Wall clock time and date at job start Tue Mar 31 2020 14:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.01792 * 2 1 4 4 C 1.54271 * 110.03161 * 121.39225 * 2 1 3 5 5 C 1.54885 * 104.19475 * 95.67544 * 4 2 1 6 6 C 1.54889 * 102.75014 * 37.93987 * 5 4 2 7 7 H 1.09004 * 110.48225 * 80.86892 * 6 5 4 8 8 N 1.46499 * 110.48508 * 203.37486 * 6 5 4 9 9 S 1.65604 * 120.00086 * 263.54733 * 8 6 5 10 10 O 1.42097 * 106.40218 * 311.46082 * 9 8 6 11 11 O 1.42098 * 106.39683 * 178.54143 * 9 8 6 12 12 C 1.76199 * 107.21668 * 65.00283 * 9 8 6 13 13 C 1.38636 * 119.74934 * 89.99982 * 12 9 8 14 14 C 1.37614 * 120.25018 * 179.97438 * 13 12 9 15 15 C 1.40719 * 119.74335 * 0.02562 * 14 13 12 16 16 C 1.41398 * 120.24359 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00234 * 336.15835 * 16 15 14 18 18 C 1.39946 * 119.99858 * 156.15593 * 16 15 14 19 19 N 1.30832 * 120.00122 * 341.49816 * 18 16 15 20 20 Si 1.86797 * 120.00107 * 161.49570 * 18 16 15 21 21 H 1.48497 * 109.47010 * 59.99790 * 20 18 16 22 22 H 1.48497 * 109.47062 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47071 * 300.00108 * 20 18 16 24 24 C 1.40717 * 119.51017 * 0.25490 * 15 14 13 25 25 C 1.37616 * 119.74429 * 359.46904 * 24 15 14 26 26 C 1.53873 * 110.03306 * 238.55768 * 2 1 3 27 27 H 1.09000 * 109.46852 * 300.05959 * 1 2 3 28 28 H 1.09000 * 109.47146 * 60.06690 * 1 2 3 29 29 H 1.09001 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47153 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46828 * 299.93831 * 3 2 1 32 32 H 1.09005 * 109.46945 * 59.93549 * 3 2 1 33 33 H 1.08999 * 110.48765 * 336.99394 * 4 2 1 34 34 H 1.09000 * 110.59614 * 214.41218 * 4 2 1 35 35 H 1.09001 * 110.75626 * 279.62169 * 5 4 2 36 36 H 1.09003 * 110.91403 * 156.32997 * 5 4 2 37 37 H 0.97000 * 119.99666 * 83.54937 * 8 6 5 38 38 H 1.08000 * 119.87518 * 0.02562 * 13 12 9 39 39 H 1.07995 * 120.13155 * 179.97438 * 14 13 12 40 40 H 0.96994 * 119.99932 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.12755 * 179.72217 * 24 15 14 42 42 H 1.08001 * 119.87543 * 180.27311 * 25 24 15 43 43 H 1.08997 * 110.03298 * 121.43072 * 26 2 1 44 44 H 1.09001 * 110.03119 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0585 -0.7550 1.2372 5 6 2.3281 -2.1898 0.7201 6 6 2.8874 -1.9409 -0.7027 7 1 3.9446 -1.6792 -0.6565 8 7 2.6895 -3.1228 -1.5454 9 16 3.9158 -4.2195 -1.7349 10 8 5.0801 -3.4688 -2.0513 11 8 3.4060 -5.2512 -2.5685 12 6 4.2088 -4.9518 -0.1593 13 6 3.5170 -6.0961 0.2067 14 6 3.7381 -6.6769 1.4346 15 6 4.6701 -6.1045 2.3199 16 6 4.9052 -6.6922 3.5843 17 1 4.1484 -7.3133 4.0403 18 6 6.1185 -6.4690 4.2450 19 7 7.1579 -6.0393 3.5766 20 14 6.2541 -6.7844 6.0811 21 1 5.9495 -8.2103 6.3622 22 1 7.6328 -6.4730 6.5364 23 1 5.2873 -5.9198 6.8046 24 6 5.3621 -4.9396 1.9401 25 6 5.1291 -4.3792 0.7050 26 6 2.0571 -0.7541 -1.2334 27 1 -0.3633 0.5148 0.8895 28 1 -0.3633 0.5128 -0.8906 29 1 -0.3633 -1.0277 0.0005 30 1 3.1436 1.4272 0.0005 31 1 1.6962 1.9545 -0.8906 32 1 1.6944 1.9552 0.8895 33 1 1.3062 -0.7687 2.0259 34 1 2.9806 -0.3002 1.5990 35 1 1.4031 -2.7649 0.6764 36 1 3.0664 -2.6954 1.3425 37 1 1.8401 -3.2630 -1.9924 38 1 2.8025 -6.5338 -0.4746 39 1 3.1978 -7.5680 1.7179 40 1 7.9988 -5.8843 4.0346 41 1 6.0762 -4.4894 2.6136 42 1 5.6622 -3.4877 0.4095 43 1 2.6867 -0.0962 -1.8324 44 1 1.2229 -1.1205 -1.8317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162692547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:28 Heat of formation + Delta-G solvation = -107.006743 kcal Electronic energy + Delta-G solvation = -25834.595896 eV Core-core repulsion = 22262.188262 eV Total energy + Delta-G solvation = -3572.407634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17397 -39.35883 -38.12510 -36.78752 -35.81040 -35.53929 -32.08014 -31.56636 -31.26630 -28.96509 -28.06653 -27.60457 -24.97151 -23.28126 -22.94163 -21.78209 -20.51706 -19.56836 -19.40984 -18.73079 -18.13331 -17.21008 -17.16818 -16.11770 -15.99124 -15.82288 -15.21266 -15.06083 -14.89256 -14.51881 -14.35049 -14.11216 -13.98736 -13.79846 -13.53104 -13.34219 -13.19473 -13.08411 -13.03143 -12.94246 -12.87598 -12.75726 -12.54660 -12.32155 -12.04939 -12.01833 -11.75296 -11.52879 -11.39765 -11.34540 -11.27904 -11.25457 -11.16582 -10.27015 -9.76059 -9.52348 -8.86700 -6.63681 -0.28519 0.51158 1.07889 1.35652 1.44322 1.50082 2.11327 2.26087 2.54638 2.94674 3.51580 3.55460 3.67215 3.72166 3.90679 4.26506 4.32015 4.34250 4.38583 4.47595 4.55283 4.59943 4.67963 4.72000 4.87970 4.91545 4.95570 5.02763 5.03722 5.09543 5.12158 5.20926 5.25641 5.26247 5.30396 5.45945 5.50538 5.52621 5.53720 5.61495 5.64272 5.78575 5.94317 6.16917 6.25462 6.50370 6.69777 6.82796 8.08373 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004149 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.092892 B = 6747.108383 C = 8081.262158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.112 4.112 5 C -0.143 4.143 6 C 0.143 3.857 7 H 0.082 0.918 8 N -1.100 6.100 9 S 2.721 3.279 10 O -1.007 7.007 11 O -1.005 7.005 12 C -0.790 4.790 13 C 0.000 4.000 14 C -0.257 4.257 15 C 0.114 3.886 16 C -0.469 4.469 17 H 0.091 0.909 18 C 0.036 3.964 19 N -0.798 5.798 20 Si 0.990 3.010 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.256 1.256 24 C -0.205 4.205 25 C -0.014 4.014 26 C -0.114 4.114 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.424 0.576 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.298 0.702 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 12.086 -1.788 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.150 4.150 5 C -0.182 4.182 6 C 0.036 3.964 7 H 0.100 0.900 8 N -0.860 5.860 9 S 2.817 3.183 10 O -0.997 6.997 11 O -0.996 6.996 12 C -0.883 4.883 13 C -0.020 4.020 14 C -0.277 4.277 15 C 0.111 3.889 16 C -0.495 4.495 17 H 0.109 0.891 18 C -0.183 4.183 19 N -0.421 5.421 20 Si 0.809 3.191 21 H -0.180 1.180 22 H -0.189 1.189 23 H -0.180 1.180 24 C -0.225 4.225 25 C -0.034 4.034 26 C -0.153 4.153 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.260 0.740 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.334 12.002 -2.541 15.416 hybrid contribution 0.113 -0.733 1.268 1.469 sum -9.222 11.269 -1.274 14.617 Atomic orbital electron populations 1.21893 0.93283 1.01851 1.02243 1.21131 0.96341 0.95418 0.93716 1.21922 1.00770 0.94608 1.02318 1.22454 1.01266 0.93824 0.97495 1.22987 1.01420 0.98017 0.95814 1.21751 1.00348 0.84787 0.89530 0.89989 1.55347 1.31311 1.36236 1.63118 1.00348 0.72529 0.72051 0.73410 1.93457 1.49630 1.72498 1.84103 1.93456 1.80748 1.58050 1.67345 1.29540 1.18536 1.14949 1.25316 1.20405 0.94473 0.92033 0.95059 1.21222 1.07459 1.03139 0.95897 1.18159 0.88951 0.89702 0.92101 1.20205 1.01288 1.26092 1.01951 0.89066 1.27003 0.93962 0.91625 1.05742 1.69863 1.02074 1.29780 1.40382 0.85116 0.78878 0.80292 0.74776 1.17971 1.18931 1.17958 1.21305 1.05365 0.98295 0.97544 1.20351 0.93205 0.96892 0.92956 1.22571 0.99701 0.95180 0.97840 0.92181 0.91785 0.92836 0.92921 0.91772 0.92071 0.90766 0.91541 0.90626 0.92908 0.73964 0.85919 0.87296 0.89070 0.87320 0.87161 0.90382 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.14 71.98 0.59 -1.39 16 2 C -0.07 -1.13 0.94 -51.45 -0.05 -1.17 16 3 C -0.14 -2.08 8.16 71.98 0.59 -1.49 16 4 C -0.11 -2.36 5.90 31.67 0.19 -2.17 16 5 C -0.14 -3.78 6.58 31.88 0.21 -3.57 16 6 C 0.14 3.71 3.52 46.06 0.16 3.87 16 7 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 8 N -1.10 -30.56 5.59 -164.93 -0.92 -31.48 16 9 S 2.72 102.79 5.72 -56.49 -0.32 102.47 16 10 O -1.01 -43.02 16.63 -128.00 -2.13 -45.15 16 11 O -1.01 -41.70 17.26 -128.00 -2.21 -43.91 16 12 C -0.79 -34.37 5.97 22.46 0.13 -34.24 16 13 C 0.00 0.00 9.49 22.22 0.21 0.22 16 14 C -0.26 -12.26 9.80 22.73 0.22 -12.04 16 15 C 0.11 5.90 5.58 -21.29 -0.12 5.78 16 16 C -0.47 -23.38 9.05 23.46 0.21 -23.17 16 17 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 18 C 0.04 1.68 5.13 85.26 0.44 2.11 16 19 N -0.80 -38.99 10.98 21.83 0.24 -38.75 16 20 Si 0.99 34.52 29.60 68.60 2.03 36.55 16 21 H -0.26 -8.62 7.11 99.48 0.71 -7.92 16 22 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 23 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 24 C -0.20 -10.42 8.70 22.73 0.20 -10.23 16 25 C -0.01 -0.65 8.78 22.22 0.20 -0.46 16 26 C -0.11 -2.18 5.84 31.32 0.18 -2.00 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.07 1.44 7.84 -2.39 -0.02 1.43 16 34 H 0.07 1.42 7.86 -2.39 -0.02 1.40 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.71 7.42 -2.39 -0.02 1.69 16 37 H 0.42 9.30 8.59 -96.74 -0.83 8.47 16 38 H 0.12 4.85 7.60 -2.91 -0.02 4.82 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 41 H 0.11 5.68 6.16 -2.91 -0.02 5.67 16 42 H 0.11 4.79 7.60 -2.91 -0.02 4.77 16 43 H 0.08 1.41 7.67 -2.39 -0.02 1.40 16 44 H 0.09 1.42 7.31 -2.39 -0.02 1.40 16 Total: -1.00 -62.96 365.55 0.21 -62.75 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.17 Total: 37.48 kcal Atomic # 6 Polarization: -83.31 SS G_CDS: 3.36 Total: -79.95 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.68 Total: -70.23 kcal Atomic # 8 Polarization: -84.72 SS G_CDS: -4.34 Total: -89.06 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Atomic # 16 Polarization: 102.79 SS G_CDS: -0.32 Total: 102.47 kcal Total: -62.96 0.21 -62.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162692547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.260 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds