Wall clock time and date at job start Tue Mar 31 2020 14:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99837 * 2 1 4 4 C 1.38217 * 119.99841 * 179.97438 * 3 2 1 5 5 C 1.38249 * 119.99738 * 359.80679 * 4 3 2 6 6 C 1.38219 * 120.00446 * 0.42183 * 5 4 3 7 7 C 1.50700 * 120.00108 * 179.80367 * 6 5 4 8 8 S 1.81393 * 109.47684 * 269.73006 * 7 6 5 9 9 O 1.42103 * 110.54458 * 286.82381 * 8 7 6 10 10 O 1.42099 * 110.54267 * 63.57030 * 8 7 6 11 11 N 1.65601 * 104.45145 * 175.19477 * 8 7 6 12 12 C 1.36930 * 120.00090 * 261.76120 * 11 8 7 13 13 H 1.08003 * 120.00028 * 208.75971 * 12 11 8 14 14 C 1.38815 * 120.00181 * 28.75630 * 12 11 8 15 15 N 1.31620 * 119.99443 * 24.94313 * 14 12 11 16 16 Si 1.86799 * 120.00400 * 204.93834 * 14 12 11 17 17 H 1.48503 * 109.46903 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46851 * 120.00293 * 16 14 12 19 19 H 1.48495 * 109.47071 * 240.00167 * 16 14 12 20 20 C 1.46497 * 119.99751 * 81.75973 * 11 8 7 21 21 C 1.54262 * 110.03600 * 235.07160 * 20 11 8 22 22 C 1.54965 * 104.16239 * 217.14086 * 21 20 11 23 23 C 1.54887 * 102.77753 * 37.88415 * 22 21 20 24 24 C 1.53884 * 110.03036 * 117.85200 * 20 11 8 25 25 C 1.38217 * 120.00116 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47080 * 270.02324 * 1 2 3 27 27 H 1.09003 * 109.47459 * 30.02434 * 1 2 3 28 28 H 1.09003 * 109.46876 * 150.02478 * 1 2 3 29 29 H 1.07998 * 120.00023 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.99918 * 180.02562 * 4 3 2 31 31 H 1.08010 * 120.00012 * 180.23590 * 5 4 3 32 32 H 1.09004 * 109.46545 * 149.72779 * 7 6 5 33 33 H 1.09000 * 109.46952 * 29.73834 * 7 6 5 34 34 H 0.97004 * 119.99598 * 184.62758 * 15 14 12 35 35 H 1.08999 * 110.01827 * 356.46826 * 20 11 8 36 36 H 1.09005 * 110.48347 * 335.78635 * 21 20 11 37 37 H 1.08995 * 110.48794 * 98.42565 * 21 20 11 38 38 H 1.09001 * 110.71610 * 279.56888 * 22 21 20 39 39 H 1.08998 * 110.92163 * 156.29255 * 22 21 20 40 40 H 1.09001 * 110.48752 * 203.40240 * 23 22 21 41 41 H 1.09000 * 110.59751 * 80.81828 * 23 22 21 42 42 H 1.08995 * 110.03443 * 238.56856 * 24 20 11 43 43 H 1.08995 * 110.02837 * 0.02562 * 24 20 11 44 44 H 1.07995 * 119.99575 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0051 6 6 3.5806 -1.1970 0.0003 7 6 4.3341 -2.5020 0.0008 8 16 4.6361 -3.0268 -1.7091 9 8 3.4344 -3.4935 -2.3070 10 8 5.4717 -2.0918 -2.3774 11 7 5.5746 -4.3835 -1.5654 12 6 6.9335 -4.2943 -1.7087 13 1 7.4946 -5.1413 -2.0752 14 6 7.5899 -3.1154 -1.3829 15 7 7.0566 -2.2841 -0.5128 16 14 9.2300 -2.7086 -2.1792 17 1 9.6096 -3.7977 -3.1147 18 1 9.1134 -1.4316 -2.9280 19 1 10.2704 -2.5731 -1.1283 20 6 4.9511 -5.6792 -1.2850 21 6 5.5829 -6.3084 -0.0263 22 6 5.6381 -7.8236 -0.3467 23 6 6.0014 -7.8422 -1.8523 24 6 5.2166 -6.6541 -2.4457 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1326 -0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 0.0094 32 1 3.7451 -3.2614 0.5153 33 1 5.2866 -2.3714 0.5145 34 1 7.4808 -1.4301 -0.3351 35 1 3.8780 -5.5535 -1.1411 36 1 6.5871 -5.9156 0.1335 37 1 4.9571 -6.1250 0.8471 38 1 4.6671 -8.2891 -0.1778 39 1 6.4099 -8.3183 0.2430 40 1 5.6811 -8.7780 -2.3105 41 1 7.0731 -7.6984 -1.9900 42 1 4.2723 -7.0021 -2.8644 43 1 5.8097 -6.1632 -3.2172 44 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159565979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:56 Heat of formation + Delta-G solvation = -49.634014 kcal Electronic energy + Delta-G solvation = -26662.643322 eV Core-core repulsion = 23092.723556 eV Total energy + Delta-G solvation = -3569.919766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.05916 -37.91986 -35.88139 -34.54709 -33.86730 -33.21213 -31.65917 -31.10755 -28.03557 -27.15071 -26.78728 -26.35469 -24.11854 -21.81464 -20.46135 -20.09643 -19.43270 -18.87347 -16.96474 -16.15841 -15.98747 -15.31013 -15.16989 -14.95495 -14.73868 -14.24060 -14.16050 -13.93181 -13.57489 -13.01024 -12.83662 -12.69076 -12.68157 -12.26869 -11.95772 -11.84955 -11.72405 -11.56158 -11.31958 -11.05024 -10.83604 -10.72587 -10.69491 -10.56498 -10.53095 -10.46818 -10.41800 -10.22733 -10.06997 -9.95442 -9.92099 -9.61724 -8.91960 -8.43513 -8.14178 -7.62713 -6.34907 -3.82759 1.39854 1.71184 2.00682 3.32859 3.43773 3.46078 4.08455 4.11912 4.47829 4.95645 5.00764 5.06057 5.16134 5.24843 5.26810 5.39265 5.46126 5.48382 5.54944 5.57777 5.67532 5.87943 5.93107 5.94024 5.96329 6.09791 6.13386 6.16459 6.23987 6.27321 6.33811 6.39573 6.45922 6.46659 6.59770 6.72609 6.80532 6.84221 6.88054 6.92268 7.06663 7.11277 7.36177 7.48580 7.72640 8.50206 9.11200 9.51833 10.79598 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.005547 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.971704 B = 5046.778306 C = 6441.940437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.060 4.060 7 C -0.592 4.592 8 S 2.631 3.369 9 O -1.010 7.010 10 O -0.937 6.937 11 N -0.858 5.858 12 C -0.299 4.299 13 H 0.090 0.910 14 C 0.049 3.951 15 N -0.904 5.904 16 Si 0.927 3.073 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.289 1.289 20 C 0.148 3.852 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.122 4.122 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.188 0.812 34 H 0.274 0.726 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -0.542 3.879 7.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.718 4.718 8 S 2.725 3.275 9 O -1.000 7.000 10 O -0.927 6.927 11 N -0.688 5.688 12 C -0.428 4.428 13 H 0.107 0.893 14 C -0.154 4.154 15 N -0.547 5.547 16 Si 0.755 3.245 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.216 1.216 20 C 0.039 3.961 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.141 4.141 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.205 0.795 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.104 -0.028 3.170 7.779 hybrid contribution 0.819 0.196 0.526 0.992 sum -6.285 0.168 3.696 7.293 Atomic orbital electron populations 1.20762 0.91423 1.02667 1.01962 1.19814 0.95849 0.93068 1.00680 1.20968 0.94326 0.97142 1.02306 1.21141 0.94163 0.97999 1.00549 1.21330 1.01217 0.91385 0.97963 1.19274 0.92909 0.93956 1.00020 1.30198 1.11254 1.00875 1.29429 1.04093 0.72352 0.74390 0.76694 1.93449 1.50486 1.81432 1.74660 1.93465 1.65297 1.63132 1.70815 1.53280 1.15334 1.16858 1.83283 1.18785 0.80998 1.01555 1.41489 0.89280 1.24945 0.99340 0.97051 0.94018 1.69354 1.43809 1.11380 1.30177 0.85880 0.80819 0.78853 0.78919 1.19894 1.20515 1.21608 1.21284 0.95334 0.85717 0.93728 1.22754 1.03382 0.93914 0.96940 1.22449 1.00234 0.97101 0.96321 1.22280 1.00434 0.97414 0.95459 1.22453 0.99594 0.95734 0.99073 1.21071 0.93625 0.97909 1.01508 0.91477 0.91748 0.91504 0.86436 0.86080 0.84492 0.87748 0.79514 0.91512 0.91303 0.88874 0.92948 0.92437 0.92337 0.92863 0.91672 0.92633 0.90421 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 2 C -0.09 -1.45 5.88 -104.62 -0.62 -2.07 16 3 C -0.13 -1.90 9.70 -39.58 -0.38 -2.29 16 4 C -0.12 -1.93 10.05 -39.59 -0.40 -2.33 16 5 C -0.10 -1.90 9.70 -39.58 -0.38 -2.29 16 6 C -0.06 -1.19 5.14 -104.63 -0.54 -1.73 16 7 C -0.59 -12.39 5.90 36.01 0.21 -12.18 16 8 S 2.63 63.88 4.54 -107.50 -0.49 63.39 16 9 O -1.01 -25.48 16.95 -57.54 -0.98 -26.45 16 10 O -0.94 -25.77 14.52 -57.54 -0.84 -26.61 16 11 N -0.86 -20.08 2.72 -52.34 -0.14 -20.22 16 12 C -0.30 -7.43 7.35 -15.06 -0.11 -7.54 16 13 H 0.09 2.16 7.53 -52.48 -0.40 1.77 16 14 C 0.05 1.24 3.84 -17.43 -0.07 1.17 16 15 N -0.90 -22.74 8.42 55.49 0.47 -22.27 16 16 Si 0.93 21.29 29.62 -169.99 -5.04 16.25 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.15 2.95 3.16 -66.81 -0.21 2.74 16 21 C -0.13 -2.31 6.41 -25.03 -0.16 -2.47 16 22 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 23 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 24 C -0.13 -2.35 6.17 -25.61 -0.16 -2.51 16 25 C -0.12 -2.18 9.36 -39.59 -0.37 -2.55 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.14 2.68 8.06 -52.48 -0.42 2.26 16 32 H 0.10 1.93 8.09 -51.92 -0.42 1.51 16 33 H 0.19 4.15 5.61 -51.92 -0.29 3.85 16 34 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 35 H 0.07 1.34 7.25 -51.93 -0.38 0.96 16 36 H 0.09 1.85 6.92 -51.93 -0.36 1.49 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.55 7.29 -51.93 -0.38 1.18 16 44 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -29.49 360.90 -11.58 -41.08 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.85 Total: 8.32 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -3.17 Total: -38.93 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.33 Total: -42.49 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.81 Total: -53.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.04 Total: 16.25 kcal Atomic # 16 Polarization: 63.88 SS G_CDS: -0.49 Total: 63.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.49 -11.58 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159565979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.557 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds