Wall clock time and date at job start Tue Mar 31 2020 13:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38266 * 120.11909 * 2 1 4 4 C 1.37935 * 119.77764 * 179.91728 * 3 2 1 5 5 C 1.38916 * 120.54019 * 0.02562 * 4 3 2 6 6 C 1.37659 * 119.68550 * 0.17373 * 5 4 3 7 7 C 1.37938 * 120.11582 * 180.02562 * 2 1 3 8 8 C 1.50629 * 122.57367 * 179.69337 * 6 5 4 9 9 H 1.09007 * 109.22295 * 257.28793 * 8 6 5 10 10 N 1.46493 * 109.25424 * 137.83733 * 8 6 5 11 11 S 1.65601 * 119.99961 * 124.43093 * 10 8 6 12 12 O 1.42098 * 104.27919 * 309.07628 * 11 10 8 13 13 O 1.42104 * 104.27998 * 181.21671 * 11 10 8 14 14 C 1.81401 * 104.45147 * 65.14562 * 11 10 8 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 11 10 16 16 C 1.50703 * 109.46900 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99883 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46827 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46908 * 120.00255 * 20 18 16 23 23 H 1.48503 * 109.47042 * 239.99929 * 20 18 16 24 24 C 1.52732 * 110.58318 * 17.54878 * 8 6 5 25 25 C 1.53331 * 108.37521 * 308.92687 * 24 8 6 26 26 C 1.50632 * 117.74802 * 180.23471 * 5 4 3 27 27 H 1.09002 * 109.47794 * 89.99328 * 1 2 3 28 28 H 1.08998 * 109.47546 * 209.99792 * 1 2 3 29 29 H 1.09008 * 109.46911 * 329.99349 * 1 2 3 30 30 H 1.08003 * 120.11203 * 359.90634 * 3 2 1 31 31 H 1.07989 * 119.73028 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.72091 * 0.02562 * 7 2 1 33 33 H 0.96993 * 120.00196 * 304.42246 * 10 8 6 34 34 H 1.09004 * 109.47296 * 59.99993 * 14 11 10 35 35 H 1.09003 * 109.46962 * 300.00268 * 14 11 10 36 36 H 1.08994 * 109.47021 * 300.00226 * 15 14 11 37 37 H 1.08997 * 109.46934 * 60.00255 * 15 14 11 38 38 H 0.97001 * 120.00147 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.68472 * 68.64990 * 24 8 6 40 40 H 1.09005 * 109.68319 * 189.16797 * 24 8 6 41 41 H 1.09001 * 109.68343 * 189.64436 * 25 24 8 42 42 H 1.09001 * 109.68315 * 310.16781 * 25 24 8 43 43 H 1.09001 * 109.25296 * 77.18099 * 26 5 4 44 44 H 1.09002 * 109.22099 * 317.74080 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1878 0.0017 5 6 4.2788 -0.0129 0.0029 6 6 3.5881 -1.2036 -0.0012 7 6 2.1990 -1.1932 -0.0005 8 6 4.2792 -2.5420 -0.0070 9 1 4.2419 -2.9609 -1.0127 10 7 3.5907 -3.4452 0.9183 11 16 3.0226 -4.9052 0.3814 12 8 2.2674 -4.5824 -0.7782 13 8 2.4023 -5.4812 1.5228 14 6 4.5145 -5.8337 -0.0688 15 6 4.1173 -7.2179 -0.5855 16 6 5.3568 -7.9895 -0.9589 17 1 6.3305 -7.5375 -0.8400 18 6 5.2477 -9.2719 -1.4533 19 7 4.0620 -9.8217 -1.5995 20 14 6.7841 -10.2281 -1.9168 21 1 7.9838 -9.3912 -1.6611 22 1 6.8609 -11.4668 -1.1015 23 1 6.7287 -10.5860 -3.3570 24 6 5.7372 -2.3953 0.4236 25 6 6.3808 -1.2873 -0.4185 26 6 5.7837 0.0515 0.0103 27 1 -0.3635 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6645 2.1335 -0.0015 31 1 4.1212 2.1223 0.0021 32 1 1.6564 -2.1269 -0.0014 33 1 3.4677 -3.1883 1.8454 34 1 5.1529 -5.9430 0.8080 35 1 5.0558 -5.2962 -0.8476 36 1 3.5763 -7.7550 0.1935 37 1 3.4788 -7.1090 -1.4622 38 1 3.9852 -10.7240 -1.9470 39 1 5.7831 -2.1278 1.4792 40 1 6.2648 -3.3350 0.2598 41 1 7.4580 -1.2789 -0.2527 42 1 6.1732 -1.4611 -1.4744 43 1 6.1282 0.2932 1.0158 44 1 6.1130 0.8292 -0.6789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179274089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:07 Heat of formation + Delta-G solvation = -78.310636 kcal Electronic energy + Delta-G solvation = -25475.776016 eV Core-core repulsion = 21904.612739 eV Total energy + Delta-G solvation = -3571.163278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36366 -37.04502 -36.54790 -35.47453 -34.65622 -33.90784 -32.00432 -31.18555 -30.72783 -28.70852 -26.52715 -25.61491 -23.47204 -22.28219 -21.97496 -21.67352 -19.54076 -18.88821 -17.52894 -16.91107 -16.39490 -15.76714 -15.63905 -15.40593 -15.21622 -14.77355 -14.55354 -14.19742 -13.86000 -13.81821 -13.41492 -13.39517 -13.00828 -12.77734 -12.53796 -12.37300 -12.19600 -11.79264 -11.66585 -11.62288 -11.56438 -11.44524 -11.43940 -11.12188 -11.10324 -10.96978 -10.85949 -10.52431 -10.40289 -10.39239 -9.83400 -9.53807 -9.09609 -8.77413 -8.51690 -8.48521 -6.13510 -4.19057 0.74568 1.24846 1.31807 3.10461 3.24579 3.31914 3.35125 3.64218 4.21910 4.36804 4.41020 4.48115 4.66411 4.75777 4.77597 4.87110 4.93482 4.98735 5.07800 5.21849 5.24061 5.32408 5.40014 5.44009 5.51877 5.54780 5.63024 5.66448 5.70012 5.76589 5.81608 5.88763 5.95172 6.02378 6.12306 6.20631 6.38738 6.47064 6.51609 6.59102 6.95162 7.10576 7.28918 7.34886 7.79599 8.16201 8.84560 9.45822 10.97566 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.003381 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.191547 B = 8280.752054 C = 9313.541486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.124 4.124 5 C -0.074 4.074 6 C -0.083 4.083 7 C -0.098 4.098 8 C 0.194 3.806 9 H 0.101 0.899 10 N -1.120 6.120 11 S 2.587 3.413 12 O -0.964 6.964 13 O -0.966 6.966 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.080 4.080 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.413 0.587 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 23.150 4.274 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.085 4.085 7 C -0.116 4.116 8 C 0.087 3.913 9 H 0.119 0.881 10 N -0.875 5.875 11 S 2.684 3.316 12 O -0.954 6.954 13 O -0.957 6.957 14 C -0.722 4.722 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.175 4.175 25 C -0.158 4.158 26 C -0.117 4.117 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.247 0.753 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.233 22.700 3.995 23.051 hybrid contribution 1.342 -0.454 0.076 1.419 sum 1.575 22.246 4.071 22.670 Atomic orbital electron populations 1.20790 0.91235 1.02674 1.02455 1.19868 0.96152 0.93113 1.00317 1.20941 0.94158 0.97378 1.01065 1.21064 0.94163 0.97260 1.01747 1.19586 0.95494 0.92209 1.00141 1.19741 0.93631 0.93932 1.01162 1.21188 0.93685 0.98104 0.98631 1.19504 0.90744 0.87574 0.93476 0.88079 1.55950 1.75810 1.35274 1.20465 1.05748 0.77904 0.73506 0.74406 1.93555 1.68141 1.82289 1.51445 1.93558 1.74563 1.77051 1.50505 1.30477 1.18169 1.12826 1.10763 1.18971 0.98859 0.86179 0.97149 1.21035 0.92188 0.98938 1.43722 0.91963 1.25074 0.96365 0.97659 0.95428 1.69965 1.22534 1.15213 1.45101 0.86417 0.82799 0.79856 0.78231 1.19631 1.20804 1.20798 1.22059 0.94453 1.00003 1.00937 1.21550 0.99991 0.93821 1.00422 1.20491 0.90871 0.98340 1.02010 0.91105 0.91396 0.91737 0.86308 0.86291 0.85532 0.75323 0.85985 0.86303 0.94853 0.94811 0.92577 0.90708 0.90204 0.90847 0.91107 0.90637 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.02 36.00 0.36 -0.74 16 2 C -0.09 -1.09 5.87 -104.73 -0.61 -1.71 16 3 C -0.12 -1.18 9.71 -39.68 -0.39 -1.57 16 4 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 5 C -0.07 -0.77 5.74 -104.62 -0.60 -1.37 16 6 C -0.08 -1.01 5.55 -104.62 -0.58 -1.60 16 7 C -0.10 -1.30 8.87 -39.44 -0.35 -1.65 16 8 C 0.19 2.34 2.68 -69.26 -0.19 2.16 16 9 H 0.10 1.28 7.57 -51.92 -0.39 0.89 16 10 N -1.12 -14.59 4.36 -6.03 -0.03 -14.62 16 11 S 2.59 45.62 5.34 -107.50 -0.57 45.04 16 12 O -0.96 -19.58 17.25 -57.54 -0.99 -20.57 16 13 O -0.97 -19.96 18.08 -57.54 -1.04 -21.00 16 14 C -0.59 -11.00 6.01 37.16 0.22 -10.77 16 15 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.14 -1.31 5.57 -26.70 -0.15 -1.46 16 25 C -0.12 -1.00 5.98 -26.70 -0.16 -1.16 16 26 C -0.08 -0.65 5.67 -28.05 -0.16 -0.81 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.12 0.88 8.05 -52.49 -0.42 0.46 16 32 H 0.13 1.85 7.31 -52.49 -0.38 1.47 16 33 H 0.41 4.65 8.92 -34.47 -0.31 4.34 16 34 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -34.51 371.60 -11.80 -46.31 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.96 Total: 3.53 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -3.53 Total: -34.71 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.71 Total: -40.25 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.03 Total: -41.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 45.62 SS G_CDS: -0.57 Total: 45.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.51 -11.80 -46.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179274089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.998 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds