Wall clock time and date at job start Tue Mar 31 2020 13:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38266 * 120.11909 * 2 1 4 4 C 1.37935 * 119.77764 * 179.91728 * 3 2 1 5 5 C 1.38916 * 120.54019 * 0.02562 * 4 3 2 6 6 C 1.37659 * 119.68550 * 0.17373 * 5 4 3 7 7 C 1.37938 * 120.11582 * 180.02562 * 2 1 3 8 8 C 1.50629 * 122.57367 * 179.69337 * 6 5 4 9 9 H 1.09007 * 109.22295 * 257.28793 * 8 6 5 10 10 N 1.46493 * 109.25424 * 137.83733 * 8 6 5 11 11 S 1.65601 * 119.99961 * 124.43093 * 10 8 6 12 12 O 1.42098 * 104.27919 * 309.07628 * 11 10 8 13 13 O 1.42104 * 104.27998 * 181.21671 * 11 10 8 14 14 C 1.81401 * 104.45147 * 65.14562 * 11 10 8 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 11 10 16 16 C 1.50703 * 109.46900 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99883 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46827 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46908 * 120.00255 * 20 18 16 23 23 H 1.48503 * 109.47042 * 239.99929 * 20 18 16 24 24 C 1.52732 * 110.58318 * 17.54878 * 8 6 5 25 25 C 1.53331 * 108.37521 * 308.92687 * 24 8 6 26 26 C 1.50632 * 117.74802 * 180.23471 * 5 4 3 27 27 H 1.09002 * 109.47794 * 89.99328 * 1 2 3 28 28 H 1.08998 * 109.47546 * 209.99792 * 1 2 3 29 29 H 1.09008 * 109.46911 * 329.99349 * 1 2 3 30 30 H 1.08003 * 120.11203 * 359.90634 * 3 2 1 31 31 H 1.07989 * 119.73028 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.72091 * 0.02562 * 7 2 1 33 33 H 0.96993 * 120.00196 * 304.42246 * 10 8 6 34 34 H 1.09004 * 109.47296 * 59.99993 * 14 11 10 35 35 H 1.09003 * 109.46962 * 300.00268 * 14 11 10 36 36 H 1.08994 * 109.47021 * 300.00226 * 15 14 11 37 37 H 1.08997 * 109.46934 * 60.00255 * 15 14 11 38 38 H 0.97001 * 120.00147 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.68472 * 68.64990 * 24 8 6 40 40 H 1.09005 * 109.68319 * 189.16797 * 24 8 6 41 41 H 1.09001 * 109.68343 * 189.64436 * 25 24 8 42 42 H 1.09001 * 109.68315 * 310.16781 * 25 24 8 43 43 H 1.09001 * 109.25296 * 77.18099 * 26 5 4 44 44 H 1.09002 * 109.22099 * 317.74080 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1878 0.0017 5 6 4.2788 -0.0129 0.0029 6 6 3.5881 -1.2036 -0.0012 7 6 2.1990 -1.1932 -0.0005 8 6 4.2792 -2.5420 -0.0070 9 1 4.2419 -2.9609 -1.0127 10 7 3.5907 -3.4452 0.9183 11 16 3.0226 -4.9052 0.3814 12 8 2.2674 -4.5824 -0.7782 13 8 2.4023 -5.4812 1.5228 14 6 4.5145 -5.8337 -0.0688 15 6 4.1173 -7.2179 -0.5855 16 6 5.3568 -7.9895 -0.9589 17 1 6.3305 -7.5375 -0.8400 18 6 5.2477 -9.2719 -1.4533 19 7 4.0620 -9.8217 -1.5995 20 14 6.7841 -10.2281 -1.9168 21 1 7.9838 -9.3912 -1.6611 22 1 6.8609 -11.4668 -1.1015 23 1 6.7287 -10.5860 -3.3570 24 6 5.7372 -2.3953 0.4236 25 6 6.3808 -1.2873 -0.4185 26 6 5.7837 0.0515 0.0103 27 1 -0.3635 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6645 2.1335 -0.0015 31 1 4.1212 2.1223 0.0021 32 1 1.6564 -2.1269 -0.0014 33 1 3.4677 -3.1883 1.8454 34 1 5.1529 -5.9430 0.8080 35 1 5.0558 -5.2962 -0.8476 36 1 3.5763 -7.7550 0.1935 37 1 3.4788 -7.1090 -1.4622 38 1 3.9852 -10.7240 -1.9470 39 1 5.7831 -2.1278 1.4792 40 1 6.2648 -3.3350 0.2598 41 1 7.4580 -1.2789 -0.2527 42 1 6.1732 -1.4611 -1.4744 43 1 6.1282 0.2932 1.0158 44 1 6.1130 0.8292 -0.6789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179274089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:06 Heat of formation + Delta-G solvation = -100.679559 kcal Electronic energy + Delta-G solvation = -25476.746006 eV Core-core repulsion = 21904.612739 eV Total energy + Delta-G solvation = -3572.133267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17966 -38.23938 -37.78446 -37.05574 -35.90504 -35.55347 -33.14821 -32.76411 -31.63562 -29.50075 -27.60245 -27.33662 -24.28280 -23.61202 -23.07748 -22.73765 -20.57756 -20.08741 -19.13643 -18.32487 -17.79625 -17.09458 -16.72705 -16.52695 -16.43227 -16.11270 -15.99132 -15.14172 -14.96091 -14.65232 -14.58566 -14.47145 -14.21971 -13.88195 -13.73280 -13.60324 -13.28720 -13.15700 -13.15276 -12.98501 -12.94943 -12.78767 -12.68992 -12.32613 -12.27920 -12.24549 -12.09618 -11.86352 -11.74548 -11.59572 -11.30634 -11.11420 -10.65675 -10.46904 -9.65348 -9.27897 -8.25988 -6.39974 -0.73092 0.41688 0.47036 1.41579 1.42146 1.55531 1.80998 2.38234 2.76003 2.81557 3.07730 3.22628 3.55150 3.75270 3.94485 3.98953 4.04348 4.08284 4.12705 4.15809 4.21452 4.28356 4.49203 4.54971 4.68346 4.72684 4.75643 4.77930 4.80057 4.95979 5.04875 5.08499 5.17003 5.19798 5.23830 5.26221 5.27196 5.39268 5.49539 5.59700 5.68580 5.69763 5.74864 6.05333 6.09116 6.16263 6.74050 7.30339 8.86621 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.003381 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.191547 B = 8280.752054 C = 9313.541486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.076 4.076 6 C -0.098 4.098 7 C -0.128 4.128 8 C 0.188 3.812 9 H 0.089 0.911 10 N -1.100 6.100 11 S 2.611 3.389 12 O -0.995 6.995 13 O -0.999 6.999 14 C -0.584 4.584 15 C 0.020 3.980 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.078 4.078 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.100 0.900 33 H 0.424 0.576 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.005 0.995 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 25.760 4.626 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.109 4.109 3 C -0.136 4.136 4 C -0.141 4.141 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.147 4.147 8 C 0.081 3.919 9 H 0.107 0.893 10 N -0.860 5.860 11 S 2.709 3.291 12 O -0.985 6.985 13 O -0.990 6.990 14 C -0.717 4.717 15 C -0.019 4.019 16 C -0.575 4.575 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.114 4.114 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.118 0.882 33 H 0.260 0.740 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.100 25.319 4.359 25.878 hybrid contribution 0.395 -1.149 -0.027 1.216 sum 3.495 24.170 4.331 24.802 Atomic orbital electron populations 1.20825 0.90410 1.03198 1.02760 1.20121 0.97079 0.93250 1.00456 1.21269 0.94715 0.97635 1.00019 1.21461 0.94207 0.98170 1.00247 1.19919 0.97072 0.91667 0.99051 1.19795 0.93262 0.94612 1.02331 1.21184 0.94547 0.97865 1.01109 1.19742 0.92320 0.87220 0.92630 0.89287 1.55433 1.75756 1.33486 1.21280 1.04708 0.77232 0.73942 0.73226 1.93514 1.69125 1.82967 1.52885 1.93503 1.75484 1.78467 1.51514 1.30350 1.19396 1.09484 1.12433 1.18834 0.97976 0.89681 0.95444 1.21546 0.93326 0.99447 1.43178 0.90328 1.26141 0.99831 0.99054 0.95355 1.70115 1.25242 1.15777 1.46366 0.85250 0.78894 0.78243 0.77776 1.17676 1.20481 1.20457 1.22091 0.92359 1.00985 1.01899 1.21582 1.01073 0.93360 0.99697 1.20559 0.88861 0.98652 1.03367 0.90888 0.92496 0.89587 0.83812 0.83325 0.88201 0.73978 0.83531 0.83838 0.97657 0.97578 0.92433 0.89594 0.89896 0.88789 0.91773 0.89122 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 10.02 71.23 0.71 -1.48 16 2 C -0.11 -2.48 5.87 -19.93 -0.12 -2.60 16 3 C -0.12 -2.12 9.71 22.20 0.22 -1.91 16 4 C -0.12 -2.02 9.61 22.36 0.21 -1.80 16 5 C -0.08 -1.42 5.74 -19.86 -0.11 -1.53 16 6 C -0.10 -2.34 5.55 -19.86 -0.11 -2.45 16 7 C -0.13 -3.50 8.87 22.36 0.20 -3.30 16 8 C 0.19 4.41 2.68 44.14 0.12 4.53 16 9 H 0.09 2.28 7.57 -2.38 -0.02 2.26 16 10 N -1.10 -28.75 4.36 -173.00 -0.75 -29.50 16 11 S 2.61 95.33 5.34 -56.49 -0.30 95.03 16 12 O -1.00 -42.59 17.25 -127.65 -2.20 -44.80 16 13 O -1.00 -42.86 18.08 -127.65 -2.31 -45.17 16 14 C -0.58 -21.86 6.01 71.98 0.43 -21.43 16 15 C 0.02 1.02 4.98 29.85 0.15 1.17 16 16 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 17 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 18 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 19 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 C -0.13 -2.29 5.57 30.62 0.17 -2.12 16 25 C -0.12 -1.62 5.98 30.62 0.18 -1.43 16 26 C -0.08 -0.97 5.67 29.74 0.17 -0.80 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.09 1.21 8.09 -2.38 -0.02 1.20 16 30 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.15 1.53 8.05 -2.92 -0.02 1.50 16 32 H 0.10 3.17 7.31 -2.91 -0.02 3.15 16 33 H 0.42 9.45 8.92 -96.75 -0.86 8.59 16 34 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16 35 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 39 H 0.09 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.96 8.10 -2.39 -0.02 0.95 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 0.86 8.13 -2.39 -0.02 0.84 16 Total: -1.00 -77.24 371.60 -0.21 -77.45 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.13 Total: 22.95 kcal Atomic # 6 Polarization: -67.18 SS G_CDS: 2.92 Total: -64.26 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -0.47 Total: -86.28 kcal Atomic # 8 Polarization: -85.45 SS G_CDS: -4.51 Total: -89.96 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 95.33 SS G_CDS: -0.30 Total: 95.03 kcal Total: -77.24 -0.21 -77.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179274089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.228 kcal (2) G-P(sol) polarization free energy of solvation -77.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds