Wall clock time and date at job start Tue Mar 31 2020 13:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37951 * 119.70650 * 2 1 4 4 C 1.38221 * 119.82598 * 180.02562 * 3 2 1 5 5 C 1.38003 * 119.71952 * 0.26563 * 4 3 2 6 6 C 1.38794 * 120.50205 * 359.93131 * 5 4 3 7 7 C 1.37711 * 119.84475 * 359.57570 * 6 5 4 8 8 C 1.50598 * 122.85167 * 181.44540 * 7 6 5 9 9 C 1.53272 * 110.82685 * 339.69945 * 8 7 6 10 10 N 1.47231 * 107.66906 * 47.63568 * 9 8 7 11 11 S 1.65603 * 121.33064 * 115.80960 * 10 9 8 12 12 O 1.42102 * 104.27650 * 153.64869 * 11 10 9 13 13 O 1.42098 * 104.27898 * 25.78929 * 11 10 9 14 14 C 1.81408 * 104.44779 * 269.71635 * 11 10 9 15 15 C 1.53000 * 109.46799 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.46680 * 117.33453 * 295.54186 * 10 9 8 26 26 H 1.08999 * 109.47115 * 90.00441 * 1 2 3 27 27 H 1.08999 * 109.46466 * 209.99727 * 1 2 3 28 28 H 1.08995 * 109.47463 * 329.99679 * 1 2 3 29 29 H 1.07995 * 120.08847 * 0.05842 * 3 2 1 30 30 H 1.08007 * 120.14196 * 180.29366 * 4 3 2 31 31 H 1.08003 * 119.74676 * 179.90629 * 5 4 3 32 32 H 1.09005 * 109.20182 * 100.16369 * 8 7 6 33 33 H 1.09002 * 109.20677 * 219.50439 * 8 7 6 34 34 H 1.08997 * 109.88815 * 288.11356 * 9 8 7 35 35 H 1.09005 * 109.91067 * 167.17120 * 9 8 7 36 36 H 1.09001 * 109.46823 * 60.00309 * 14 11 10 37 37 H 1.08992 * 109.47429 * 300.00345 * 14 11 10 38 38 H 1.09002 * 109.47398 * 300.00340 * 15 14 11 39 39 H 1.09001 * 109.47194 * 60.00520 * 15 14 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 41 41 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 42 42 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.43930 * 164.73458 * 25 10 9 44 44 H 1.09003 * 109.43282 * 284.65179 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.1982 0.0000 4 6 3.5729 1.2011 -0.0005 5 6 4.2595 0.0040 -0.0066 6 6 3.5727 -1.2021 -0.0108 7 6 2.1956 -1.2066 0.0000 8 6 1.3831 -2.4742 0.0283 9 6 2.2163 -3.6666 -0.4547 10 7 3.5108 -3.6198 0.2452 11 16 3.9660 -4.8172 1.2947 12 8 5.3864 -4.7869 1.2663 13 8 3.2486 -5.9616 0.8532 14 6 3.3496 -4.2630 2.9084 15 6 3.7126 -5.2975 3.9756 16 6 3.1923 -4.8305 5.3365 17 6 3.5504 -5.8491 6.3878 18 1 4.0950 -6.7403 6.1129 19 6 3.1836 -5.6429 7.7008 20 7 3.4965 -6.5316 8.6183 21 14 2.2435 -4.1004 8.1767 22 1 0.7847 -4.3569 8.0693 23 1 2.5790 -3.7277 9.5744 24 1 2.6192 -2.9905 7.2645 25 6 4.3837 -2.4734 -0.0290 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6473 2.1315 0.0010 30 1 4.1133 2.1362 0.0042 31 1 5.3395 0.0058 -0.0086 32 1 1.0446 -2.6604 1.0476 33 1 0.5158 -2.3588 -0.6219 34 1 2.3761 -3.5957 -1.5305 35 1 1.7027 -4.5985 -0.2182 36 1 2.2663 -4.1506 2.8644 37 1 3.8043 -3.3054 3.1617 38 1 3.2583 -6.2555 3.7225 39 1 4.7960 -5.4096 4.0194 40 1 3.6464 -3.8725 5.5898 41 1 2.1090 -4.7187 5.2925 42 1 3.2382 -6.3866 9.5419 43 1 5.1610 -2.4188 0.7332 44 1 4.8448 -2.5949 -1.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171965644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:10 Heat of formation + Delta-G solvation = -62.268034 kcal Electronic energy + Delta-G solvation = -25410.312179 eV Core-core repulsion = 21839.844561 eV Total energy + Delta-G solvation = -3570.467618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38986 -37.08532 -36.91118 -35.83658 -34.81799 -34.09024 -32.21985 -31.55474 -30.44408 -28.38606 -27.05299 -25.42751 -24.11674 -23.51233 -21.21830 -20.73895 -20.19147 -18.69717 -17.67174 -16.94968 -16.79672 -16.17341 -16.12244 -15.64339 -15.32012 -14.68924 -14.64945 -14.23177 -14.21452 -13.94249 -13.70733 -13.20907 -12.95522 -12.87038 -12.72301 -12.55946 -12.38370 -12.33218 -12.15037 -11.95619 -11.87584 -11.76382 -11.60543 -11.60078 -11.17370 -10.99285 -10.95574 -10.88420 -10.10388 -9.88663 -9.75691 -9.30126 -9.16566 -8.81167 -8.75427 -8.59299 -6.09035 -4.08293 0.31724 1.08394 1.11282 2.60347 3.25913 3.33717 3.36076 3.43639 3.90307 4.13984 4.27905 4.39840 4.44372 4.58719 4.64733 4.71954 4.80738 4.99829 5.02502 5.03429 5.08790 5.17295 5.24613 5.24976 5.30804 5.35086 5.35646 5.43072 5.53481 5.64064 5.75964 5.76311 5.88521 5.90460 6.10474 6.20490 6.26053 6.26970 6.34091 6.45032 6.66134 6.76033 7.12066 7.26028 7.70485 8.47060 8.95376 9.52193 11.04280 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003741 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.882767 B = 7483.281012 C = 8662.108098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.066 4.066 8 C -0.104 4.104 9 C 0.120 3.880 10 N -1.006 6.006 11 S 2.602 3.398 12 O -0.956 6.956 13 O -0.955 6.955 14 C -0.614 4.614 15 C -0.097 4.097 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.166 3.834 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.099 0.901 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 16.063 -22.227 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.067 4.067 8 C -0.142 4.142 9 C -0.005 4.005 10 N -0.841 5.841 11 S 2.699 3.301 12 O -0.946 6.946 13 O -0.945 6.945 14 C -0.746 4.746 15 C -0.137 4.137 16 C -0.042 4.042 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 C 0.041 3.959 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.026 15.209 -22.305 27.295 hybrid contribution -0.833 1.519 0.854 1.931 sum -4.858 16.728 -21.451 27.633 Atomic orbital electron populations 1.20868 0.91261 1.03093 1.02295 1.19938 0.96062 0.92597 1.00119 1.20952 0.94394 0.97344 1.01239 1.21036 0.94319 0.97896 1.00307 1.21050 1.00049 0.91724 1.01056 1.19846 0.93418 0.94964 1.00884 1.19281 0.92667 0.94309 1.00398 1.21036 0.97987 0.92228 1.02942 1.21541 0.82609 0.98893 0.97482 1.57982 1.27608 1.39151 1.59385 1.05378 0.74699 0.73644 0.76350 1.93574 1.28393 1.86022 1.86623 1.93567 1.74656 1.46577 1.79734 1.30650 1.12615 1.11327 1.19985 1.21317 1.01913 0.95457 0.94975 1.19522 0.95968 0.97365 0.91393 1.21135 1.37141 1.06684 0.91542 0.90711 1.25016 0.95502 0.96358 0.96461 1.69909 1.46911 1.35200 1.01857 0.86790 0.80526 0.84215 0.77829 1.20204 1.21234 1.19069 1.20163 0.91040 0.81719 1.03009 0.91119 0.91087 0.91562 0.86190 0.85972 0.85754 0.89854 0.89387 0.90377 0.87999 0.85508 0.85481 0.91005 0.90992 0.96209 0.96638 0.92615 0.88271 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.13 36.01 0.33 -0.47 16 2 C -0.09 -0.78 5.89 -104.47 -0.61 -1.40 16 3 C -0.12 -1.04 9.68 -39.69 -0.38 -1.42 16 4 C -0.12 -1.00 10.05 -39.67 -0.40 -1.40 16 5 C -0.12 -1.08 9.62 -39.46 -0.38 -1.46 16 6 C -0.09 -0.89 5.82 -104.56 -0.61 -1.50 16 7 C -0.07 -0.64 5.76 -104.61 -0.60 -1.25 16 8 C -0.10 -0.86 4.72 -27.79 -0.13 -0.99 16 9 C 0.12 1.10 6.45 -3.50 -0.02 1.08 16 10 N -1.01 -11.27 3.18 -114.76 -0.37 -11.63 16 11 S 2.60 37.65 5.45 -107.50 -0.59 37.06 16 12 O -0.96 -16.33 16.93 -57.54 -0.97 -17.31 16 13 O -0.95 -16.09 16.68 -57.54 -0.96 -17.05 16 14 C -0.61 -9.08 6.18 37.16 0.23 -8.85 16 15 C -0.10 -1.91 5.16 -26.73 -0.14 -2.04 16 16 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 17 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 18 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 21 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 C 0.17 1.67 6.02 -5.04 -0.03 1.64 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 6.65 -51.93 -0.35 0.11 16 28 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 31 H 0.12 0.90 8.05 -52.48 -0.42 0.47 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.56 7.00 -51.93 -0.36 0.19 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.93 6.98 -51.93 -0.36 0.57 16 36 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.10 0.98 7.40 -51.93 -0.38 0.60 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -35.46 364.53 -11.46 -46.92 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.88 Total: -1.59 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -3.30 Total: -31.76 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.41 Total: -38.62 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.93 Total: -34.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.59 Total: 37.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.46 -11.46 -46.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171965644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.343 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds