Wall clock time and date at job start Tue Mar 31 2020 13:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 119.85169 * 2 1 4 4 C 1.38249 * 120.06269 * 180.02562 * 3 2 1 5 5 C 1.38482 * 119.90931 * 359.75711 * 4 3 2 6 6 C 1.39351 * 120.16175 * 0.37350 * 5 4 3 7 7 C 1.38207 * 119.85276 * 179.97438 * 2 1 3 8 8 O 1.35902 * 120.82330 * 179.97438 * 6 5 4 9 9 C 1.42958 * 117.76143 * 339.52492 * 8 6 5 10 10 C 1.53539 * 108.79264 * 49.46550 * 9 8 6 11 11 N 1.40469 * 120.17420 * 179.54108 * 5 4 3 12 12 C 1.34775 * 121.15726 * 346.91183 * 11 5 4 13 13 O 1.21563 * 119.99850 * 353.34318 * 12 11 5 14 14 C 1.47861 * 119.99730 * 173.34919 * 12 11 5 15 15 C 1.39929 * 120.02942 * 337.20542 * 14 12 11 16 16 C 1.38325 * 120.35959 * 180.02562 * 15 14 12 17 17 C 1.37756 * 120.41007 * 359.96454 * 16 15 14 18 18 C 1.40753 * 120.04278 * 0.03855 * 17 16 15 19 19 C 1.41441 * 120.17421 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00124 * 27.79711 * 19 18 17 21 21 C 1.39939 * 119.99914 * 207.79696 * 19 18 17 22 22 N 1.30829 * 119.99731 * 13.87394 * 21 19 18 23 23 Si 1.86792 * 120.00252 * 193.87362 * 21 19 18 24 24 H 1.48504 * 109.47209 * 89.99763 * 23 21 19 25 25 H 1.48498 * 109.47391 * 210.00075 * 23 21 19 26 26 H 1.48502 * 109.47200 * 330.00177 * 23 21 19 27 27 C 1.39009 * 120.02111 * 157.23501 * 14 12 11 28 28 H 1.09004 * 109.46778 * 270.01562 * 1 2 3 29 29 H 1.08998 * 109.47404 * 30.01716 * 1 2 3 30 30 H 1.09003 * 109.47219 * 150.01977 * 1 2 3 31 31 H 1.07996 * 119.96909 * 0.09627 * 3 2 1 32 32 H 1.08001 * 120.06146 * 180.02562 * 4 3 2 33 33 H 1.08002 * 119.97157 * 359.97438 * 7 2 1 34 34 H 1.08996 * 109.58727 * 289.67206 * 9 8 6 35 35 H 1.09005 * 109.58262 * 169.25488 * 9 8 6 36 36 H 1.08999 * 109.84121 * 182.26166 * 10 9 8 37 37 H 1.08997 * 109.89261 * 61.32728 * 10 9 8 38 38 H 1.07998 * 119.82024 * 0.03127 * 15 14 12 39 39 H 1.07993 * 119.79614 * 179.97438 * 16 15 14 40 40 H 1.08007 * 119.97824 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99708 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.20788 * 359.69668 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5778 1.2045 -0.0005 5 6 4.2727 0.0067 0.0040 6 6 3.5819 -1.2036 0.0013 7 6 2.1949 -1.1987 0.0005 8 8 4.2503 -2.3869 0.0052 9 6 5.6118 -2.3841 -0.4307 10 6 6.3628 -1.2620 0.3003 11 7 5.6773 0.0053 -0.0062 12 6 6.3738 1.1258 -0.2815 13 8 5.7917 2.1294 -0.6445 14 6 7.8458 1.1344 -0.1421 15 6 8.4752 0.2065 0.6951 16 6 9.8518 0.2087 0.8310 17 6 10.6189 1.1234 0.1436 18 6 10.0035 2.0645 -0.7031 19 6 10.7885 3.0045 -1.4107 20 1 11.8066 2.7645 -1.6796 21 6 10.2460 4.2456 -1.7623 22 7 9.1280 4.6493 -1.2156 23 14 11.1178 5.3258 -3.0122 24 1 10.6245 5.0030 -4.3752 25 1 10.8416 6.7534 -2.7110 26 1 12.5808 5.0797 -2.9442 27 6 8.6053 2.0646 -0.8422 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6524 2.1330 0.0016 32 1 4.1153 2.1412 -0.0001 33 1 1.6520 -2.1323 0.0014 34 1 5.6509 -2.2097 -1.5059 35 1 6.0721 -3.3442 -0.1973 36 1 7.3943 -1.2185 -0.0492 37 1 6.3439 -1.4421 1.3751 38 1 7.8831 -0.5153 1.2380 39 1 10.3281 -0.5112 1.4799 40 1 11.6933 1.1186 0.2545 41 1 8.7518 5.5094 -1.4596 42 1 8.1241 2.7798 -1.4929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172773660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:09 Heat of formation + Delta-G solvation = 0.494948 kcal Electronic energy + Delta-G solvation = -26718.047655 eV Core-core repulsion = 23014.857692 eV Total energy + Delta-G solvation = -3703.189962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20951 -39.01813 -37.80869 -37.15707 -35.26944 -33.83697 -32.35627 -30.64011 -30.12738 -29.61535 -28.85587 -26.55876 -25.48662 -24.17461 -22.87209 -22.39808 -21.02808 -20.41444 -19.21969 -17.82085 -17.57767 -16.86920 -16.40496 -15.80692 -15.52834 -15.27093 -14.95492 -14.71539 -14.37791 -13.93146 -13.75872 -13.65834 -13.39175 -13.34034 -12.88867 -12.81809 -12.55228 -12.30872 -12.21149 -11.78153 -11.70114 -11.52570 -11.24437 -11.15456 -11.02117 -10.91218 -10.70831 -10.35952 -10.06630 -9.85566 -9.72436 -9.33323 -8.96165 -8.31833 -7.83573 -7.60953 -7.47226 -6.86128 -4.53061 1.35151 1.53836 2.10127 2.68649 2.89972 3.02583 3.05551 3.06107 3.33735 3.51173 3.85274 3.96197 4.46585 4.58540 4.74293 4.92781 5.00120 5.11023 5.16842 5.24718 5.40035 5.45445 5.50738 5.53899 5.56299 5.68612 5.79893 5.84997 5.97601 6.05526 6.14980 6.35204 6.39541 6.59378 6.65924 6.74465 6.86811 6.88062 7.02713 7.09995 7.23883 7.43511 7.48974 7.59155 7.68931 7.84502 8.03700 8.37777 8.56982 8.69636 8.71763 10.08226 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.003527 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.071645 B = 7936.112182 C = 9194.522748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.114 4.114 5 C 0.090 3.910 6 C 0.088 3.912 7 C -0.130 4.130 8 O -0.316 6.316 9 C 0.044 3.956 10 C 0.051 3.949 11 N -0.558 5.558 12 C 0.569 3.431 13 O -0.516 6.516 14 C -0.128 4.128 15 C -0.239 4.239 16 C -0.096 4.096 17 C -0.207 4.207 18 C 0.101 3.899 19 C -0.459 4.459 20 H 0.082 0.918 21 C 0.071 3.929 22 N -0.785 5.785 23 Si 0.913 3.087 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.086 4.086 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.286 0.714 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 -10.137 1.669 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.004 4.004 6 C 0.041 3.959 7 C -0.149 4.149 8 O -0.230 6.230 9 C -0.032 4.032 10 C -0.071 4.071 11 N -0.283 5.283 12 C 0.363 3.637 13 O -0.392 6.392 14 C -0.131 4.131 15 C -0.259 4.259 16 C -0.114 4.114 17 C -0.227 4.227 18 C 0.098 3.902 19 C -0.488 4.488 20 H 0.100 0.900 21 C -0.148 4.148 22 N -0.409 5.409 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.186 1.186 27 C -0.106 4.106 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.183 0.817 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.234 -9.535 1.524 14.070 hybrid contribution 0.619 0.624 -0.427 0.977 sum -9.615 -8.911 1.096 13.155 Atomic orbital electron populations 1.20712 0.91031 1.02538 1.02079 1.19613 0.95860 0.92332 1.01053 1.20926 0.93572 0.97419 1.02775 1.21808 0.94176 0.98709 0.98714 1.18082 0.83048 0.93898 1.05401 1.18546 0.91508 0.83110 1.02718 1.20144 0.90104 0.98396 1.06265 1.85983 1.25981 1.28631 1.82426 1.23426 0.80087 1.00526 0.99113 1.23513 1.00312 0.82307 1.00992 1.45739 1.03409 1.11152 1.67974 1.19112 0.88439 0.81113 0.75031 1.90570 1.70537 1.33051 1.45055 1.19307 0.89185 1.00735 1.03892 1.20980 0.94820 1.03110 1.06958 1.20484 0.93412 0.98350 0.99156 1.21184 0.98266 1.01365 1.01842 1.17599 0.91590 0.91245 0.89756 1.19612 0.99874 0.98160 1.31164 0.89972 1.25979 0.94769 0.98662 0.95396 1.69770 1.17167 1.19939 1.34033 0.86223 0.80514 0.78680 0.80847 1.19168 1.20137 1.18555 1.21589 0.93870 0.95944 0.99185 0.91386 0.91581 0.91774 0.85783 0.81725 0.85305 0.91281 0.86140 0.84260 0.89720 0.87186 0.88611 0.88415 0.90331 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.00 36.00 0.36 -0.63 16 2 C -0.09 -1.13 5.88 -104.62 -0.62 -1.75 16 3 C -0.13 -1.87 9.69 -39.56 -0.38 -2.25 16 4 C -0.11 -2.03 8.93 -39.49 -0.35 -2.38 16 5 C 0.09 1.61 6.33 -83.39 -0.53 1.08 16 6 C 0.09 1.39 6.52 -39.00 -0.25 1.14 16 7 C -0.13 -1.78 9.62 -39.42 -0.38 -2.16 16 8 O -0.32 -4.55 10.32 -19.43 -0.20 -4.75 16 9 C 0.04 0.54 7.18 37.44 0.27 0.81 16 10 C 0.05 0.72 4.71 -3.32 -0.02 0.71 16 11 N -0.56 -10.21 3.01 -113.38 -0.34 -10.55 16 12 C 0.57 12.44 7.43 -12.32 -0.09 12.35 16 13 O -0.52 -12.53 13.44 5.31 0.07 -12.46 16 14 C -0.13 -2.90 5.57 -105.04 -0.59 -3.49 16 15 C -0.24 -4.72 7.57 -38.92 -0.29 -5.02 16 16 C -0.10 -1.91 10.01 -39.73 -0.40 -2.30 16 17 C -0.21 -4.65 9.78 -38.81 -0.38 -5.03 16 18 C 0.10 2.55 5.55 -106.87 -0.59 1.96 16 19 C -0.46 -11.63 9.06 -37.73 -0.34 -11.97 16 20 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 21 C 0.07 1.74 5.20 -17.34 -0.09 1.65 16 22 N -0.78 -20.33 10.95 55.55 0.61 -19.73 16 23 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 27 C -0.09 -2.19 8.19 -38.44 -0.31 -2.51 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.17 3.31 5.17 -52.55 -0.27 3.04 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.14 2.00 4.79 -51.93 -0.25 1.75 16 37 H 0.08 1.11 7.54 -51.93 -0.39 0.72 16 38 H 0.11 1.82 4.50 -52.49 -0.24 1.59 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 41 H 0.29 6.82 8.30 -40.82 -0.34 6.49 16 42 H 0.13 3.65 6.03 -52.49 -0.32 3.33 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -29.20 342.87 -9.52 -38.72 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.81 Total: 10.11 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -4.99 Total: -19.80 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.27 Total: -30.28 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.13 Total: -17.21 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.20 -9.52 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172773660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.217 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds