Wall clock time and date at job start Tue Mar 31 2020 13:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47259 * 300.00825 * 3 2 1 6 6 H 1.48500 * 109.46721 * 60.00565 * 3 2 1 7 7 C 1.37875 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46844 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.46881 * 180.02562 * 10 9 7 12 12 C 1.35910 * 117.00250 * 180.02562 * 11 10 9 13 13 C 1.38927 * 119.96665 * 0.02562 * 12 11 10 14 14 C 1.38303 * 120.30613 * 179.97438 * 13 12 11 15 15 C 1.37910 * 120.23887 * 0.02562 * 14 13 12 16 16 C 1.39919 * 119.93359 * 359.72480 * 15 14 13 17 17 C 1.47070 * 120.15313 * 180.29405 * 16 15 14 18 18 C 1.35161 * 120.00449 * 0.23774 * 17 16 15 19 19 C 1.46115 * 120.00678 * 179.97438 * 18 17 16 20 20 O 1.21697 * 119.99567 * 0.02562 * 19 18 17 21 21 C 1.48179 * 120.00577 * 179.97438 * 19 18 17 22 22 C 1.39861 * 120.92076 * 359.72272 * 21 19 18 23 23 C 1.38113 * 118.99924 * 179.79824 * 22 21 19 24 24 N 1.31843 * 120.89426 * 0.48156 * 23 22 21 25 25 C 1.31828 * 122.05740 * 359.74806 * 24 23 22 26 26 C 1.38116 * 120.90044 * 0.02562 * 25 24 23 27 27 C 1.38359 * 119.97037 * 180.02562 * 12 11 10 28 28 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47087 * 60.00359 * 9 7 2 30 30 H 1.09001 * 109.47232 * 299.99975 * 9 7 2 31 31 H 1.08994 * 109.47341 * 59.99897 * 10 9 7 32 32 H 1.09001 * 109.46987 * 299.99882 * 10 9 7 33 33 H 1.07996 * 119.84193 * 359.97438 * 13 12 11 34 34 H 1.08004 * 119.88113 * 180.02562 * 14 13 12 35 35 H 1.08002 * 120.03327 * 180.02562 * 15 14 13 36 36 H 1.08006 * 120.00247 * 180.23468 * 17 16 15 37 37 H 1.08006 * 119.99834 * 359.97438 * 18 17 16 38 38 H 1.07999 * 120.50783 * 359.97438 * 22 21 19 39 39 H 1.07997 * 119.55403 * 180.22995 * 23 22 21 40 40 H 1.07999 * 119.55132 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.50396 * 179.97438 * 26 25 24 42 42 H 1.08002 * 120.11621 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8995 -0.0011 12 6 2.2709 -6.0394 -0.0007 13 6 3.6583 -5.9660 0.0009 14 6 4.4183 -7.1214 0.0019 15 6 3.8046 -8.3565 0.0008 16 6 2.4080 -8.4421 0.0046 17 6 1.7485 -9.7566 0.0100 18 6 2.4916 -10.8856 0.0162 19 6 1.8364 -12.1916 0.0222 20 8 0.6215 -12.2628 0.0210 21 6 2.6511 -13.4293 0.0285 22 6 4.0484 -13.3700 0.0230 23 6 4.7687 -14.5484 0.0334 24 7 4.1563 -15.7160 0.0388 25 6 2.8419 -15.8168 0.0395 26 6 2.0441 -14.6894 0.0340 27 6 1.6421 -7.2718 -0.0018 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 4.1454 -5.0021 0.0013 34 1 5.4964 -7.0564 0.0035 35 1 4.4013 -9.2566 0.0020 36 1 0.6703 -9.8199 0.0090 37 1 3.5698 -10.8224 0.0168 38 1 4.5567 -12.4172 0.0137 39 1 5.8480 -14.5130 0.0331 40 1 2.3826 -16.7943 0.0436 41 1 0.9679 -14.7794 0.0342 42 1 0.5636 -7.3299 -0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182240028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:59 Heat of formation + Delta-G solvation = -4.248150 kcal Electronic energy + Delta-G solvation = -23937.254699 eV Core-core repulsion = 20233.859061 eV Total energy + Delta-G solvation = -3703.395639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90873 -39.97053 -39.22035 -37.54118 -34.14416 -33.42298 -33.17971 -31.79718 -31.14065 -30.02922 -29.07526 -26.25862 -25.17014 -24.13417 -23.39364 -22.62197 -21.66307 -20.52632 -19.39676 -18.28044 -17.48716 -16.90610 -16.41228 -16.18315 -15.85590 -15.74359 -15.45975 -15.36995 -15.09472 -14.72355 -14.52091 -14.28033 -14.05770 -14.02627 -13.50206 -13.18056 -13.05692 -12.50887 -12.37254 -12.07197 -11.80290 -11.69084 -11.35913 -11.00775 -10.82790 -10.61826 -10.57492 -10.43849 -10.37900 -9.95306 -9.90886 -9.73369 -9.70872 -9.35212 -8.60934 -8.50103 -8.03821 -6.15756 -4.20870 -0.20919 0.54196 0.59756 1.43907 1.77129 2.69277 3.22768 3.29667 3.32773 3.37721 3.39084 3.69315 3.81196 3.92356 4.20141 4.35453 4.42118 4.49041 4.56193 4.66521 4.78720 4.91897 5.02628 5.05016 5.15877 5.20920 5.24388 5.32394 5.40483 5.42081 5.55470 5.73228 5.90813 5.92697 5.93644 6.00041 6.09539 6.29347 6.37736 6.44454 6.58710 6.71671 7.07648 7.39775 7.41893 7.56513 7.72004 7.93875 8.16905 8.84830 9.43972 10.95742 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.041171 B = 0.001624 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.923527 B =17239.113236 C =17898.537578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.313 6.313 12 C 0.142 3.858 13 C -0.192 4.192 14 C -0.084 4.084 15 C -0.145 4.145 16 C -0.057 4.057 17 C 0.015 3.985 18 C -0.253 4.253 19 C 0.426 3.574 20 O -0.451 6.451 21 C -0.109 4.109 22 C -0.129 4.129 23 C 0.091 3.909 24 N -0.469 5.469 25 C 0.092 3.908 26 C -0.121 4.121 27 C -0.131 4.131 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -27.904 0.042 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.010 4.010 11 O -0.226 6.226 12 C 0.095 3.905 13 C -0.211 4.211 14 C -0.102 4.102 15 C -0.163 4.163 16 C -0.057 4.057 17 C -0.004 4.004 18 C -0.272 4.272 19 C 0.307 3.693 20 O -0.329 6.329 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.066 4.066 24 N -0.179 5.179 25 C -0.065 4.065 26 C -0.141 4.141 27 C -0.149 4.149 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.987 -28.523 0.044 29.905 hybrid contribution 0.296 1.866 -0.003 1.889 sum 9.284 -26.657 0.041 28.227 Atomic orbital electron populations 1.69982 1.06114 1.26936 1.49586 1.24991 0.94908 0.99423 0.94832 0.86426 0.79952 0.83212 0.77765 1.19640 1.20809 1.20804 1.20995 0.93081 0.90163 1.52394 0.92286 1.19140 0.94174 0.88972 0.98969 1.23385 0.97190 0.80670 0.99743 1.86205 1.36457 1.13160 1.86825 1.19085 0.90127 0.87662 0.93649 1.21624 0.93178 1.00195 1.06116 1.20859 0.99774 0.91669 0.97922 1.21176 0.93318 0.97794 1.03986 1.18669 0.93176 0.91699 1.02200 1.22665 1.00458 0.90690 0.86560 1.23239 1.01351 0.92325 1.10280 1.20363 0.88027 0.88526 0.72411 1.90667 1.15801 1.89619 1.36770 1.20919 0.94692 0.95240 1.00957 1.22500 0.93470 1.00947 0.97934 1.22844 1.00884 0.87174 0.95659 1.67586 1.11712 1.28824 1.09795 1.22827 0.89049 0.98897 0.95695 1.22443 1.02475 0.92189 0.96994 1.20669 1.00464 0.89126 1.04661 0.92704 0.95323 0.95331 0.92973 0.92985 0.84772 0.85565 0.85765 0.84585 0.84576 0.83642 0.81998 0.82043 0.83623 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.63 5.34 -27.88 -0.15 0.48 16 10 C 0.06 1.30 4.68 37.16 0.17 1.48 16 11 O -0.31 -6.09 10.13 -19.46 -0.20 -6.28 16 12 C 0.14 2.27 6.68 -39.28 -0.26 2.00 16 13 C -0.19 -2.67 9.04 -39.30 -0.36 -3.02 16 14 C -0.08 -0.93 10.02 -39.68 -0.40 -1.32 16 15 C -0.14 -1.47 9.41 -39.07 -0.37 -1.83 16 16 C -0.06 -0.65 5.87 -105.08 -0.62 -1.27 16 17 C 0.01 0.15 9.46 -37.10 -0.35 -0.20 16 18 C -0.25 -2.13 8.93 -37.52 -0.33 -2.46 16 19 C 0.43 4.09 7.08 -32.34 -0.23 3.86 16 20 O -0.45 -5.60 16.34 5.19 0.08 -5.51 16 21 C -0.11 -0.88 5.91 -104.60 -0.62 -1.50 16 22 C -0.13 -0.79 9.53 -39.02 -0.37 -1.16 16 23 C 0.09 0.58 11.17 -17.59 -0.20 0.38 16 24 N -0.47 -3.82 10.34 -13.31 -0.14 -3.96 16 25 C 0.09 0.64 11.17 -17.60 -0.20 0.44 16 26 C -0.12 -0.92 9.68 -39.02 -0.38 -1.30 16 27 C -0.13 -1.80 9.74 -38.93 -0.38 -2.18 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.00 7.65 -51.93 -0.40 0.60 16 32 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 33 H 0.13 1.82 6.28 -52.49 -0.33 1.49 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 35 H 0.12 0.87 6.16 -52.49 -0.32 0.54 16 36 H 0.14 1.35 7.52 -52.48 -0.39 0.96 16 37 H 0.14 0.80 4.43 -52.48 -0.23 0.56 16 38 H 0.15 0.51 6.37 -52.49 -0.33 0.18 16 39 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.15 1.00 7.74 -52.49 -0.41 0.59 16 42 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -32.34 367.61 -9.33 -41.67 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.89 Total: -1.31 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -5.44 Total: -20.71 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.60 Total: -29.23 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.11 Total: -11.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.34 -9.33 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182240028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.417 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds