delta-G solvation = -3568.099855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71193 -38.00144 -37.40006 -35.95552 -34.66391 -32.56950 -30.48316 -29.53196 -27.70712 -26.98646 -25.91798 -24.23993 -23.08861 -22.64545 -21.83334 -21.12509 -18.75386 -17.99868 -16.85672 -16.49637 -16.32466 -15.82249 -15.65026 -15.01136 -14.93189 -14.61348 -14.40448 -14.01858 -13.71824 -13.49245 -13.09707 -12.74405 -12.66323 -12.09999 -12.06928 -12.00883 -11.90810 -11.71698 -11.60807 -11.47597 -11.28802 -11.19282 -10.87137 -10.77842 -10.60931 -10.31640 -10.24547 -10.08650 -10.00086 -9.49608 -9.40536 -8.90550 -8.31710 -7.85553 -7.65236 -7.10937 -5.92781 -3.96274 1.48955 2.27958 2.61339 3.08142 3.35104 3.35565 3.42806 3.47047 3.93283 4.04671 4.18106 4.53187 4.69805 4.87510 4.94765 5.22904 5.31898 5.32399 5.37375 5.41410 5.44614 5.54718 5.57771 5.59079 5.62555 5.67926 5.75854 5.78271 5.85601 5.87852 5.91525 6.00238 6.06857 6.19943 6.28849 6.56874 6.89387 7.03064 7.32051 7.43989 7.63836 7.70507 8.05562 8.37929 8.57091 9.03029 9.23233 9.67609 11.15059 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.005623 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.661709 B = 4978.590833 C = 6787.415491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.045 3.955 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.252 3.748 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.520 3.480 16 O -0.513 6.513 17 C -0.177 4.177 18 H 0.123 0.877 19 C -0.155 4.155 20 C -0.053 4.053 21 H 0.123 0.877 22 C -0.136 4.136 23 S 0.186 5.814 24 C -0.237 4.237 25 C -0.138 4.138 26 C -0.119 4.119 27 C -0.086 4.086 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 16.893 -2.480 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.033 4.033 4 C -0.013 4.013 5 N -0.315 5.315 6 C 0.133 3.867 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.305 3.695 16 O -0.390 6.390 17 C -0.199 4.199 18 H 0.141 0.859 19 C -0.193 4.193 20 C -0.073 4.073 21 H 0.141 0.859 22 C -0.254 4.254 23 S 0.456 5.544 24 C -0.373 4.373 25 C -0.170 4.170 26 C -0.132 4.132 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.361 15.533 -2.878 17.428 hybrid contribution 2.234 0.278 0.333 2.275 sum -5.127 15.811 -2.545 16.816 Atomic orbital electron populations 1.22691 0.82140 1.02543 0.99046 1.88107 1.18635 1.27027 1.95128 1.23103 0.95384 0.85339 0.99450 1.21503 0.91154 0.98897 0.89731 1.48142 1.64049 1.09709 1.09572 1.19273 0.96551 0.72071 0.98778 1.21508 0.97495 0.92127 1.44873 0.92712 1.24900 0.97197 0.96474 0.95498 1.69960 1.34167 1.00853 1.48356 0.86518 0.84861 0.78438 0.78030 1.19918 1.21075 1.21031 1.19482 0.79085 0.86644 0.84251 1.90876 1.45964 1.74563 1.27620 1.22618 1.05534 0.94650 0.97073 0.85949 1.23098 0.91114 1.02481 1.02586 1.20357 0.97717 0.98443 0.90809 0.85915 1.23227 0.98969 1.02749 1.00441 1.83731 1.17956 1.36245 1.16427 1.25554 1.00341 1.06569 1.04867 1.19728 0.99627 0.98684 0.98925 1.18490 0.95373 1.01699 0.97601 1.20405 0.96564 0.96904 1.00625 0.94647 0.89821 0.94743 0.93326 0.93593 0.89247 0.90204 0.93824 0.94295 0.92998 0.88434 0.87501 0.82906 0.85569 0.91724 0.92355 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.42 9.53 -35.23 -0.34 -6.76 16 3 C 0.05 0.64 6.28 37.16 0.23 0.88 16 4 C 0.11 1.83 5.64 -4.04 -0.02 1.81 16 5 N -0.58 -12.43 2.42 -175.06 -0.42 -12.86 16 6 C 0.25 6.77 4.98 -5.19 -0.03 6.74 16 7 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 8 H 0.05 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 11 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.52 10.63 7.43 -10.98 -0.08 10.55 16 16 O -0.51 -12.29 10.89 5.56 0.06 -12.23 16 17 C -0.18 -2.60 5.29 -91.77 -0.49 -3.09 16 18 H 0.12 1.48 6.44 -51.93 -0.33 1.15 16 19 C -0.15 -1.88 9.75 -26.73 -0.26 -2.14 16 20 C -0.05 -0.73 5.75 -91.77 -0.53 -1.25 16 21 H 0.12 1.35 6.93 -51.93 -0.36 0.99 16 22 C -0.14 -2.24 4.62 -36.00 -0.17 -2.41 16 23 S 0.19 3.24 18.88 -107.50 -2.03 1.22 16 24 C -0.24 -3.90 11.23 29.04 0.33 -3.58 16 25 C -0.14 -2.21 9.98 -41.21 -0.41 -2.62 16 26 C -0.12 -1.92 5.80 -106.25 -0.62 -2.53 16 27 C -0.09 -1.10 9.87 36.00 0.36 -0.74 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 34 H 0.08 1.03 5.99 -51.93 -0.31 0.72 16 35 H 0.04 1.23 7.11 -51.93 -0.37 0.86 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.10 1.32 7.27 -51.93 -0.38 0.95 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.06 0.65 6.75 -51.93 -0.35 0.29 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -35.12 371.68 -9.08 -44.20 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.68 Total: 0.56 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.99 Total: -10.64 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.28 Total: -18.98 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.03 Total: 1.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.12 -9.08 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156673058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.533 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds