Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47259 * 300.00825 * 3 2 1 6 6 H 1.48500 * 109.46721 * 60.00565 * 3 2 1 7 7 C 1.37875 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46844 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.46881 * 180.02562 * 10 9 7 12 12 C 1.35910 * 117.00250 * 180.02562 * 11 10 9 13 13 C 1.38927 * 119.96665 * 0.02562 * 12 11 10 14 14 C 1.38303 * 120.30613 * 179.97438 * 13 12 11 15 15 C 1.37910 * 120.23887 * 0.02562 * 14 13 12 16 16 C 1.39919 * 119.93359 * 359.72480 * 15 14 13 17 17 C 1.47070 * 120.15313 * 180.29405 * 16 15 14 18 18 C 1.35161 * 120.00449 * 0.23774 * 17 16 15 19 19 C 1.46115 * 120.00678 * 179.97438 * 18 17 16 20 20 O 1.21697 * 119.99567 * 0.02562 * 19 18 17 21 21 C 1.48179 * 120.00577 * 179.97438 * 19 18 17 22 22 C 1.39861 * 120.92076 * 359.72272 * 21 19 18 23 23 C 1.38113 * 118.99924 * 179.79824 * 22 21 19 24 24 N 1.31843 * 120.89426 * 0.48156 * 23 22 21 25 25 C 1.31828 * 122.05740 * 359.74806 * 24 23 22 26 26 C 1.38116 * 120.90044 * 0.02562 * 25 24 23 27 27 C 1.38359 * 119.97037 * 180.02562 * 12 11 10 28 28 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47087 * 60.00359 * 9 7 2 30 30 H 1.09001 * 109.47232 * 299.99975 * 9 7 2 31 31 H 1.08994 * 109.47341 * 59.99897 * 10 9 7 32 32 H 1.09001 * 109.46987 * 299.99882 * 10 9 7 33 33 H 1.07996 * 119.84193 * 359.97438 * 13 12 11 34 34 H 1.08004 * 119.88113 * 180.02562 * 14 13 12 35 35 H 1.08002 * 120.03327 * 180.02562 * 15 14 13 36 36 H 1.08006 * 120.00247 * 180.23468 * 17 16 15 37 37 H 1.08006 * 119.99834 * 359.97438 * 18 17 16 38 38 H 1.07999 * 120.50783 * 359.97438 * 22 21 19 39 39 H 1.07997 * 119.55403 * 180.22995 * 23 22 21 40 40 H 1.07999 * 119.55132 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.50396 * 179.97438 * 26 25 24 42 42 H 1.08002 * 120.11621 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8995 -0.0011 12 6 2.2709 -6.0394 -0.0007 13 6 3.6583 -5.9660 0.0009 14 6 4.4183 -7.1214 0.0019 15 6 3.8046 -8.3565 0.0008 16 6 2.4080 -8.4421 0.0046 17 6 1.7485 -9.7566 0.0100 18 6 2.4916 -10.8856 0.0162 19 6 1.8364 -12.1916 0.0222 20 8 0.6215 -12.2628 0.0210 21 6 2.6511 -13.4293 0.0285 22 6 4.0484 -13.3700 0.0230 23 6 4.7687 -14.5484 0.0334 24 7 4.1563 -15.7160 0.0388 25 6 2.8419 -15.8168 0.0395 26 6 2.0441 -14.6894 0.0340 27 6 1.6421 -7.2718 -0.0018 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 4.1454 -5.0021 0.0013 34 1 5.4964 -7.0564 0.0035 35 1 4.4013 -9.2566 0.0020 36 1 0.6703 -9.8199 0.0090 37 1 3.5698 -10.8224 0.0168 38 1 4.5567 -12.4172 0.0137 39 1 5.8480 -14.5130 0.0331 40 1 2.3826 -16.7943 0.0436 41 1 0.9679 -14.7794 0.0342 42 1 0.5636 -7.3299 -0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182240028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = -21.923426 kcal Electronic energy + Delta-G solvation = -23938.021157 eV Core-core repulsion = 20233.859061 eV Total energy + Delta-G solvation = -3704.162096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51198 -41.06622 -39.96926 -38.71069 -35.54930 -34.89182 -33.78898 -32.64654 -32.28552 -31.30298 -30.14306 -27.24444 -26.72625 -24.79948 -24.21739 -23.59684 -23.04112 -21.68388 -20.28176 -19.16229 -18.64562 -18.02391 -17.55990 -17.06175 -16.96377 -16.75548 -16.60195 -16.39010 -16.20296 -15.84185 -15.36730 -15.04999 -14.70913 -14.63534 -14.44177 -14.41095 -14.36171 -14.25116 -13.43214 -13.30508 -13.06650 -12.75316 -12.62804 -12.49948 -12.39973 -11.97074 -11.77311 -11.57002 -11.39063 -11.32093 -11.19485 -10.95855 -10.63837 -10.46725 -10.17189 -9.54059 -9.09954 -8.27571 -6.41415 -0.93980 -0.15626 0.12613 0.47107 0.93358 1.41170 1.41905 1.55349 1.97885 2.22982 2.46698 2.76644 2.82667 2.90257 3.07281 3.52237 3.62553 3.77657 3.85487 3.91434 4.01316 4.09086 4.12243 4.20530 4.24453 4.26339 4.30852 4.50270 4.51304 4.60527 4.72570 4.80710 4.83783 4.93407 4.98585 5.08466 5.25857 5.29767 5.37927 5.45553 5.45764 5.56068 5.64212 5.66924 5.82424 6.05853 6.35680 6.51918 6.73959 6.91954 7.29163 8.85686 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.041171 B = 0.001624 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.923527 B =17239.113236 C =17898.537578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.343 6.343 12 C 0.103 3.897 13 C -0.205 4.205 14 C -0.077 4.077 15 C -0.130 4.130 16 C -0.050 4.050 17 C -0.005 4.005 18 C -0.227 4.227 19 C 0.425 3.575 20 O -0.489 6.489 21 C -0.128 4.128 22 C -0.118 4.118 23 C 0.087 3.913 24 N -0.492 5.492 25 C 0.086 3.914 26 C -0.133 4.133 27 C -0.150 4.150 28 H 0.266 0.734 29 H -0.002 1.002 30 H -0.003 1.003 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.192 0.808 40 H 0.181 0.819 41 H 0.143 0.857 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.647 -29.353 0.045 32.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.091 0.909 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.258 6.258 12 C 0.057 3.943 13 C -0.224 4.224 14 C -0.095 4.095 15 C -0.148 4.148 16 C -0.051 4.051 17 C -0.023 4.023 18 C -0.245 4.245 19 C 0.309 3.691 20 O -0.368 6.368 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.070 4.070 24 N -0.202 5.202 25 C -0.070 4.070 26 C -0.153 4.153 27 C -0.169 4.169 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.142 0.858 37 H 0.191 0.809 38 H 0.196 0.804 39 H 0.209 0.791 40 H 0.198 0.802 41 H 0.161 0.839 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.154 -30.007 0.047 32.763 hybrid contribution -0.977 2.042 -0.004 2.264 sum 12.177 -27.965 0.043 30.501 Atomic orbital electron populations 1.70130 1.08102 1.28144 1.50684 1.26050 0.95801 1.03735 0.94156 0.85228 0.79130 0.77845 0.77800 1.17936 1.20349 1.20340 1.21441 0.93915 0.90948 1.52027 0.90898 1.18986 0.94637 0.91542 0.95966 1.22881 0.95363 0.80029 1.00706 1.86102 1.37549 1.13809 1.88310 1.19386 0.91312 0.86731 0.96828 1.21756 0.92263 1.01591 1.06766 1.21280 1.01400 0.90711 0.96066 1.21694 0.92690 0.99263 1.01131 1.18803 0.94018 0.91118 1.01123 1.22533 1.00282 0.90698 0.88826 1.23485 1.02835 0.90876 1.07297 1.20752 0.87649 0.89649 0.71078 1.90665 1.17518 1.90141 1.38504 1.20931 0.95715 0.94491 1.02582 1.22822 0.92337 1.02410 0.96160 1.23398 1.02339 0.86680 0.94558 1.67632 1.12124 1.30093 1.10396 1.23120 0.88911 0.99579 0.95352 1.22541 1.02616 0.92653 0.97455 1.20788 1.00655 0.89571 1.05850 0.92489 0.98407 0.98415 0.91903 0.91918 0.84985 0.81894 0.81271 0.85758 0.80944 0.80365 0.79096 0.80181 0.83921 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.40 5.34 29.85 0.16 1.56 16 10 C 0.08 3.58 4.68 71.98 0.34 3.91 16 11 O -0.34 -14.16 10.13 -92.54 -0.94 -15.10 16 12 C 0.10 3.37 6.68 22.46 0.15 3.52 16 13 C -0.21 -5.46 9.04 22.45 0.20 -5.25 16 14 C -0.08 -1.40 10.02 22.21 0.22 -1.18 16 15 C -0.13 -2.06 9.41 22.60 0.21 -1.85 16 16 C -0.05 -1.06 5.87 -20.16 -0.12 -1.18 16 17 C 0.00 -0.09 9.46 23.88 0.23 0.14 16 18 C -0.23 -3.06 8.93 23.61 0.21 -2.85 16 19 C 0.43 7.46 7.08 26.96 0.19 7.65 16 20 O -0.49 -12.17 16.34 -4.34 -0.07 -12.24 16 21 C -0.13 -1.80 5.91 -19.85 -0.12 -1.92 16 22 C -0.12 -0.97 9.53 22.63 0.22 -0.75 16 23 C 0.09 0.79 11.17 84.66 0.95 1.74 16 24 N -0.49 -6.90 10.34 -196.03 -2.03 -8.93 16 25 C 0.09 1.08 11.17 84.66 0.95 2.03 16 26 C -0.13 -1.89 9.68 22.63 0.22 -1.67 16 27 C -0.15 -4.25 9.74 22.69 0.22 -4.03 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 32 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 33 H 0.13 3.47 6.28 -2.91 -0.02 3.45 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.17 1.13 6.16 -2.91 -0.02 1.11 16 36 H 0.12 2.55 7.52 -2.91 -0.02 2.53 16 37 H 0.17 0.94 4.43 -2.91 -0.01 0.93 16 38 H 0.18 0.14 6.37 -2.91 -0.02 0.12 16 39 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.14 2.00 7.74 -2.91 -0.02 1.98 16 42 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -74.86 367.61 5.24 -69.62 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.05 Total: 7.53 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.92 Total: -29.71 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -1.74 Total: -65.03 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.01 Total: -27.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.86 5.24 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182240028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.692 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds