Wall clock time and date at job start Tue Mar 31 2020 14:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99918 * 2 1 4 4 C 1.38214 * 119.99796 * 180.27833 * 3 2 1 5 5 C 1.38257 * 119.99922 * 359.74585 * 4 3 2 6 6 C 1.38213 * 120.00242 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99654 * 179.75262 * 2 1 3 8 8 C 1.50699 * 120.00265 * 359.97438 * 7 2 1 9 9 S 1.81395 * 109.47539 * 269.73308 * 8 7 2 10 10 O 1.42100 * 110.54058 * 291.62526 * 9 8 7 11 11 O 1.42097 * 110.54318 * 68.37065 * 9 8 7 12 12 N 1.65602 * 104.45188 * 180.02562 * 9 8 7 13 13 C 1.36935 * 119.99862 * 262.68309 * 12 9 8 14 14 H 1.07997 * 120.00038 * 128.98713 * 13 12 9 15 15 C 1.38815 * 119.99966 * 308.99121 * 13 12 9 16 16 N 1.31621 * 119.99850 * 154.16645 * 15 13 12 17 17 Si 1.86800 * 119.99957 * 334.16400 * 15 13 12 18 18 H 1.48504 * 109.47024 * 95.46443 * 17 15 13 19 19 H 1.48497 * 109.47018 * 215.46514 * 17 15 13 20 20 H 1.48498 * 109.46972 * 335.46671 * 17 15 13 21 21 C 1.46491 * 120.00005 * 82.68335 * 12 9 8 22 22 C 1.54268 * 110.03060 * 240.20064 * 21 12 9 23 23 C 1.54966 * 104.16137 * 217.13335 * 22 21 12 24 24 C 1.54890 * 102.77287 * 37.89185 * 23 22 21 25 25 C 1.53877 * 110.03376 * 122.98435 * 21 12 9 26 26 H 1.08999 * 109.47274 * 270.25032 * 1 2 3 27 27 H 1.09001 * 109.47111 * 30.25230 * 1 2 3 28 28 H 1.09001 * 109.47815 * 150.25334 * 1 2 3 29 29 H 1.07994 * 120.00094 * 0.03982 * 3 2 1 30 30 H 1.08001 * 120.00162 * 179.76721 * 4 3 2 31 31 H 1.07996 * 120.00311 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.00266 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46742 * 149.72961 * 8 7 2 34 34 H 1.09002 * 109.47100 * 29.73667 * 8 7 2 35 35 H 0.97006 * 119.99859 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.02208 * 1.59427 * 21 12 9 37 37 H 1.08998 * 110.48993 * 335.78630 * 22 21 12 38 38 H 1.09004 * 110.48214 * 98.43248 * 22 21 12 39 39 H 1.08997 * 110.72192 * 279.57534 * 23 22 21 40 40 H 1.09001 * 110.92303 * 156.29507 * 23 22 21 41 41 H 1.09001 * 110.48702 * 203.39995 * 24 23 22 42 42 H 1.09000 * 110.60032 * 80.81810 * 24 23 22 43 43 H 1.09001 * 110.03322 * 238.56565 * 25 21 12 44 44 H 1.08996 * 110.03136 * 359.95400 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2716 0.0000 -0.0063 6 6 3.5806 -1.1970 -0.0005 7 6 2.1980 -1.1970 0.0052 8 6 1.4445 -2.5020 0.0114 9 16 1.1496 -3.0220 1.7240 10 8 2.3717 -3.3827 2.3530 11 8 0.2293 -2.1456 2.3598 12 7 0.3248 -4.4513 1.5858 13 6 -1.0411 -4.4656 1.6822 14 1 -1.6311 -4.9548 0.9213 15 6 -1.6675 -3.8512 2.7579 16 7 -2.9013 -3.4094 2.6364 17 14 -0.7592 -3.6516 4.3780 18 1 -0.1409 -2.3026 4.4359 19 1 -1.7151 -3.8068 5.5038 20 1 0.3005 -4.6867 4.4822 21 6 1.0563 -5.7003 1.3605 22 6 0.6087 -6.3423 0.0310 23 6 0.6145 -7.8640 0.3240 24 6 0.0887 -7.9346 1.7791 25 6 0.7262 -6.7124 2.4716 26 1 -0.3634 0.0045 1.0276 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3635 -0.8922 -0.5099 29 1 1.6583 2.1326 0.0006 30 1 4.1204 2.1326 -0.0096 31 1 5.3516 -0.0001 -0.0104 32 1 4.1205 -2.1323 -0.0013 33 1 2.0313 -3.2628 -0.5034 34 1 0.4898 -2.3728 -0.4986 35 1 -3.3389 -2.9797 3.3880 36 1 2.1287 -5.5061 1.3389 37 1 -0.3944 -6.0090 -0.2350 38 1 1.3146 -6.1036 -0.7645 39 1 1.6258 -8.2655 0.2587 40 1 -0.0543 -8.3936 -0.3545 41 1 0.4149 -8.8577 2.2583 42 1 -0.9986 -7.8598 1.7981 43 1 1.6385 -7.0099 2.9887 44 1 0.0224 -6.2739 3.1789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159567968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:59 Heat of formation + Delta-G solvation = -62.397629 kcal Electronic energy + Delta-G solvation = -26978.720709 eV Core-core repulsion = 23408.247472 eV Total energy + Delta-G solvation = -3570.473238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.49228 -39.51712 -37.85370 -36.66383 -35.72288 -34.40026 -33.69003 -33.15897 -29.43811 -28.74087 -28.62101 -27.47687 -25.80793 -23.14916 -21.90062 -21.59452 -20.95282 -20.67788 -19.19670 -17.98185 -17.58423 -17.13787 -16.96935 -16.74498 -16.22797 -16.05251 -15.80080 -15.61600 -15.11414 -14.70189 -14.22986 -14.13982 -14.03865 -14.00513 -13.69888 -13.65591 -13.49458 -13.13742 -13.07401 -12.97817 -12.76285 -12.62642 -12.31981 -12.14558 -11.97959 -11.92384 -11.83219 -11.71694 -11.64731 -11.47908 -11.23806 -11.16054 -10.74677 -9.86322 -9.70558 -9.43233 -8.61968 -6.18041 -0.48705 0.36315 0.42373 1.24016 1.36745 1.48482 2.13028 2.36490 2.73100 2.88312 3.17050 3.44697 3.58996 3.84937 3.86638 3.95423 3.97761 4.09303 4.16798 4.23434 4.36408 4.49952 4.52951 4.62928 4.73137 4.74131 4.78661 4.81110 4.83911 4.90074 4.98450 5.01222 5.06846 5.16400 5.25099 5.28431 5.37687 5.44995 5.48954 5.51309 5.59633 5.61962 5.68534 5.95548 6.02590 6.19653 6.97008 7.20403 8.43354 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.005875 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.022415 B = 4764.492447 C = 5661.144502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.132 4.132 7 C -0.106 4.106 8 C -0.588 4.588 9 S 2.461 3.539 10 O -1.019 7.019 11 O -0.977 6.977 12 N -0.837 5.837 13 C -0.255 4.255 14 H 0.092 0.908 15 C 0.084 3.916 16 N -0.843 5.843 17 Si 0.860 3.140 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.252 1.252 21 C 0.137 3.863 22 C -0.135 4.135 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.135 4.135 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.282 0.718 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 0.030 -8.156 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.108 4.108 8 C -0.712 4.712 9 S 2.569 3.431 10 O -1.009 7.009 11 O -0.966 6.966 12 N -0.662 5.662 13 C -0.401 4.401 14 H 0.110 0.890 15 C -0.130 4.130 16 N -0.479 5.479 17 Si 0.687 3.313 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.176 1.176 21 C 0.031 3.969 22 C -0.174 4.174 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.175 4.175 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.645 0.637 -7.335 12.134 hybrid contribution -0.124 0.374 0.550 0.677 sum 9.521 1.011 -6.785 11.735 Atomic orbital electron populations 1.20976 0.90868 1.03612 1.02804 1.20142 0.96861 0.93301 0.99483 1.21398 0.95250 0.97407 1.00513 1.21600 0.93931 0.99349 0.98609 1.21508 1.01479 0.91713 0.99897 1.21393 0.92973 1.00223 1.00519 1.19293 0.94437 0.92820 1.04223 1.29760 1.08899 1.03412 1.29095 1.12542 0.73457 0.76261 0.80807 1.93341 1.48902 1.82821 1.75879 1.93426 1.62634 1.67162 1.73380 1.53172 1.14055 1.16284 1.82655 1.18541 0.79898 1.35374 1.06262 0.89023 1.25997 0.94737 0.92764 0.99549 1.69836 1.14042 1.31209 1.32826 0.87140 0.81035 0.79886 0.83272 1.19346 1.20592 1.17627 1.21796 0.94509 0.84314 0.96314 1.22798 1.02377 0.96328 0.95857 1.22424 1.01880 0.94713 0.95880 1.22256 1.00040 0.96593 0.96195 1.22511 1.00530 0.96256 0.98156 0.91831 0.88913 0.91767 0.83384 0.82254 0.82733 0.85095 0.84172 0.84549 0.90748 0.90222 0.91169 0.90409 0.90062 0.90235 0.90268 0.92418 0.91693 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.51 71.24 0.68 -3.68 16 2 C -0.10 -3.35 5.88 -19.87 -0.12 -3.47 16 3 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 4 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 5 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 6 C -0.13 -4.26 9.70 22.27 0.22 -4.04 16 7 C -0.11 -3.87 5.14 -19.86 -0.10 -3.97 16 8 C -0.59 -22.10 5.90 71.24 0.42 -21.68 16 9 S 2.46 116.85 4.29 -56.49 -0.24 116.61 16 10 O -1.02 -51.88 16.84 -127.65 -2.15 -54.03 16 11 O -0.98 -53.09 11.43 -127.65 -1.46 -54.55 16 12 N -0.84 -37.86 2.02 -319.52 -0.65 -38.51 16 13 C -0.25 -12.70 8.01 84.03 0.67 -12.03 16 14 H 0.09 4.60 6.98 -2.91 -0.02 4.58 16 15 C 0.08 4.58 4.42 84.86 0.37 4.95 16 16 N -0.84 -46.82 13.97 21.65 0.30 -46.52 16 17 Si 0.86 45.69 24.31 68.60 1.67 47.36 16 18 H -0.27 -15.41 6.07 99.48 0.60 -14.81 16 19 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.25 -13.05 6.23 99.48 0.62 -12.43 16 21 C 0.14 5.17 3.21 45.72 0.15 5.32 16 22 C -0.13 -4.04 6.42 31.70 0.20 -3.84 16 23 C -0.11 -2.71 6.91 31.91 0.22 -2.49 16 24 C -0.11 -3.23 6.83 31.67 0.22 -3.02 16 25 C -0.14 -4.94 6.26 31.32 0.20 -4.74 16 26 H 0.06 2.55 7.63 -2.39 -0.02 2.53 16 27 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 28 H 0.06 2.26 5.94 -2.39 -0.01 2.24 16 29 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.14 4.46 8.09 -2.39 -0.02 4.44 16 34 H 0.14 5.00 5.94 -2.39 -0.01 4.98 16 35 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16 36 H 0.08 2.91 7.11 -2.39 -0.02 2.89 16 37 H 0.07 2.35 6.50 -2.39 -0.02 2.33 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.05 2.28 5.21 -2.39 -0.01 2.27 16 Total: -1.00 -67.57 351.15 2.06 -65.51 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.80 Total: 25.87 kcal Atomic # 6 Polarization: -65.52 SS G_CDS: 3.79 Total: -61.73 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -0.34 Total: -85.03 kcal Atomic # 8 Polarization: -104.97 SS G_CDS: -3.61 Total: -108.58 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Atomic # 16 Polarization: 116.85 SS G_CDS: -0.24 Total: 116.61 kcal Total: -67.57 2.06 -65.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159567968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.112 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds