Wall clock time and date at job start Tue Mar 31 2020 14:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30495 * 125.64641 * 2 1 4 4 C 1.34138 * 109.25522 * 179.97438 * 3 2 1 5 5 N 1.48024 * 125.98815 * 179.97438 * 4 3 2 6 6 O 1.21796 * 120.00307 * 0.03457 * 5 4 3 7 7 O 1.21802 * 119.99515 * 180.02562 * 5 4 3 8 8 C 1.34668 * 108.01520 * 359.73618 * 4 3 2 9 9 N 1.35040 * 125.64939 * 179.97438 * 2 1 3 10 10 C 1.46499 * 126.39706 * 0.02562 * 9 2 1 11 11 C 1.52998 * 109.47187 * 85.00073 * 10 9 2 12 12 C 1.50699 * 109.47546 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99753 * 4.63806 * 12 11 10 14 14 O 1.34229 * 120.00487 * 184.63030 * 12 11 10 15 15 C 1.45201 * 116.99742 * 174.86143 * 14 12 11 16 16 C 1.53006 * 109.46556 * 184.42539 * 15 14 12 17 17 C 1.50698 * 115.55082 * 64.76257 * 16 15 14 18 18 H 1.07996 * 119.99862 * 266.57169 * 17 16 15 19 19 C 1.37875 * 120.00337 * 86.56847 * 17 16 15 20 20 N 1.31510 * 120.00519 * 178.75804 * 19 17 16 21 21 Si 1.86810 * 119.99806 * 358.75586 * 19 17 16 22 22 H 1.48491 * 109.46938 * 90.36665 * 21 19 17 23 23 H 1.48505 * 109.46873 * 210.36845 * 21 19 17 24 24 H 1.48501 * 109.46926 * 330.36772 * 21 19 17 25 25 C 1.52999 * 117.50155 * 279.08733 * 16 15 14 26 26 C 1.53001 * 117.49849 * 210.42692 * 16 15 14 27 27 H 1.08990 * 109.47513 * 270.00006 * 1 2 3 28 28 H 1.08998 * 109.47131 * 30.00416 * 1 2 3 29 29 H 1.09005 * 109.47138 * 149.99856 * 1 2 3 30 30 H 1.08004 * 126.58812 * 180.26264 * 8 4 3 31 31 H 1.08994 * 109.47631 * 324.99865 * 10 9 2 32 32 H 1.09007 * 109.46713 * 204.99373 * 10 9 2 33 33 H 1.09008 * 109.47436 * 59.99758 * 11 10 9 34 34 H 1.08998 * 109.47050 * 299.99813 * 11 10 9 35 35 H 1.08995 * 109.47312 * 304.42461 * 15 14 12 36 36 H 1.08994 * 109.46998 * 64.42799 * 15 14 12 37 37 H 0.97003 * 120.00687 * 180.02562 * 20 19 17 38 38 H 1.09000 * 117.49233 * 0.02562 * 25 16 15 39 39 H 1.08996 * 117.50245 * 145.02209 * 25 16 15 40 40 H 1.08992 * 117.50004 * 214.98516 * 26 16 15 41 41 H 1.09002 * 117.49657 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5544 0.6819 0.0006 5 7 4.7268 1.5855 0.0002 6 8 4.5654 2.7927 0.0000 7 8 5.8531 1.1216 0.0003 8 6 3.5925 -0.6642 0.0068 9 7 2.2941 -1.0973 0.0005 10 6 1.8425 -2.4910 0.0006 11 6 1.5662 -2.9377 -1.4364 12 6 1.1023 -4.3715 -1.4365 13 8 0.9223 -4.9482 -0.3900 14 8 0.8888 -5.0079 -2.5989 15 6 0.5545 -6.4190 -2.5261 16 6 0.4572 -6.9936 -3.9408 17 6 1.7411 -6.9990 -4.7298 18 1 1.9743 -6.1745 -5.3872 19 6 2.6180 -8.0564 -4.6125 20 7 3.7268 -8.0728 -5.3195 21 14 2.2312 -9.4660 -3.4492 22 1 1.4681 -10.5122 -4.1759 23 1 3.4982 -10.0449 -2.9345 24 1 1.4199 -8.9611 -2.3125 25 6 -0.8441 -6.7593 -4.7105 26 6 -0.5160 -8.1523 -4.1673 27 1 -0.3634 0.0000 1.0275 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 4.4776 -1.2831 0.0129 31 1 0.9295 -2.5771 0.5897 32 1 2.6165 -3.1236 0.4352 33 1 2.4793 -2.8516 -2.0256 34 1 0.7923 -2.3051 -1.8711 35 1 1.3296 -6.9479 -1.9716 36 1 -0.4023 -6.5399 -2.0182 37 1 4.3436 -8.8169 -5.2373 38 1 -1.6308 -6.1955 -4.2092 39 1 -0.7717 -6.6094 -5.7877 40 1 -0.2278 -8.9182 -4.8872 41 1 -1.0866 -8.5055 -3.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174741763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:56 Heat of formation + Delta-G solvation = -15.979553 kcal Electronic energy + Delta-G solvation = -26487.102508 eV Core-core repulsion = 22372.348895 eV Total energy + Delta-G solvation = -4114.753614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.14783 -42.87099 -41.51246 -38.92657 -37.69930 -37.24416 -36.34105 -34.27303 -33.35155 -32.36305 -29.53662 -29.11107 -27.66877 -27.03092 -25.47899 -23.36591 -22.95024 -22.04191 -21.38708 -21.04595 -20.14638 -19.60571 -18.87130 -18.80489 -18.57389 -17.79770 -17.54513 -17.11629 -16.84250 -16.54459 -15.75209 -15.51729 -15.40343 -14.83598 -14.70900 -14.45559 -14.25496 -13.88790 -13.74028 -13.49777 -13.27782 -13.07908 -12.81785 -12.76059 -12.58666 -12.57511 -12.35791 -12.28178 -12.07646 -11.80139 -11.73913 -11.65618 -11.54682 -11.35881 -10.93697 -10.66910 -10.39540 -10.23806 -8.31854 -6.39931 -0.98152 0.03736 0.44312 1.04316 1.15869 1.33385 1.36259 1.38847 1.45817 1.83307 2.32966 2.97916 3.01617 3.11534 3.24968 3.33911 3.48025 3.64340 3.78143 3.98377 4.09561 4.18941 4.22377 4.28435 4.33494 4.38057 4.55514 4.59448 4.62684 4.64483 4.66360 4.82924 5.00670 5.02531 5.20874 5.22196 5.45360 5.51403 5.59649 5.64804 6.08299 6.27983 6.60897 6.67017 6.71836 7.29536 8.83648 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002598 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.913116 B =10773.530333 C =11612.864232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.262 3.738 3 N -0.492 5.492 4 C 0.008 3.992 5 N 0.068 4.932 6 O -0.192 6.192 7 O -0.152 6.152 8 C 0.091 3.909 9 N -0.435 5.435 10 C 0.116 3.884 11 C -0.127 4.127 12 C 0.464 3.536 13 O -0.537 6.537 14 O -0.348 6.348 15 C 0.115 3.885 16 C -0.039 4.039 17 C -0.483 4.483 18 H 0.033 0.967 19 C 0.021 3.979 20 N -0.947 5.947 21 Si 0.934 3.066 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.235 1.235 25 C -0.154 4.154 26 C -0.182 4.182 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.236 0.764 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 9.972 13.524 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 N -0.213 5.213 4 C -0.201 4.201 5 N 0.583 4.417 6 O -0.400 6.400 7 O -0.368 6.368 8 C -0.053 4.053 9 N -0.116 5.116 10 C -0.004 4.004 11 C -0.165 4.165 12 C 0.308 3.692 13 O -0.428 6.428 14 O -0.264 6.264 15 C 0.041 3.959 16 C -0.040 4.040 17 C -0.521 4.521 18 H 0.051 0.949 19 C -0.177 4.177 20 N -0.587 5.587 21 Si 0.758 3.242 22 H -0.189 1.189 23 H -0.226 1.226 24 H -0.158 1.158 25 C -0.191 4.191 26 C -0.219 4.219 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.252 0.748 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.730 9.996 13.757 20.108 hybrid contribution 1.413 -1.168 -0.047 1.834 sum -9.317 8.828 13.710 18.780 Atomic orbital electron populations 1.20711 0.79861 1.06670 1.06425 1.24291 0.97647 0.78599 0.99816 1.69674 0.99226 1.31089 1.21334 1.20677 0.87399 0.88115 1.23861 1.42539 1.01178 1.00998 0.96941 1.94572 1.92863 0.97329 1.55242 1.94526 1.08382 1.80432 1.53422 1.22909 0.90506 0.92882 0.99037 1.45878 1.04728 1.09369 1.51621 1.22079 1.05856 0.75830 0.96644 1.21689 1.06603 0.89106 0.99117 1.23737 0.73524 0.90359 0.81553 1.90657 1.49387 1.69346 1.33440 1.86540 1.79115 1.26305 1.34422 1.22819 0.99421 0.76370 0.97270 1.19241 0.91056 1.00902 0.92779 1.20372 1.02240 1.05153 1.24338 0.94866 1.25834 0.94299 1.00789 0.96767 1.70033 1.12510 1.33267 1.42856 0.85976 0.77604 0.79747 0.80855 1.18877 1.22552 1.15794 1.22879 0.98282 0.98098 0.99880 1.23082 1.03225 0.92126 1.03507 0.87014 0.87794 0.87124 0.74760 0.84259 0.85676 0.86315 0.84235 0.93142 0.90555 0.92510 0.87307 0.90148 0.90101 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.04 71.24 0.71 0.26 16 2 C 0.26 3.80 7.90 138.13 1.09 4.89 16 3 N -0.49 -11.56 11.23 -178.84 -2.01 -13.57 16 4 C 0.01 0.19 8.02 128.16 1.03 1.21 16 5 N 0.07 1.97 4.45 -50.70 -0.23 1.74 16 6 O -0.19 -6.29 19.24 18.89 0.36 -5.93 16 7 O -0.15 -4.18 19.02 18.88 0.36 -3.82 16 8 C 0.09 1.41 11.25 83.09 0.93 2.35 16 9 N -0.43 -5.25 2.75 -514.29 -1.41 -6.66 16 10 C 0.12 1.03 4.98 86.38 0.43 1.46 16 11 C -0.13 -1.68 6.13 29.85 0.18 -1.49 16 12 C 0.46 11.23 7.95 71.24 0.57 11.80 16 13 O -0.54 -14.67 15.73 21.95 0.35 -14.32 16 14 O -0.35 -11.50 10.15 -51.41 -0.52 -12.03 16 15 C 0.11 4.14 4.93 71.98 0.35 4.50 16 16 C -0.04 -1.59 1.06 -52.93 -0.06 -1.65 16 17 C -0.48 -25.66 9.35 25.60 0.24 -25.43 16 18 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 19 C 0.02 1.14 5.47 84.65 0.46 1.60 16 20 N -0.95 -56.67 13.96 21.45 0.30 -56.37 16 21 Si 0.93 41.19 24.88 68.60 1.71 42.90 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.23 -9.24 5.75 99.48 0.57 -8.67 16 25 C -0.15 -5.25 9.96 30.62 0.30 -4.95 16 26 C -0.18 -6.41 7.63 30.62 0.23 -6.18 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.14 7.36 -2.38 -0.02 0.12 16 30 H 0.24 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.14 0.77 7.82 -2.39 -0.02 0.75 16 32 H 0.13 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.14 1.20 7.67 -2.39 -0.02 1.18 16 35 H 0.05 1.98 6.56 -2.39 -0.02 1.97 16 36 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 3.08 7.30 -2.39 -0.02 3.06 16 41 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -77.60 362.26 6.32 -71.28 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.93 Total: 8.40 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 6.49 Total: -11.62 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -3.35 Total: -74.86 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: 0.55 Total: -36.10 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.71 Total: 42.90 kcal Total: -77.60 6.32 -71.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174741763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.305 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds