Wall clock time and date at job start Tue Mar 31 2020 13:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.11667 * 2 1 4 4 C 1.37928 * 119.77334 * 180.12390 * 3 2 1 5 5 C 1.38904 * 120.54823 * 359.96005 * 4 3 2 6 6 C 1.37670 * 119.67916 * 359.86428 * 5 4 3 7 7 C 1.37931 * 120.11276 * 180.02562 * 2 1 3 8 8 C 1.50638 * 122.56945 * 180.31335 * 6 5 4 9 9 H 1.08994 * 109.22212 * 102.71418 * 8 6 5 10 10 N 1.46504 * 109.24967 * 222.15961 * 8 6 5 11 11 S 1.65596 * 119.99941 * 217.03737 * 10 8 6 12 12 O 1.42095 * 104.28102 * 309.28098 * 11 10 8 13 13 O 1.42094 * 104.27683 * 181.41827 * 11 10 8 14 14 C 1.81411 * 104.44631 * 65.35053 * 11 10 8 15 15 C 1.53000 * 109.46839 * 184.79837 * 14 11 10 16 16 C 1.50702 * 109.46730 * 184.91342 * 15 14 11 17 17 H 1.07996 * 120.00064 * 355.04062 * 16 15 14 18 18 C 1.37876 * 119.99969 * 174.76198 * 16 15 14 19 19 N 1.31525 * 119.99817 * 0.27807 * 18 16 15 20 20 Si 1.86794 * 120.00382 * 180.27546 * 18 16 15 21 21 H 1.48501 * 109.46925 * 90.00012 * 20 18 16 22 22 H 1.48501 * 109.47362 * 210.00346 * 20 18 16 23 23 H 1.48502 * 109.46985 * 330.00592 * 20 18 16 24 24 C 1.52733 * 110.58268 * 342.44517 * 8 6 5 25 25 C 1.53323 * 108.37456 * 51.08037 * 24 8 6 26 26 C 1.50633 * 117.75333 * 179.80531 * 5 4 3 27 27 H 1.08998 * 109.47159 * 94.99732 * 1 2 3 28 28 H 1.09003 * 109.47114 * 214.99712 * 1 2 3 29 29 H 1.09001 * 109.47265 * 334.99606 * 1 2 3 30 30 H 1.07999 * 120.11613 * 0.09985 * 3 2 1 31 31 H 1.08001 * 119.72805 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.72770 * 359.97438 * 7 2 1 33 33 H 0.96999 * 119.99953 * 37.04562 * 10 8 6 34 34 H 1.09003 * 109.46569 * 64.79692 * 14 11 10 35 35 H 1.08998 * 109.46681 * 304.79877 * 14 11 10 36 36 H 1.08995 * 109.47439 * 64.91681 * 15 14 11 37 37 H 1.08995 * 109.47036 * 304.91007 * 15 14 11 38 38 H 0.96997 * 119.99964 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.68371 * 170.80157 * 24 8 6 40 40 H 1.08997 * 109.68624 * 291.31503 * 24 8 6 41 41 H 1.08993 * 109.68442 * 49.79359 * 25 24 8 42 42 H 1.09000 * 109.68549 * 170.31738 * 25 24 8 43 43 H 1.09000 * 109.25790 * 42.24146 * 26 5 4 44 44 H 1.08995 * 109.25478 * 282.80992 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1959 0.0000 4 6 3.5800 1.1877 -0.0026 5 6 4.2788 -0.0128 -0.0044 6 6 3.5881 -1.2036 -0.0007 7 6 2.1990 -1.1932 -0.0005 8 6 4.2793 -2.5420 0.0046 9 1 4.2419 -2.9612 1.0100 10 7 3.5908 -3.4449 -0.9211 11 16 3.4303 -5.0500 -0.5465 12 8 4.7460 -5.4634 -0.2045 13 8 2.7558 -5.6056 -1.6670 14 6 2.3569 -5.0683 0.9158 15 6 2.2275 -6.5016 1.4355 16 6 1.2419 -6.5356 2.5750 17 1 0.8170 -5.6159 2.9491 18 6 0.8783 -7.7413 3.1362 19 7 1.3957 -8.8614 2.6806 20 14 -0.3492 -7.7842 4.5436 21 1 -1.7246 -7.9067 3.9972 22 1 -0.0586 -8.9483 5.4186 23 1 -0.2403 -6.5316 5.3337 24 6 5.7373 -2.3951 -0.4260 25 6 6.3808 -1.2874 0.4166 26 6 5.7838 0.0517 -0.0117 27 1 -0.3633 -0.0895 -1.0237 28 1 -0.3633 -0.8419 0.5894 29 1 -0.3634 0.9313 0.4344 30 1 1.6646 2.1334 0.0016 31 1 4.1212 2.1223 -0.0030 32 1 1.6564 -2.1270 -0.0005 33 1 3.2290 -3.1026 -1.7535 34 1 1.3710 -4.6886 0.6476 35 1 2.7901 -4.4380 1.6924 36 1 3.1991 -6.8505 1.7850 37 1 1.8764 -7.1490 0.6320 38 1 1.1402 -9.7096 3.0756 39 1 6.2650 -3.3346 -0.2621 40 1 5.7832 -2.1278 -1.4817 41 1 6.1727 -1.4614 1.4722 42 1 7.4582 -1.2793 0.2512 43 1 6.1137 0.8291 0.6775 44 1 6.1283 0.2936 -1.0171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179274099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:09 Heat of formation + Delta-G solvation = -99.777598 kcal Electronic energy + Delta-G solvation = -25585.890476 eV Core-core repulsion = 22013.796321 eV Total energy + Delta-G solvation = -3572.094155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18801 -38.26783 -37.72763 -37.02336 -35.91265 -35.59681 -33.14649 -32.76349 -31.61554 -29.49969 -27.61740 -27.31266 -24.28085 -23.64163 -23.06653 -22.74108 -20.56076 -20.07523 -19.11998 -18.36563 -17.78669 -17.06321 -16.72224 -16.53296 -16.47110 -16.03635 -15.95517 -15.20848 -14.96624 -14.67362 -14.56742 -14.47214 -14.20376 -13.87785 -13.74373 -13.58519 -13.25923 -13.16222 -13.10642 -12.96305 -12.94546 -12.79796 -12.71198 -12.37795 -12.26544 -12.23064 -12.11847 -11.85132 -11.77642 -11.61643 -11.32331 -11.11091 -10.65255 -10.46006 -9.64533 -9.26169 -8.26557 -6.40465 -0.72796 0.42302 0.48808 1.40281 1.41946 1.53071 1.81012 2.37418 2.75900 2.82048 3.06973 3.23927 3.52674 3.75467 3.93413 3.94319 4.03511 4.06119 4.14078 4.16802 4.20061 4.29532 4.50971 4.56761 4.66083 4.73308 4.75478 4.79640 4.84492 4.97237 5.04915 5.06155 5.16938 5.20976 5.23777 5.25883 5.28310 5.40289 5.46327 5.60424 5.67556 5.70887 5.76110 6.05252 6.07919 6.16159 6.72867 7.29683 8.85756 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003913 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.169618 B = 7153.037888 C = 8261.272266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.095 4.095 7 C -0.126 4.126 8 C 0.191 3.809 9 H 0.091 0.909 10 N -1.101 6.101 11 S 2.618 3.382 12 O -0.989 6.989 13 O -0.998 6.998 14 C -0.590 4.590 15 C 0.022 3.978 16 C -0.538 4.538 17 H 0.074 0.926 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.258 1.258 24 C -0.138 4.138 25 C -0.117 4.117 26 C -0.078 4.078 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.424 0.576 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 24.996 -5.386 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.078 4.078 6 C -0.096 4.096 7 C -0.145 4.145 8 C 0.085 3.915 9 H 0.109 0.891 10 N -0.861 5.861 11 S 2.714 3.286 12 O -0.978 6.978 13 O -0.988 6.988 14 C -0.722 4.722 15 C -0.017 4.017 16 C -0.577 4.577 17 H 0.093 0.907 18 C -0.201 4.201 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.182 1.182 24 C -0.177 4.177 25 C -0.155 4.155 26 C -0.115 4.115 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.260 0.740 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.445 24.013 -5.708 25.276 hybrid contribution -1.204 -0.432 0.641 1.431 sum 4.240 23.582 -5.067 24.490 Atomic orbital electron populations 1.20836 0.90234 1.03389 1.02825 1.20098 0.97030 0.93173 0.99923 1.21289 0.94564 0.97943 0.99942 1.21410 0.94317 0.97976 1.00282 1.19870 0.96763 0.91962 0.99228 1.19630 0.93496 0.93738 1.02781 1.21204 0.93816 0.98454 1.00997 1.19675 0.91819 0.87589 0.92461 0.89141 1.55516 1.72326 1.26898 1.31332 1.04563 0.75044 0.72909 0.76039 1.93508 1.37478 1.81126 1.85724 1.93506 1.77379 1.77360 1.50589 1.30377 1.16055 1.06904 1.18865 1.18807 0.97575 0.88400 0.96888 1.21494 1.25528 0.93699 1.17007 0.90741 1.26093 0.98558 0.95146 1.00275 1.70102 1.44999 0.98628 1.43594 0.85334 0.78551 0.78250 0.78265 1.19593 1.20765 1.18220 1.22092 0.93777 1.00415 1.01448 1.21565 1.00860 0.93398 0.99695 1.20547 0.89416 0.98289 1.03213 0.90609 0.91904 0.90210 0.84068 0.83680 0.86362 0.74020 0.84157 0.84213 0.97225 0.97608 0.92375 0.91397 0.90424 0.91550 0.89323 0.88847 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 10.02 71.24 0.71 -1.14 16 2 C -0.10 -1.98 5.87 -19.93 -0.12 -2.09 16 3 C -0.12 -1.94 9.69 22.20 0.22 -1.72 16 4 C -0.12 -1.88 9.61 22.36 0.21 -1.67 16 5 C -0.08 -1.39 5.74 -19.86 -0.11 -1.50 16 6 C -0.09 -2.04 5.48 -19.86 -0.11 -2.15 16 7 C -0.13 -2.80 8.83 22.36 0.20 -2.61 16 8 C 0.19 4.53 2.55 44.14 0.11 4.64 16 9 H 0.09 2.19 7.09 -2.39 -0.02 2.17 16 10 N -1.10 -28.73 4.48 -172.98 -0.77 -29.51 16 11 S 2.62 94.70 5.37 -56.49 -0.30 94.39 16 12 O -0.99 -41.18 17.37 -127.65 -2.22 -43.39 16 13 O -1.00 -42.35 18.08 -127.65 -2.31 -44.66 16 14 C -0.59 -22.55 5.95 71.98 0.43 -22.12 16 15 C 0.02 1.17 4.98 29.85 0.15 1.31 16 16 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 17 H 0.07 3.83 7.75 -2.91 -0.02 3.81 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 19 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 20 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.14 -2.97 5.57 30.61 0.17 -2.80 16 25 C -0.12 -1.87 5.98 30.62 0.18 -1.69 16 26 C -0.08 -1.05 5.67 29.74 0.17 -0.88 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.08 1.00 8.05 -2.39 -0.02 0.98 16 30 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.15 1.46 8.05 -2.91 -0.02 1.43 16 32 H 0.12 2.66 7.62 -2.91 -0.02 2.64 16 33 H 0.42 9.54 8.72 -96.75 -0.84 8.69 16 34 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 35 H 0.14 4.63 7.36 -2.39 -0.02 4.61 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.07 1.72 7.70 -2.39 -0.02 1.70 16 40 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 41 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 0.93 8.13 -2.39 -0.02 0.91 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -75.20 369.93 -0.24 -75.43 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.15 Total: 22.75 kcal Atomic # 6 Polarization: -66.66 SS G_CDS: 2.91 Total: -63.75 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -0.49 Total: -86.15 kcal Atomic # 8 Polarization: -83.53 SS G_CDS: -4.53 Total: -88.05 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 94.70 SS G_CDS: -0.30 Total: 94.39 kcal Total: -75.20 -0.24 -75.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179274099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.344 kcal (2) G-P(sol) polarization free energy of solvation -75.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds