Wall clock time and date at job start Tue Mar 31 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.01792 * 2 1 4 4 C 1.54271 * 110.03161 * 121.39225 * 2 1 3 5 5 C 1.54885 * 104.19475 * 95.67544 * 4 2 1 6 6 C 1.54889 * 102.75014 * 37.93987 * 5 4 2 7 7 H 1.09004 * 110.48225 * 80.86892 * 6 5 4 8 8 N 1.46499 * 110.48508 * 203.37486 * 6 5 4 9 9 S 1.65604 * 120.00086 * 263.54733 * 8 6 5 10 10 O 1.42097 * 106.40218 * 311.46082 * 9 8 6 11 11 O 1.42098 * 106.39683 * 178.54143 * 9 8 6 12 12 C 1.76199 * 107.21668 * 65.00283 * 9 8 6 13 13 C 1.38636 * 119.74934 * 89.99982 * 12 9 8 14 14 C 1.37614 * 120.25018 * 179.97438 * 13 12 9 15 15 C 1.40719 * 119.74335 * 0.02562 * 14 13 12 16 16 C 1.41398 * 120.24359 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00234 * 336.15835 * 16 15 14 18 18 C 1.39946 * 119.99858 * 156.15593 * 16 15 14 19 19 N 1.30832 * 120.00122 * 341.49816 * 18 16 15 20 20 Si 1.86797 * 120.00107 * 161.49570 * 18 16 15 21 21 H 1.48497 * 109.47010 * 59.99790 * 20 18 16 22 22 H 1.48497 * 109.47062 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47071 * 300.00108 * 20 18 16 24 24 C 1.40717 * 119.51017 * 0.25490 * 15 14 13 25 25 C 1.37616 * 119.74429 * 359.46904 * 24 15 14 26 26 C 1.53873 * 110.03306 * 238.55768 * 2 1 3 27 27 H 1.09000 * 109.46852 * 300.05959 * 1 2 3 28 28 H 1.09000 * 109.47146 * 60.06690 * 1 2 3 29 29 H 1.09001 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47153 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46828 * 299.93831 * 3 2 1 32 32 H 1.09005 * 109.46945 * 59.93549 * 3 2 1 33 33 H 1.08999 * 110.48765 * 336.99394 * 4 2 1 34 34 H 1.09000 * 110.59614 * 214.41218 * 4 2 1 35 35 H 1.09001 * 110.75626 * 279.62169 * 5 4 2 36 36 H 1.09003 * 110.91403 * 156.32997 * 5 4 2 37 37 H 0.97000 * 119.99666 * 83.54937 * 8 6 5 38 38 H 1.08000 * 119.87518 * 0.02562 * 13 12 9 39 39 H 1.07995 * 120.13155 * 179.97438 * 14 13 12 40 40 H 0.96994 * 119.99932 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.12755 * 179.72217 * 24 15 14 42 42 H 1.08001 * 119.87543 * 180.27311 * 25 24 15 43 43 H 1.08997 * 110.03298 * 121.43072 * 26 2 1 44 44 H 1.09001 * 110.03119 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0585 -0.7550 1.2372 5 6 2.3281 -2.1898 0.7201 6 6 2.8874 -1.9409 -0.7027 7 1 3.9446 -1.6792 -0.6565 8 7 2.6895 -3.1228 -1.5454 9 16 3.9158 -4.2195 -1.7349 10 8 5.0801 -3.4688 -2.0513 11 8 3.4060 -5.2512 -2.5685 12 6 4.2088 -4.9518 -0.1593 13 6 3.5170 -6.0961 0.2067 14 6 3.7381 -6.6769 1.4346 15 6 4.6701 -6.1045 2.3199 16 6 4.9052 -6.6922 3.5843 17 1 4.1484 -7.3133 4.0403 18 6 6.1185 -6.4690 4.2450 19 7 7.1579 -6.0393 3.5766 20 14 6.2541 -6.7844 6.0811 21 1 5.9495 -8.2103 6.3622 22 1 7.6328 -6.4730 6.5364 23 1 5.2873 -5.9198 6.8046 24 6 5.3621 -4.9396 1.9401 25 6 5.1291 -4.3792 0.7050 26 6 2.0571 -0.7541 -1.2334 27 1 -0.3633 0.5148 0.8895 28 1 -0.3633 0.5128 -0.8906 29 1 -0.3633 -1.0277 0.0005 30 1 3.1436 1.4272 0.0005 31 1 1.6962 1.9545 -0.8906 32 1 1.6944 1.9552 0.8895 33 1 1.3062 -0.7687 2.0259 34 1 2.9806 -0.3002 1.5990 35 1 1.4031 -2.7649 0.6764 36 1 3.0664 -2.6954 1.3425 37 1 1.8401 -3.2630 -1.9924 38 1 2.8025 -6.5338 -0.4746 39 1 3.1978 -7.5680 1.7179 40 1 7.9988 -5.8843 4.0346 41 1 6.0762 -4.4894 2.6136 42 1 5.6622 -3.4877 0.4095 43 1 2.6867 -0.0962 -1.8324 44 1 1.2229 -1.1205 -1.8317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162692547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:29 Heat of formation + Delta-G solvation = -90.119619 kcal Electronic energy + Delta-G solvation = -25833.863615 eV Core-core repulsion = 22262.188262 eV Total energy + Delta-G solvation = -3571.675354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.23182 -37.56375 -36.44855 -35.09692 -34.45561 -34.02711 -30.60129 -30.22391 -29.45388 -27.99949 -27.39400 -25.80797 -24.03333 -21.49934 -21.14441 -20.67467 -19.09236 -18.65941 -17.61408 -17.17362 -16.52794 -15.89259 -15.50618 -15.04608 -14.58916 -14.21104 -14.04362 -13.73876 -13.45193 -13.36270 -13.20418 -12.95031 -12.45269 -12.24671 -12.22218 -12.14342 -11.75572 -11.72103 -11.57882 -11.44130 -11.36105 -11.29895 -11.22724 -10.96089 -10.87510 -10.79829 -10.56038 -10.45670 -10.43844 -10.33603 -9.74587 -9.61108 -9.46441 -8.96874 -7.94495 -7.68939 -7.13906 -4.79279 1.29671 2.27707 2.87654 2.89445 2.93003 2.94458 3.65872 3.75210 4.24533 4.49008 4.54256 4.64744 4.73174 5.15243 5.21433 5.31305 5.38230 5.39520 5.43504 5.49185 5.58542 5.65858 5.68549 5.78111 5.89154 5.94273 5.97642 6.05530 6.09691 6.13038 6.18638 6.23106 6.42649 6.49425 6.59624 6.68871 6.72265 6.92533 7.06231 7.33061 7.37634 7.44207 7.64815 7.77462 7.97923 8.32440 8.52149 8.66038 9.77631 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004149 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.092892 B = 6747.108383 C = 8081.262158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.142 4.142 6 C 0.151 3.849 7 H 0.095 0.905 8 N -1.119 6.119 9 S 2.691 3.309 10 O -0.985 6.985 11 O -0.988 6.988 12 C -0.784 4.784 13 C 0.004 3.996 14 C -0.240 4.240 15 C 0.141 3.859 16 C -0.437 4.437 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.764 5.764 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.183 4.183 25 C -0.014 4.014 26 C -0.118 4.118 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.408 0.592 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.290 0.710 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 10.893 -1.765 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.181 4.181 6 C 0.043 3.957 7 H 0.113 0.887 8 N -0.874 5.874 9 S 2.790 3.210 10 O -0.976 6.976 11 O -0.979 6.979 12 C -0.880 4.880 13 C -0.016 4.016 14 C -0.260 4.260 15 C 0.137 3.863 16 C -0.464 4.464 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.386 5.386 20 Si 0.739 3.261 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.204 4.204 25 C -0.034 4.034 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.924 10.830 -2.522 13.654 hybrid contribution -0.286 -0.421 1.374 1.466 sum -8.210 10.409 -1.148 13.306 Atomic orbital electron populations 1.21904 0.94441 1.01796 1.01293 1.21153 0.95481 0.95154 0.95260 1.21930 1.01088 0.95314 1.01367 1.22452 1.00977 0.95326 0.96507 1.23037 1.02292 0.96604 0.96214 1.21563 1.00298 0.84363 0.89457 0.88690 1.55807 1.31527 1.37069 1.62958 1.01244 0.72484 0.72346 0.74921 1.93483 1.47736 1.72161 1.84190 1.93485 1.80458 1.56718 1.67255 1.29100 1.19389 1.14941 1.24556 1.20134 0.94283 0.92043 0.95156 1.21002 1.07174 1.02484 0.95356 1.17825 0.88126 0.89166 0.91154 1.19906 1.00207 1.24961 1.01375 0.89542 1.26129 0.94973 0.92502 1.01308 1.69822 1.01333 1.29128 1.38346 0.86216 0.78575 0.80318 0.80955 1.18574 1.19899 1.18374 1.21312 1.04663 0.97676 0.96714 1.20218 0.93156 0.96759 0.93307 1.22556 0.99594 0.96424 0.97165 0.92830 0.92957 0.92440 0.92371 0.92909 0.92786 0.91518 0.91278 0.90887 0.89907 0.75904 0.87947 0.88329 0.89894 0.86120 0.88061 0.91137 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.14 37.16 0.30 -0.90 16 2 C -0.07 -0.68 0.94 -153.39 -0.14 -0.83 16 3 C -0.14 -1.22 8.16 37.16 0.30 -0.92 16 4 C -0.11 -1.27 5.90 -25.07 -0.15 -1.42 16 5 C -0.14 -1.91 6.58 -24.74 -0.16 -2.07 16 6 C 0.15 2.04 3.52 -66.27 -0.23 1.81 16 7 H 0.10 1.39 7.58 -51.93 -0.39 0.99 16 8 N -1.12 -16.36 5.59 -3.48 -0.02 -16.38 16 9 S 2.69 51.84 5.72 -107.50 -0.62 51.23 16 10 O -0.99 -21.31 16.63 -57.17 -0.95 -22.26 16 11 O -0.99 -21.12 17.26 -57.17 -0.99 -22.11 16 12 C -0.78 -16.93 5.97 -39.29 -0.23 -17.16 16 13 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 14 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 15 C 0.14 3.51 5.58 -106.82 -0.60 2.92 16 16 C -0.44 -10.62 9.05 -37.74 -0.34 -10.96 16 17 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.68 5.13 -17.34 -0.09 1.59 16 19 N -0.76 -18.20 10.98 55.55 0.61 -17.59 16 20 Si 0.92 16.88 29.60 -169.99 -5.03 11.85 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 C -0.18 -4.48 8.70 -38.87 -0.34 -4.82 16 25 C -0.01 -0.32 8.78 -39.66 -0.35 -0.67 16 26 C -0.12 -1.28 5.84 -25.62 -0.15 -1.43 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 34 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.41 4.96 8.59 -34.48 -0.30 4.66 16 38 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.29 6.21 8.30 -40.82 -0.34 5.88 16 41 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 42 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 43 H 0.07 0.73 7.67 -51.93 -0.40 0.34 16 44 H 0.07 0.71 7.31 -51.93 -0.38 0.33 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -29.11 365.55 -11.14 -40.25 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.72 Total: 10.63 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: -2.94 Total: -41.12 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.59 Total: -33.97 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.94 Total: -44.37 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 51.84 SS G_CDS: -0.62 Total: 51.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.11 -11.14 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162692547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.865 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds