Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 119.85169 * 2 1 4 4 C 1.38249 * 120.06269 * 180.02562 * 3 2 1 5 5 C 1.38482 * 119.90931 * 359.75711 * 4 3 2 6 6 C 1.39351 * 120.16175 * 0.37350 * 5 4 3 7 7 C 1.38207 * 119.85276 * 179.97438 * 2 1 3 8 8 O 1.35902 * 120.82330 * 179.97438 * 6 5 4 9 9 C 1.42958 * 117.76143 * 339.52492 * 8 6 5 10 10 C 1.53539 * 108.79264 * 49.46550 * 9 8 6 11 11 N 1.40469 * 120.17420 * 179.54108 * 5 4 3 12 12 C 1.34775 * 121.15726 * 346.91183 * 11 5 4 13 13 O 1.21563 * 119.99850 * 353.34318 * 12 11 5 14 14 C 1.47861 * 119.99730 * 173.34919 * 12 11 5 15 15 C 1.39929 * 120.02942 * 337.20542 * 14 12 11 16 16 C 1.38325 * 120.35959 * 180.02562 * 15 14 12 17 17 C 1.37756 * 120.41007 * 359.96454 * 16 15 14 18 18 C 1.40753 * 120.04278 * 0.03855 * 17 16 15 19 19 C 1.41441 * 120.17421 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00124 * 27.79711 * 19 18 17 21 21 C 1.39939 * 119.99914 * 207.79696 * 19 18 17 22 22 N 1.30829 * 119.99731 * 13.87394 * 21 19 18 23 23 Si 1.86792 * 120.00252 * 193.87362 * 21 19 18 24 24 H 1.48504 * 109.47209 * 89.99763 * 23 21 19 25 25 H 1.48498 * 109.47391 * 210.00075 * 23 21 19 26 26 H 1.48502 * 109.47200 * 330.00177 * 23 21 19 27 27 C 1.39009 * 120.02111 * 157.23501 * 14 12 11 28 28 H 1.09004 * 109.46778 * 270.01562 * 1 2 3 29 29 H 1.08998 * 109.47404 * 30.01716 * 1 2 3 30 30 H 1.09003 * 109.47219 * 150.01977 * 1 2 3 31 31 H 1.07996 * 119.96909 * 0.09627 * 3 2 1 32 32 H 1.08001 * 120.06146 * 180.02562 * 4 3 2 33 33 H 1.08002 * 119.97157 * 359.97438 * 7 2 1 34 34 H 1.08996 * 109.58727 * 289.67206 * 9 8 6 35 35 H 1.09005 * 109.58262 * 169.25488 * 9 8 6 36 36 H 1.08999 * 109.84121 * 182.26166 * 10 9 8 37 37 H 1.08997 * 109.89261 * 61.32728 * 10 9 8 38 38 H 1.07998 * 119.82024 * 0.03127 * 15 14 12 39 39 H 1.07993 * 119.79614 * 179.97438 * 16 15 14 40 40 H 1.08007 * 119.97824 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99708 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.20788 * 359.69668 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5778 1.2045 -0.0005 5 6 4.2727 0.0067 0.0040 6 6 3.5819 -1.2036 0.0013 7 6 2.1949 -1.1987 0.0005 8 8 4.2503 -2.3869 0.0052 9 6 5.6118 -2.3841 -0.4307 10 6 6.3628 -1.2620 0.3003 11 7 5.6773 0.0053 -0.0062 12 6 6.3738 1.1258 -0.2815 13 8 5.7917 2.1294 -0.6445 14 6 7.8458 1.1344 -0.1421 15 6 8.4752 0.2065 0.6951 16 6 9.8518 0.2087 0.8310 17 6 10.6189 1.1234 0.1436 18 6 10.0035 2.0645 -0.7031 19 6 10.7885 3.0045 -1.4107 20 1 11.8066 2.7645 -1.6796 21 6 10.2460 4.2456 -1.7623 22 7 9.1280 4.6493 -1.2156 23 14 11.1178 5.3258 -3.0122 24 1 10.6245 5.0030 -4.3752 25 1 10.8416 6.7534 -2.7110 26 1 12.5808 5.0797 -2.9442 27 6 8.6053 2.0646 -0.8422 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6524 2.1330 0.0016 32 1 4.1153 2.1412 -0.0001 33 1 1.6520 -2.1323 0.0014 34 1 5.6509 -2.2097 -1.5059 35 1 6.0721 -3.3442 -0.1973 36 1 7.3943 -1.2185 -0.0492 37 1 6.3439 -1.4421 1.3751 38 1 7.8831 -0.5153 1.2380 39 1 10.3281 -0.5112 1.4799 40 1 11.6933 1.1186 0.2545 41 1 8.7518 5.5094 -1.4596 42 1 8.1241 2.7798 -1.4929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172773660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = -15.029295 kcal Electronic energy + Delta-G solvation = -26718.720837 eV Core-core repulsion = 23014.857692 eV Total energy + Delta-G solvation = -3703.863144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52649 -40.49561 -39.08878 -38.70549 -36.72429 -35.59096 -33.53566 -32.00965 -31.63121 -31.30614 -30.00419 -27.88361 -27.10666 -25.38313 -24.32537 -23.74753 -22.68222 -21.76059 -20.69023 -19.41263 -18.90566 -18.11759 -17.79977 -17.34718 -17.04823 -16.71182 -16.49860 -16.06940 -15.74542 -15.32471 -15.02284 -14.88074 -14.81107 -14.47282 -14.39711 -14.28210 -14.07603 -13.60945 -13.44187 -13.18937 -12.90629 -12.84395 -12.64280 -12.57910 -12.54638 -12.33306 -12.07037 -11.83750 -11.75790 -11.42585 -11.15758 -11.07380 -10.52420 -9.62461 -9.47400 -9.40284 -8.76546 -8.66230 -6.43614 -0.00041 0.34593 0.50073 0.94242 1.34883 1.44125 1.49179 1.54816 1.87516 2.16851 2.25597 2.67273 2.77608 3.40282 3.46704 3.59696 3.78806 3.95740 4.02081 4.11412 4.22802 4.28016 4.38489 4.41765 4.50884 4.58814 4.63553 4.70191 4.82594 4.90466 4.96690 5.02486 5.09751 5.12170 5.17462 5.26490 5.27753 5.44456 5.52655 5.61032 5.75479 5.82590 5.87252 5.98286 6.10773 6.24066 6.33581 6.54381 6.83935 6.88651 6.96628 8.29171 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.003527 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.071645 B = 7936.112182 C = 9194.522748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.056 3.944 6 C 0.087 3.913 7 C -0.129 4.129 8 O -0.314 6.314 9 C 0.047 3.953 10 C 0.041 3.959 11 N -0.554 5.554 12 C 0.559 3.441 13 O -0.558 6.558 14 C -0.137 4.137 15 C -0.214 4.214 16 C -0.091 4.091 17 C -0.208 4.208 18 C 0.070 3.930 19 C -0.496 4.496 20 H 0.086 0.914 21 C 0.027 3.973 22 N -0.830 5.830 23 Si 0.984 3.016 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.249 1.249 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.168 0.832 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.285 0.715 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 -13.639 2.765 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.153 4.153 4 C -0.160 4.160 5 C -0.038 4.038 6 C 0.040 3.960 7 C -0.148 4.148 8 O -0.228 6.228 9 C -0.028 4.028 10 C -0.079 4.079 11 N -0.278 5.278 12 C 0.353 3.647 13 O -0.437 6.437 14 C -0.140 4.140 15 C -0.232 4.232 16 C -0.109 4.109 17 C -0.228 4.228 18 C 0.067 3.933 19 C -0.525 4.525 20 H 0.104 0.896 21 C -0.187 4.187 22 N -0.456 5.456 23 Si 0.805 3.195 24 H -0.191 1.191 25 H -0.197 1.197 26 H -0.173 1.173 27 C -0.142 4.142 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.177 0.823 34 H 0.081 0.919 35 H 0.186 0.814 36 H 0.157 0.843 37 H 0.123 0.877 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.319 -13.101 2.639 17.514 hybrid contribution 0.786 1.481 -0.644 1.796 sum -10.534 -11.620 1.995 15.810 Atomic orbital electron populations 1.20813 0.87780 1.04028 1.03564 1.20074 0.98050 0.91243 0.98130 1.21155 0.92349 0.99283 1.02539 1.21664 0.95746 0.97774 1.00844 1.18296 0.82712 0.94882 1.07937 1.18759 0.92368 0.82660 1.02183 1.20590 0.89419 0.99886 1.04923 1.85992 1.26865 1.27627 1.82340 1.23672 0.78976 1.01698 0.98469 1.23786 1.00349 0.81200 1.02582 1.45689 1.04030 1.11247 1.66803 1.19103 0.88388 0.81845 0.75316 1.90563 1.71147 1.34963 1.47073 1.19552 0.89828 1.00723 1.03910 1.21498 0.95400 1.01761 1.04588 1.20982 0.93240 0.98134 0.98542 1.21505 0.99384 1.00856 1.01079 1.17932 0.91699 0.92547 0.91088 1.19882 1.00366 0.99114 1.33146 0.89560 1.26865 0.95255 0.99841 0.96785 1.69893 1.19165 1.20488 1.36092 0.85162 0.79726 0.76717 0.77906 1.19081 1.19675 1.17259 1.21350 0.94557 0.97335 1.00995 0.89699 0.90634 0.89853 0.84157 0.85172 0.82291 0.91914 0.81422 0.84337 0.87687 0.83095 0.83738 0.86968 0.90426 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.00 71.23 0.71 -0.82 16 2 C -0.07 -1.74 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -3.90 9.69 22.28 0.22 -3.68 16 4 C -0.14 -5.24 8.93 22.33 0.20 -5.04 16 5 C 0.06 2.00 6.33 38.08 0.24 2.24 16 6 C 0.09 2.60 6.52 22.65 0.15 2.75 16 7 C -0.13 -3.16 9.62 22.37 0.22 -2.95 16 8 O -0.31 -8.03 10.32 -92.45 -0.95 -8.99 16 9 C 0.05 0.99 7.18 72.16 0.52 1.50 16 10 C 0.04 1.07 4.71 86.41 0.41 1.48 16 11 N -0.55 -20.45 3.01 -630.91 -1.90 -22.35 16 12 C 0.56 25.85 7.43 86.79 0.64 26.49 16 13 O -0.56 -29.72 13.44 -3.91 -0.05 -29.77 16 14 C -0.14 -6.43 5.57 -20.14 -0.11 -6.54 16 15 C -0.21 -8.06 7.57 22.70 0.17 -7.89 16 16 C -0.09 -3.38 10.01 22.18 0.22 -3.16 16 17 C -0.21 -9.30 9.78 22.77 0.22 -9.08 16 18 C 0.07 3.69 5.55 -21.32 -0.12 3.57 16 19 C -0.50 -26.46 9.06 23.47 0.21 -26.25 16 20 H 0.09 4.32 7.88 -2.91 -0.02 4.30 16 21 C 0.03 1.39 5.20 85.25 0.44 1.83 16 22 N -0.83 -46.56 10.95 21.83 0.24 -46.32 16 23 Si 0.98 39.44 29.58 68.60 2.03 41.47 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 27 C -0.12 -6.66 8.19 23.01 0.19 -6.48 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 30 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.13 5.79 5.17 -3.85 -0.02 5.77 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.17 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.14 3.59 4.79 -2.39 -0.01 3.58 16 37 H 0.11 2.35 7.54 -2.39 -0.02 2.33 16 38 H 0.15 4.44 4.50 -2.91 -0.01 4.43 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.29 14.84 8.30 -92.71 -0.77 14.08 16 42 H 0.09 5.79 6.03 -2.91 -0.02 5.78 16 Total: -1.00 -71.56 342.87 4.84 -66.73 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 1.06 Total: 33.09 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 4.41 Total: -33.87 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.66 Total: -68.67 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.01 Total: -38.75 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -71.56 4.84 -66.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172773660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.698 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds