Wall clock time and date at job start Tue Mar 31 2020 14:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99812 * 2 1 4 4 C 1.52999 * 109.46935 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47507 * 64.99393 * 4 3 2 6 6 C 1.46496 * 119.99884 * 270.00494 * 5 4 3 7 7 C 1.50703 * 109.46871 * 269.99501 * 6 5 4 8 8 H 1.07998 * 120.00222 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00011 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99586 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47471 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47050 * 120.00144 * 11 9 7 14 14 H 1.48498 * 109.47220 * 239.99721 * 11 9 7 15 15 C 1.34777 * 119.99858 * 89.99839 * 5 4 3 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 5 4 17 17 C 1.50706 * 119.99762 * 0.02562 * 15 5 4 18 18 H 1.08996 * 115.55128 * 34.33271 * 17 15 5 19 19 C 1.53001 * 117.49756 * 248.61806 * 17 15 5 20 20 C 1.52999 * 59.99986 * 252.51526 * 19 17 15 21 21 H 1.09004 * 117.50109 * 252.51157 * 20 19 17 22 22 C 1.50699 * 117.52071 * 107.48454 * 20 19 17 23 23 S 1.75886 * 125.20158 * 351.06111 * 22 20 19 24 24 C 1.75883 * 90.97075 * 179.97438 * 23 22 20 25 25 C 1.33396 * 109.59307 * 0.31318 * 24 23 22 26 26 C 1.33393 * 125.20305 * 171.37251 * 22 20 19 27 27 C 1.50698 * 122.54072 * 359.97438 * 26 22 20 28 28 H 1.09004 * 109.46976 * 60.00522 * 1 2 3 29 29 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47002 * 300.00738 * 1 2 3 31 31 H 1.08994 * 109.47886 * 59.99515 * 3 2 1 32 32 H 1.09004 * 109.47028 * 299.99048 * 3 2 1 33 33 H 1.09005 * 109.46948 * 304.99266 * 4 3 2 34 34 H 1.08997 * 109.47177 * 184.99709 * 4 3 2 35 35 H 1.09000 * 109.47710 * 29.99936 * 6 5 4 36 36 H 1.09000 * 109.46883 * 149.99979 * 6 5 4 37 37 H 0.97008 * 119.99716 * 180.02562 * 10 9 7 38 38 H 1.09004 * 117.49834 * 0.02562 * 19 17 15 39 39 H 1.08997 * 117.49999 * 145.02096 * 19 17 15 40 40 H 1.07997 * 125.21095 * 180.02562 * 24 23 22 41 41 H 1.07998 * 122.54077 * 179.73335 * 25 24 23 42 42 H 1.09006 * 109.47029 * 90.00108 * 27 26 22 43 43 H 1.08998 * 109.47105 * 210.00050 * 27 26 22 44 44 H 1.09001 * 109.47020 * 330.00582 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3426 7 6 5.5010 -1.2979 -0.9447 8 1 6.2196 -0.5460 -0.6535 9 6 5.8606 -2.6289 -0.9523 10 7 4.9857 -3.5444 -1.3073 11 14 7.5909 -3.1317 -0.4598 12 1 8.3764 -1.9220 -0.1066 13 1 7.5274 -4.0400 0.7133 14 1 8.2443 -3.8331 -1.5939 15 6 4.2615 1.3335 -2.3218 16 8 4.6256 0.8200 -3.3585 17 6 4.1287 2.8319 -2.2291 18 1 4.3747 3.2666 -1.2603 19 6 3.0107 3.4933 -3.0375 20 6 4.4679 3.6496 -3.4770 21 1 4.9367 4.6225 -3.3291 22 6 4.9097 2.8952 -4.7045 23 16 3.9563 1.6797 -5.5454 24 6 5.2433 1.4397 -6.7200 25 6 6.2702 2.2395 -6.4280 26 6 6.0860 3.0430 -5.3160 27 6 7.1351 4.0107 -4.8324 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8465 0.8898 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3630 -0.6732 36 1 3.9120 -1.2115 -2.3666 37 1 5.2386 -4.4809 -1.3123 38 1 2.3710 2.8447 -3.6360 39 1 2.5207 4.3634 -2.6005 40 1 5.2095 0.7472 -7.5480 41 1 7.1768 2.2586 -7.0147 42 1 7.7903 3.5100 -4.1194 43 1 7.7225 4.3633 -5.6801 44 1 6.6513 4.8587 -4.3476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156673058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:04 Heat of formation + Delta-G solvation = -29.522208 kcal Electronic energy + Delta-G solvation = -26054.815478 eV Core-core repulsion = 22485.767825 eV Total energy + Delta-G solvation = -3569.047653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09884 -39.23369 -38.63505 -37.22566 -36.27107 -34.72749 -31.63661 -31.05083 -29.30407 -28.31257 -27.06797 -25.95407 -24.24382 -24.00135 -23.33942 -22.33104 -20.03376 -19.38312 -18.60328 -18.10929 -17.76068 -17.05652 -16.98356 -16.54276 -16.30746 -16.02497 -15.77074 -15.45990 -15.11242 -14.68870 -14.49038 -14.22329 -13.80240 -13.77615 -13.46667 -13.30930 -13.09044 -13.01494 -12.90894 -12.89222 -12.71909 -12.58136 -12.55634 -12.30519 -12.15512 -11.92356 -11.65148 -11.63730 -11.33059 -11.24496 -10.62364 -10.52266 -10.41132 -9.37743 -9.04284 -8.54222 -8.17080 -6.32275 0.24597 1.03866 1.33316 1.35846 1.37032 1.47496 1.81043 2.01912 2.33456 2.50182 2.97016 3.05640 3.11301 3.56442 3.76255 3.90519 4.05842 4.20010 4.23245 4.33130 4.38922 4.46165 4.55486 4.58384 4.63532 4.65737 4.68815 4.70321 4.83251 4.86574 4.91067 4.93412 5.03483 5.08834 5.22552 5.27794 5.33662 5.34836 5.63822 5.70081 5.86635 5.95976 6.14243 6.38977 6.77783 6.96913 7.33738 7.67064 8.88688 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.005623 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.661709 B = 4978.590833 C = 6787.415491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.048 3.952 4 C 0.106 3.894 5 N -0.594 5.594 6 C 0.278 3.722 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.266 1.266 13 H -0.269 1.269 14 H -0.284 1.284 15 C 0.505 3.495 16 O -0.559 6.559 17 C -0.182 4.182 18 H 0.160 0.840 19 C -0.130 4.130 20 C -0.058 4.058 21 H 0.162 0.838 22 C -0.140 4.140 23 S 0.127 5.873 24 C -0.253 4.253 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.082 4.082 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.021 0.979 36 H -0.014 1.014 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 20.366 -0.896 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.030 4.030 4 C -0.017 4.017 5 N -0.324 5.324 6 C 0.157 3.843 7 C -0.574 4.574 8 H 0.069 0.931 9 C -0.193 4.193 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.210 1.210 15 C 0.294 3.706 16 O -0.439 6.439 17 C -0.203 4.203 18 H 0.177 0.823 19 C -0.168 4.168 20 C -0.078 4.078 21 H 0.179 0.821 22 C -0.258 4.258 23 S 0.397 5.603 24 C -0.389 4.389 25 C -0.177 4.177 26 C -0.149 4.149 27 C -0.141 4.141 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.039 0.961 36 H 0.004 0.996 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.174 0.826 40 H 0.183 0.817 41 H 0.165 0.835 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.626 19.050 -1.271 20.210 hybrid contribution 1.960 -0.827 -0.217 2.139 sum -4.666 18.223 -1.488 18.870 Atomic orbital electron populations 1.22830 0.80179 1.02884 1.00788 1.88049 1.21045 1.29294 1.95523 1.23171 0.93497 0.84576 1.01707 1.21843 0.93210 1.00081 0.86567 1.48083 1.64768 1.07534 1.12051 1.18505 0.94993 0.76147 0.94685 1.21786 0.98347 0.92404 1.44832 0.93134 1.25843 1.01625 0.96515 0.95335 1.70094 1.36418 1.01294 1.49226 0.85427 0.79399 0.78361 0.77976 1.19021 1.19444 1.20982 1.20552 0.77735 0.89294 0.83061 1.90874 1.47626 1.76126 1.29232 1.22535 1.08372 0.90052 0.99362 0.82296 1.23261 0.90144 1.02802 1.00557 1.20693 0.99318 0.99076 0.88703 0.82068 1.23638 0.98787 1.01941 1.01401 1.83872 1.19860 1.38302 1.18295 1.25787 1.00326 1.07543 1.05281 1.20142 1.00041 0.98229 0.99280 1.18991 0.96104 1.02305 0.97494 1.20456 0.95724 0.96673 1.01227 0.93802 0.90404 0.91901 0.89258 0.92714 0.91287 0.85837 0.96088 0.99574 0.92703 0.90613 0.82584 0.81725 0.83519 0.92615 0.90594 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.42 -14.59 9.53 -148.98 -1.42 -16.00 16 3 C 0.05 1.25 6.28 71.98 0.45 1.71 16 4 C 0.11 3.31 5.64 86.38 0.49 3.80 16 5 N -0.59 -25.75 2.42 -826.14 -2.00 -27.75 16 6 C 0.28 15.83 4.98 85.63 0.43 16.25 16 7 C -0.53 -32.25 9.39 25.60 0.24 -32.01 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.01 0.31 5.46 84.66 0.46 0.77 16 10 N -0.93 -59.18 13.29 21.45 0.28 -58.90 16 11 Si 0.96 47.04 29.54 68.60 2.03 49.07 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 15 C 0.51 20.75 7.43 87.66 0.65 21.40 16 16 O -0.56 -27.89 10.89 -3.03 -0.03 -27.93 16 17 C -0.18 -4.78 5.29 -11.54 -0.06 -4.84 16 18 H 0.16 2.97 6.44 -2.39 -0.02 2.96 16 19 C -0.13 -2.68 9.75 30.59 0.30 -2.38 16 20 C -0.06 -1.39 5.75 -11.54 -0.07 -1.46 16 21 H 0.16 2.64 6.93 -2.38 -0.02 2.62 16 22 C -0.14 -4.49 4.62 24.59 0.11 -4.38 16 23 S 0.13 4.63 18.88 -56.49 -1.07 3.56 16 24 C -0.25 -8.66 11.23 66.72 0.75 -7.91 16 25 C -0.15 -4.63 9.98 21.22 0.21 -4.42 16 26 C -0.14 -4.24 5.80 -20.92 -0.12 -4.36 16 27 C -0.08 -1.86 9.87 71.24 0.70 -1.16 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 34 H 0.12 2.70 5.99 -2.39 -0.01 2.68 16 35 H 0.02 1.27 7.11 -2.39 -0.02 1.25 16 36 H -0.01 -0.92 7.42 -2.39 -0.02 -0.94 16 37 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 38 H 0.08 1.95 7.27 -2.39 -0.02 1.94 16 39 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 44 H 0.08 1.46 6.75 -2.39 -0.02 1.45 16 Total: -1.00 -83.52 371.68 4.58 -78.94 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.99 Total: 16.01 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 5.79 Total: -17.01 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.71 Total: -86.64 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.45 Total: -43.93 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.07 Total: 3.56 kcal Total: -83.52 4.58 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156673058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.419 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds