Wall clock time and date at job start Tue Mar 31 2020 13:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.11667 * 2 1 4 4 C 1.37928 * 119.77334 * 180.12390 * 3 2 1 5 5 C 1.38904 * 120.54823 * 359.96005 * 4 3 2 6 6 C 1.37670 * 119.67916 * 359.86428 * 5 4 3 7 7 C 1.37931 * 120.11276 * 180.02562 * 2 1 3 8 8 C 1.50638 * 122.56945 * 180.31335 * 6 5 4 9 9 H 1.08994 * 109.22212 * 102.71418 * 8 6 5 10 10 N 1.46504 * 109.24967 * 222.15961 * 8 6 5 11 11 S 1.65596 * 119.99941 * 217.03737 * 10 8 6 12 12 O 1.42095 * 104.28102 * 309.28098 * 11 10 8 13 13 O 1.42094 * 104.27683 * 181.41827 * 11 10 8 14 14 C 1.81411 * 104.44631 * 65.35053 * 11 10 8 15 15 C 1.53000 * 109.46839 * 184.79837 * 14 11 10 16 16 C 1.50702 * 109.46730 * 184.91342 * 15 14 11 17 17 H 1.07996 * 120.00064 * 355.04062 * 16 15 14 18 18 C 1.37876 * 119.99969 * 174.76198 * 16 15 14 19 19 N 1.31525 * 119.99817 * 0.27807 * 18 16 15 20 20 Si 1.86794 * 120.00382 * 180.27546 * 18 16 15 21 21 H 1.48501 * 109.46925 * 90.00012 * 20 18 16 22 22 H 1.48501 * 109.47362 * 210.00346 * 20 18 16 23 23 H 1.48502 * 109.46985 * 330.00592 * 20 18 16 24 24 C 1.52733 * 110.58268 * 342.44517 * 8 6 5 25 25 C 1.53323 * 108.37456 * 51.08037 * 24 8 6 26 26 C 1.50633 * 117.75333 * 179.80531 * 5 4 3 27 27 H 1.08998 * 109.47159 * 94.99732 * 1 2 3 28 28 H 1.09003 * 109.47114 * 214.99712 * 1 2 3 29 29 H 1.09001 * 109.47265 * 334.99606 * 1 2 3 30 30 H 1.07999 * 120.11613 * 0.09985 * 3 2 1 31 31 H 1.08001 * 119.72805 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.72770 * 359.97438 * 7 2 1 33 33 H 0.96999 * 119.99953 * 37.04562 * 10 8 6 34 34 H 1.09003 * 109.46569 * 64.79692 * 14 11 10 35 35 H 1.08998 * 109.46681 * 304.79877 * 14 11 10 36 36 H 1.08995 * 109.47439 * 64.91681 * 15 14 11 37 37 H 1.08995 * 109.47036 * 304.91007 * 15 14 11 38 38 H 0.96997 * 119.99964 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.68371 * 170.80157 * 24 8 6 40 40 H 1.08997 * 109.68624 * 291.31503 * 24 8 6 41 41 H 1.08993 * 109.68442 * 49.79359 * 25 24 8 42 42 H 1.09000 * 109.68549 * 170.31738 * 25 24 8 43 43 H 1.09000 * 109.25790 * 42.24146 * 26 5 4 44 44 H 1.08995 * 109.25478 * 282.80992 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1959 0.0000 4 6 3.5800 1.1877 -0.0026 5 6 4.2788 -0.0128 -0.0044 6 6 3.5881 -1.2036 -0.0007 7 6 2.1990 -1.1932 -0.0005 8 6 4.2793 -2.5420 0.0046 9 1 4.2419 -2.9612 1.0100 10 7 3.5908 -3.4449 -0.9211 11 16 3.4303 -5.0500 -0.5465 12 8 4.7460 -5.4634 -0.2045 13 8 2.7558 -5.6056 -1.6670 14 6 2.3569 -5.0683 0.9158 15 6 2.2275 -6.5016 1.4355 16 6 1.2419 -6.5356 2.5750 17 1 0.8170 -5.6159 2.9491 18 6 0.8783 -7.7413 3.1362 19 7 1.3957 -8.8614 2.6806 20 14 -0.3492 -7.7842 4.5436 21 1 -1.7246 -7.9067 3.9972 22 1 -0.0586 -8.9483 5.4186 23 1 -0.2403 -6.5316 5.3337 24 6 5.7373 -2.3951 -0.4260 25 6 6.3808 -1.2874 0.4166 26 6 5.7838 0.0517 -0.0117 27 1 -0.3633 -0.0895 -1.0237 28 1 -0.3633 -0.8419 0.5894 29 1 -0.3634 0.9313 0.4344 30 1 1.6646 2.1334 0.0016 31 1 4.1212 2.1223 -0.0030 32 1 1.6564 -2.1270 -0.0005 33 1 3.2290 -3.1026 -1.7535 34 1 1.3710 -4.6886 0.6476 35 1 2.7901 -4.4380 1.6924 36 1 3.1991 -6.8505 1.7850 37 1 1.8764 -7.1490 0.6320 38 1 1.1402 -9.7096 3.0756 39 1 6.2650 -3.3346 -0.2621 40 1 5.7832 -2.1278 -1.4817 41 1 6.1727 -1.4614 1.4722 42 1 7.4582 -1.2793 0.2512 43 1 6.1137 0.8291 0.6775 44 1 6.1283 0.2936 -1.0171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179274099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:10 Heat of formation + Delta-G solvation = -77.776595 kcal Electronic energy + Delta-G solvation = -25584.936441 eV Core-core repulsion = 22013.796321 eV Total energy + Delta-G solvation = -3571.140120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40014 -37.07338 -36.48501 -35.43724 -34.70240 -33.90449 -32.01390 -31.17962 -30.75404 -28.69334 -26.55077 -25.61774 -23.47282 -22.28071 -21.99796 -21.69023 -19.53573 -18.84622 -17.52298 -16.93514 -16.39528 -15.76803 -15.61546 -15.42309 -15.17065 -14.73323 -14.55587 -14.30661 -13.90140 -13.79824 -13.40531 -13.37853 -13.04879 -12.75899 -12.52785 -12.34995 -12.20944 -11.78213 -11.68067 -11.61790 -11.54455 -11.51386 -11.42342 -11.10919 -11.08036 -10.96416 -10.86564 -10.49389 -10.44477 -10.29878 -9.83667 -9.54488 -9.07974 -8.83220 -8.52184 -8.50578 -6.12997 -4.18526 0.75375 1.20713 1.25096 3.11647 3.25638 3.32010 3.34651 3.59122 4.21012 4.36321 4.41028 4.51233 4.66754 4.73619 4.80157 4.87216 4.90095 4.99979 5.07358 5.22177 5.22874 5.28614 5.40498 5.44341 5.49831 5.56909 5.62159 5.67805 5.71210 5.76789 5.79764 5.92486 5.96779 5.99801 6.18510 6.26231 6.36007 6.45717 6.48227 6.53330 6.89452 7.10454 7.28902 7.35643 7.79977 8.16815 8.84890 9.46292 10.98034 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003913 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.169618 B = 7153.037888 C = 8261.272266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.071 4.071 6 C -0.082 4.082 7 C -0.106 4.106 8 C 0.198 3.802 9 H 0.095 0.905 10 N -1.121 6.121 11 S 2.589 3.411 12 O -0.962 6.962 13 O -0.967 6.967 14 C -0.592 4.592 15 C 0.029 3.971 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.136 4.136 25 C -0.119 4.119 26 C -0.081 4.081 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.413 0.587 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.231 21.751 -5.980 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.072 4.072 6 C -0.084 4.084 7 C -0.124 4.124 8 C 0.090 3.910 9 H 0.113 0.887 10 N -0.876 5.876 11 S 2.687 3.313 12 O -0.952 6.952 13 O -0.957 6.957 14 C -0.725 4.725 15 C -0.010 4.010 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.175 4.175 25 C -0.158 4.158 26 C -0.118 4.118 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.247 0.753 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.733 20.757 -6.299 22.437 hybrid contribution -1.335 0.490 0.872 1.668 sum 4.398 21.247 -5.428 22.366 Atomic orbital electron populations 1.20809 0.91117 1.02911 1.02464 1.19857 0.96160 0.93084 0.99938 1.20966 0.94150 0.97465 1.00947 1.21087 0.94181 0.97309 1.01395 1.19591 0.95589 0.92171 0.99829 1.19703 0.93509 0.93912 1.01287 1.21111 0.93500 0.98060 0.99723 1.19475 0.91145 0.87276 0.93055 0.88712 1.56002 1.72423 1.28511 1.30702 1.05678 0.76196 0.72179 0.77256 1.93543 1.36331 1.79838 1.85522 1.93556 1.76886 1.75726 1.49571 1.30493 1.14089 1.10599 1.17317 1.18954 0.99255 0.84955 0.97835 1.20998 1.25380 0.93042 1.16523 0.92058 1.25063 0.96470 0.95563 0.97339 1.69957 1.43192 0.97866 1.41816 0.86480 0.81257 0.77768 0.81847 1.20462 1.20993 1.19762 1.22092 0.94621 1.00308 1.00528 1.21556 1.00007 0.93777 1.00424 1.20508 0.90822 0.98453 1.02028 0.91153 0.91124 0.91710 0.86252 0.86237 0.85663 0.75333 0.86009 0.86492 0.94882 0.94749 0.92523 0.89442 0.91033 0.91186 0.90935 0.90789 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.02 36.01 0.36 -0.66 16 2 C -0.09 -0.95 5.87 -104.73 -0.61 -1.57 16 3 C -0.12 -1.12 9.69 -39.69 -0.38 -1.50 16 4 C -0.12 -1.14 9.61 -39.45 -0.38 -1.52 16 5 C -0.07 -0.73 5.74 -104.62 -0.60 -1.33 16 6 C -0.08 -0.94 5.48 -104.61 -0.57 -1.52 16 7 C -0.11 -1.23 8.83 -39.45 -0.35 -1.57 16 8 C 0.20 2.40 2.55 -69.25 -0.18 2.23 16 9 H 0.10 1.15 7.09 -51.93 -0.37 0.79 16 10 N -1.12 -14.73 4.48 -6.03 -0.03 -14.76 16 11 S 2.59 45.79 5.37 -107.50 -0.58 45.22 16 12 O -0.96 -19.48 17.37 -57.54 -1.00 -20.48 16 13 O -0.97 -20.02 18.08 -57.54 -1.04 -21.06 16 14 C -0.59 -11.16 5.95 37.16 0.22 -10.93 16 15 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 16 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 17 H 0.06 1.59 7.75 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.14 -1.52 5.57 -26.70 -0.15 -1.67 16 25 C -0.12 -1.07 5.98 -26.70 -0.16 -1.23 16 26 C -0.08 -0.67 5.67 -28.05 -0.16 -0.83 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 32 H 0.13 1.43 7.62 -52.48 -0.40 1.03 16 33 H 0.41 4.74 8.72 -34.47 -0.30 4.44 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.12 1.95 7.36 -51.93 -0.38 1.57 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 39 H 0.09 1.10 7.70 -51.93 -0.40 0.71 16 40 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -34.34 369.93 -11.74 -46.09 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.88 Total: 3.51 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -3.51 Total: -34.55 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.71 Total: -40.41 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.04 Total: -41.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.58 Total: 45.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.34 -11.74 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179274099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.690 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds