Wall clock time and date at job start Tue Mar 31 2020 13:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37951 * 119.70650 * 2 1 4 4 C 1.38221 * 119.82598 * 180.02562 * 3 2 1 5 5 C 1.38003 * 119.71952 * 0.26563 * 4 3 2 6 6 C 1.38794 * 120.50205 * 359.93131 * 5 4 3 7 7 C 1.37711 * 119.84475 * 359.57570 * 6 5 4 8 8 C 1.50598 * 122.85167 * 181.44540 * 7 6 5 9 9 C 1.53272 * 110.82685 * 339.69945 * 8 7 6 10 10 N 1.47231 * 107.66906 * 47.63568 * 9 8 7 11 11 S 1.65603 * 121.33064 * 115.80960 * 10 9 8 12 12 O 1.42102 * 104.27650 * 153.64869 * 11 10 9 13 13 O 1.42098 * 104.27898 * 25.78929 * 11 10 9 14 14 C 1.81408 * 104.44779 * 269.71635 * 11 10 9 15 15 C 1.53000 * 109.46799 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.46680 * 117.33453 * 295.54186 * 10 9 8 26 26 H 1.08999 * 109.47115 * 90.00441 * 1 2 3 27 27 H 1.08999 * 109.46466 * 209.99727 * 1 2 3 28 28 H 1.08995 * 109.47463 * 329.99679 * 1 2 3 29 29 H 1.07995 * 120.08847 * 0.05842 * 3 2 1 30 30 H 1.08007 * 120.14196 * 180.29366 * 4 3 2 31 31 H 1.08003 * 119.74676 * 179.90629 * 5 4 3 32 32 H 1.09005 * 109.20182 * 100.16369 * 8 7 6 33 33 H 1.09002 * 109.20677 * 219.50439 * 8 7 6 34 34 H 1.08997 * 109.88815 * 288.11356 * 9 8 7 35 35 H 1.09005 * 109.91067 * 167.17120 * 9 8 7 36 36 H 1.09001 * 109.46823 * 60.00309 * 14 11 10 37 37 H 1.08992 * 109.47429 * 300.00345 * 14 11 10 38 38 H 1.09002 * 109.47398 * 300.00340 * 15 14 11 39 39 H 1.09001 * 109.47194 * 60.00520 * 15 14 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 41 41 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 42 42 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.43930 * 164.73458 * 25 10 9 44 44 H 1.09003 * 109.43282 * 284.65179 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.1982 0.0000 4 6 3.5729 1.2011 -0.0005 5 6 4.2595 0.0040 -0.0066 6 6 3.5727 -1.2021 -0.0108 7 6 2.1956 -1.2066 0.0000 8 6 1.3831 -2.4742 0.0283 9 6 2.2163 -3.6666 -0.4547 10 7 3.5108 -3.6198 0.2452 11 16 3.9660 -4.8172 1.2947 12 8 5.3864 -4.7869 1.2663 13 8 3.2486 -5.9616 0.8532 14 6 3.3496 -4.2630 2.9084 15 6 3.7126 -5.2975 3.9756 16 6 3.1923 -4.8305 5.3365 17 6 3.5504 -5.8491 6.3878 18 1 4.0950 -6.7403 6.1129 19 6 3.1836 -5.6429 7.7008 20 7 3.4965 -6.5316 8.6183 21 14 2.2435 -4.1004 8.1767 22 1 0.7847 -4.3569 8.0693 23 1 2.5790 -3.7277 9.5744 24 1 2.6192 -2.9905 7.2645 25 6 4.3837 -2.4734 -0.0290 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6473 2.1315 0.0010 30 1 4.1133 2.1362 0.0042 31 1 5.3395 0.0058 -0.0086 32 1 1.0446 -2.6604 1.0476 33 1 0.5158 -2.3588 -0.6219 34 1 2.3761 -3.5957 -1.5305 35 1 1.7027 -4.5985 -0.2182 36 1 2.2663 -4.1506 2.8644 37 1 3.8043 -3.3054 3.1617 38 1 3.2583 -6.2555 3.7225 39 1 4.7960 -5.4096 4.0194 40 1 3.6464 -3.8725 5.5898 41 1 2.1090 -4.7187 5.2925 42 1 3.2382 -6.3866 9.5419 43 1 5.1610 -2.4188 0.7332 44 1 4.8448 -2.5949 -1.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171965644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:09 Heat of formation + Delta-G solvation = -84.926521 kcal Electronic energy + Delta-G solvation = -25411.294725 eV Core-core repulsion = 21839.844561 eV Total energy + Delta-G solvation = -3571.450164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03262 -38.32115 -37.67323 -37.08570 -36.53377 -34.70168 -34.26941 -32.26001 -31.09122 -30.18510 -27.60382 -26.21456 -25.40054 -24.68180 -22.31322 -21.79519 -21.18920 -19.72402 -19.00759 -18.64874 -17.67627 -17.40424 -16.93225 -16.48234 -16.31312 -16.15229 -15.80053 -15.29317 -15.22124 -14.89982 -14.61332 -14.34777 -14.11724 -13.83453 -13.72770 -13.53590 -13.48493 -13.28429 -13.25498 -13.24115 -13.12211 -12.83209 -12.72416 -12.59680 -12.47301 -12.26826 -11.89060 -11.86326 -11.67727 -11.55156 -11.43470 -11.24690 -10.79189 -10.09797 -9.46535 -9.37408 -8.31557 -6.37482 -0.83886 0.44729 0.48414 1.34702 1.37310 1.48844 1.58596 2.34451 2.74946 2.80797 3.03406 3.06339 3.50361 3.70290 3.78671 3.86127 3.96274 4.01408 4.10212 4.22369 4.29582 4.39654 4.47449 4.52241 4.57150 4.60575 4.67141 4.75297 4.78737 4.83675 4.86863 4.92664 4.99948 5.01178 5.11326 5.27755 5.30872 5.35515 5.42040 5.46400 5.60474 5.63498 5.69711 5.78310 6.15929 6.23516 6.70543 7.27249 8.85447 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003741 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.882767 B = 7483.281012 C = 8662.108098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.132 4.132 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.102 4.102 9 C 0.113 3.887 10 N -0.998 5.998 11 S 2.622 3.378 12 O -0.986 6.986 13 O -0.981 6.981 14 C -0.610 4.610 15 C -0.102 4.102 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.031 0.969 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.953 3.047 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.242 1.242 25 C 0.162 3.838 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.267 0.733 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 19.057 -23.505 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.082 4.082 8 C -0.140 4.140 9 C -0.011 4.011 10 N -0.836 5.836 11 S 2.719 3.281 12 O -0.976 6.976 13 O -0.972 6.972 14 C -0.741 4.741 15 C -0.142 4.142 16 C -0.043 4.043 17 C -0.582 4.582 18 H 0.049 0.951 19 C -0.194 4.194 20 N -0.591 5.591 21 Si 0.775 3.225 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.166 1.166 25 C 0.037 3.963 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.777 18.196 -23.603 30.357 hybrid contribution -0.241 0.559 1.188 1.335 sum -6.017 18.755 -22.415 29.839 Atomic orbital electron populations 1.20905 0.89839 1.03561 1.03129 1.20229 0.97259 0.92478 0.99750 1.21258 0.94685 0.98071 1.00831 1.21323 0.94645 0.98486 0.99812 1.21275 1.00880 0.91753 1.01100 1.19899 0.93770 0.94908 1.01887 1.19499 0.92763 0.95137 1.00754 1.21067 0.98268 0.91108 1.03527 1.21786 0.81673 0.99527 0.98129 1.57673 1.28706 1.38810 1.58394 1.04536 0.73657 0.73581 0.76299 1.93531 1.30368 1.86628 1.87088 1.93529 1.74972 1.48438 1.80217 1.30575 1.14562 1.10455 1.18497 1.21179 1.01292 0.96809 0.94873 1.19488 0.96941 0.96068 0.91756 1.21545 1.36574 1.06664 0.93453 0.95054 1.26076 0.96655 1.00344 0.96280 1.70077 1.48727 1.37862 1.02475 0.85623 0.79249 0.79791 0.77796 1.18764 1.20983 1.16568 1.20311 0.90974 0.81449 1.03588 0.90038 0.90754 0.90986 0.84593 0.84241 0.84582 0.89690 0.87265 0.88976 0.87964 0.82976 0.83604 0.91650 0.91926 0.95302 0.95124 0.92375 0.88425 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.13 71.24 0.65 -0.60 16 2 C -0.10 -1.49 5.89 -19.77 -0.12 -1.61 16 3 C -0.13 -1.92 9.68 22.20 0.21 -1.70 16 4 C -0.12 -1.84 10.05 22.21 0.22 -1.62 16 5 C -0.13 -2.13 9.62 22.35 0.22 -1.92 16 6 C -0.10 -1.85 5.82 -19.82 -0.12 -1.96 16 7 C -0.08 -1.38 5.76 -19.86 -0.11 -1.49 16 8 C -0.10 -1.41 4.72 29.91 0.14 -1.26 16 9 C 0.11 1.84 6.45 86.33 0.56 2.39 16 10 N -1.00 -20.66 3.18 -516.98 -1.65 -22.31 16 11 S 2.62 73.49 5.45 -56.49 -0.31 73.18 16 12 O -0.99 -33.46 16.93 -127.65 -2.16 -35.62 16 13 O -0.98 -32.52 16.68 -127.65 -2.13 -34.65 16 14 C -0.61 -16.87 6.18 71.98 0.44 -16.43 16 15 C -0.10 -3.98 5.16 30.59 0.16 -3.82 16 16 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 17 C -0.54 -31.80 9.66 25.60 0.25 -31.56 16 18 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 19 C 0.00 0.20 5.47 84.65 0.46 0.66 16 20 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 21 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 25 C 0.16 3.00 6.02 85.63 0.52 3.52 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.73 6.65 -2.39 -0.02 0.72 16 28 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 29 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.14 1.74 8.05 -2.91 -0.02 1.71 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.11 1.03 7.00 -2.39 -0.02 1.01 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.67 6.98 -2.38 -0.02 1.65 16 36 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 40 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 41 H 0.03 1.31 7.57 -2.39 -0.02 1.30 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.10 1.82 7.40 -2.39 -0.02 1.80 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -77.68 364.53 0.47 -77.21 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.92 Total: 14.12 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 3.60 Total: -57.47 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.35 Total: -82.21 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -4.29 Total: -70.27 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 73.49 SS G_CDS: -0.31 Total: 73.18 kcal Total: -77.68 0.47 -77.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171965644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.718 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds