Wall clock time and date at job start Tue Mar 31 2020 13:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 120.14390 * 2 1 4 4 C 1.37906 * 119.82904 * 180.26217 * 3 2 1 5 5 C 1.50696 * 119.71299 * 180.02562 * 4 3 2 6 6 C 1.38978 * 120.57608 * 0.04443 * 4 3 2 7 7 C 1.37663 * 119.52716 * 359.49895 * 6 4 3 8 8 C 1.37960 * 120.14036 * 180.02562 * 2 1 3 9 9 C 1.50816 * 122.34770 * 180.76001 * 7 6 4 10 10 N 1.46680 * 109.68165 * 348.52668 * 9 7 6 11 11 S 1.65604 * 121.32782 * 224.35714 * 10 9 7 12 12 O 1.42098 * 104.28030 * 206.07210 * 11 10 9 13 13 O 1.42104 * 104.27506 * 333.93126 * 11 10 9 14 14 C 1.81402 * 104.45001 * 89.99817 * 11 10 9 15 15 C 1.52998 * 109.47243 * 179.97438 * 14 11 10 16 16 C 1.50699 * 109.47414 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99494 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00226 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47380 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.46899 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46992 * 300.00083 * 20 18 16 24 24 C 1.47226 * 117.34519 * 44.33509 * 10 9 7 25 25 C 1.50606 * 117.60999 * 178.84738 * 6 4 3 26 26 H 1.08999 * 109.46788 * 90.00725 * 1 2 3 27 27 H 1.09002 * 109.47152 * 210.00096 * 1 2 3 28 28 H 1.09000 * 109.47360 * 330.00685 * 1 2 3 29 29 H 1.08007 * 120.07983 * 0.23792 * 3 2 1 30 30 H 1.08994 * 109.47599 * 270.02603 * 5 4 3 31 31 H 1.09007 * 109.46801 * 30.02579 * 5 4 3 32 32 H 1.08997 * 109.47379 * 150.01993 * 5 4 3 33 33 H 1.07999 * 119.74628 * 359.91617 * 8 2 1 34 34 H 1.08994 * 109.43617 * 108.59183 * 9 7 6 35 35 H 1.08996 * 109.43354 * 228.46074 * 9 7 6 36 36 H 1.09001 * 109.47614 * 300.00424 * 14 11 10 37 37 H 1.09006 * 109.46560 * 60.00418 * 14 11 10 38 38 H 1.09008 * 109.47223 * 300.00354 * 15 14 11 39 39 H 1.08996 * 109.46951 * 60.00139 * 15 14 11 40 40 H 0.96997 * 120.00552 * 180.02562 * 19 18 16 41 41 H 1.09008 * 109.77572 * 176.17674 * 24 10 9 42 42 H 1.09006 * 109.77565 * 55.37897 * 24 10 9 43 43 H 1.08991 * 109.20499 * 280.80051 * 25 6 4 44 44 H 1.08996 * 109.20039 * 40.15153 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.1957 0.0000 4 6 3.5804 1.1881 -0.0055 5 6 4.3345 2.4928 -0.0049 6 6 4.2807 -0.0123 -0.0119 7 6 3.5881 -1.2020 -0.0024 8 6 2.1997 -1.1931 -0.0005 9 6 4.2832 -2.5403 0.0083 10 7 5.7120 -2.3571 -0.2679 11 16 6.5188 -3.3465 -1.3228 12 8 7.8695 -3.2999 -0.8838 13 8 5.7817 -4.5611 -1.2975 14 6 6.3443 -2.5296 -2.9331 15 6 7.0573 -3.3569 -4.0046 16 6 6.9128 -2.6779 -5.3422 17 1 6.3675 -1.7490 -5.4201 18 6 7.4769 -3.2426 -6.4664 19 7 8.1406 -4.3740 -6.3716 20 14 7.2985 -2.4006 -8.1243 21 1 7.9053 -1.0468 -8.0599 22 1 7.9893 -3.2043 -9.1646 23 1 5.8584 -2.2817 -8.4666 24 6 6.4003 -1.2584 0.4296 25 6 5.7848 0.0573 -0.0445 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6650 2.1331 0.0039 30 1 4.5119 2.8105 -1.0323 31 1 3.7479 3.2512 0.5138 32 1 5.2890 2.3605 0.5045 33 1 1.6579 -2.1273 0.0004 34 1 4.1596 -3.0054 0.9863 35 1 3.8454 -3.1825 -0.7559 36 1 5.2871 -2.4430 -3.1840 37 1 6.7892 -1.5356 -2.8862 38 1 8.1145 -3.4430 -3.7535 39 1 6.6128 -4.3510 -4.0515 40 1 8.5378 -4.7711 -7.1624 41 1 7.4631 -1.2765 0.1880 42 1 6.2642 -1.3624 1.5061 43 1 6.1124 0.2594 -1.0642 44 1 6.1205 0.8645 0.6065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186301471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:54 Heat of formation + Delta-G solvation = -66.275794 kcal Electronic energy + Delta-G solvation = -25584.018181 eV Core-core repulsion = 22013.376773 eV Total energy + Delta-G solvation = -3570.641408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32626 -36.96410 -36.67654 -35.45714 -34.34985 -33.88316 -32.10775 -31.15613 -30.78869 -27.84216 -26.58761 -25.63982 -25.06079 -23.10738 -21.61978 -20.81884 -19.94308 -18.34194 -17.58090 -16.56981 -16.36653 -15.90484 -15.70870 -15.38574 -14.97563 -14.55930 -14.46686 -14.28242 -13.73890 -13.60375 -13.41147 -13.35680 -13.18302 -12.87813 -12.54404 -12.47945 -12.43029 -12.11011 -12.02024 -11.75695 -11.61839 -11.51955 -11.40023 -11.16906 -11.06477 -10.97333 -10.91390 -10.71941 -10.42306 -10.37127 -9.76123 -9.36263 -8.90048 -8.58225 -8.49736 -8.45437 -6.11910 -4.17484 0.73096 1.23893 1.24862 2.97539 3.27388 3.32136 3.34091 3.54866 4.27090 4.37611 4.43396 4.50943 4.62922 4.68975 4.78400 4.84823 4.98838 5.10436 5.19411 5.23121 5.25332 5.31105 5.35684 5.41013 5.47970 5.50416 5.53998 5.59117 5.64616 5.68079 5.72018 5.77387 5.87169 5.96585 6.08618 6.12262 6.37900 6.47003 6.50036 6.55131 6.66504 6.92643 7.30012 7.36161 7.80960 8.18181 8.85624 9.47175 10.99122 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.003834 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.602333 B = 7301.933457 C = 8168.444843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.070 4.070 7 C -0.082 4.082 8 C -0.121 4.121 9 C 0.167 3.833 10 N -1.008 6.008 11 S 2.592 3.408 12 O -0.962 6.962 13 O -0.963 6.963 14 C -0.587 4.587 15 C 0.029 3.971 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.121 3.879 25 C -0.104 4.104 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 12.194 16.093 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.083 4.083 5 C -0.175 4.175 6 C -0.070 4.070 7 C -0.084 4.084 8 C -0.140 4.140 9 C 0.041 3.959 10 N -0.842 5.842 11 S 2.691 3.309 12 O -0.952 6.952 13 O -0.953 6.953 14 C -0.721 4.721 15 C -0.010 4.010 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.005 4.005 25 C -0.142 4.142 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.206 11.217 16.283 22.728 hybrid contribution -0.466 1.010 -1.375 1.769 sum -11.673 12.227 14.908 22.539 Atomic orbital electron populations 1.20764 0.91224 1.02559 1.02347 1.19766 0.95911 0.93059 0.99894 1.20783 0.93385 0.97475 1.02392 1.19885 0.93686 0.94793 0.99979 1.20890 1.00176 0.93914 1.02546 1.19257 0.95239 0.91720 1.00784 1.19839 0.93509 0.94803 1.00234 1.20907 0.93110 0.97909 1.02072 1.20119 0.79460 0.93530 1.02785 1.58068 1.18300 1.48057 1.59820 1.05704 0.73667 0.74707 0.76780 1.93530 1.34818 1.86602 1.80293 1.93537 1.72712 1.42179 1.86902 1.30488 1.10310 1.12844 1.18454 1.18961 0.95437 0.94620 0.92020 1.20958 1.35169 1.08362 0.91457 0.92141 1.25057 0.94937 0.94972 0.99437 1.69940 1.34794 1.18036 1.30111 0.86536 0.78387 0.79444 0.82946 1.20078 1.21043 1.20094 1.21397 0.97144 0.84619 0.97311 1.20984 0.91597 0.98603 1.03065 0.91174 0.91563 0.91757 0.86333 0.90983 0.91801 0.91015 0.85863 0.90119 0.88335 0.86320 0.86328 0.94869 0.94885 0.92468 0.88130 0.90735 0.89795 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.02 36.01 0.36 -0.49 16 2 C -0.09 -0.88 5.87 -104.71 -0.62 -1.49 16 3 C -0.12 -1.23 9.34 -39.69 -0.37 -1.61 16 4 C -0.08 -0.88 5.89 -104.47 -0.61 -1.49 16 5 C -0.12 -0.96 9.51 36.00 0.34 -0.61 16 6 C -0.07 -0.81 5.76 -104.60 -0.60 -1.41 16 7 C -0.08 -0.99 5.82 -104.55 -0.61 -1.60 16 8 C -0.12 -1.33 9.28 -39.46 -0.37 -1.69 16 9 C 0.17 2.10 6.02 -5.04 -0.03 2.07 16 10 N -1.01 -14.21 3.19 -115.03 -0.37 -14.58 16 11 S 2.59 47.55 5.44 -107.50 -0.59 46.96 16 12 O -0.96 -19.87 16.69 -57.54 -0.96 -20.83 16 13 O -0.96 -20.10 16.93 -57.54 -0.97 -21.08 16 14 C -0.59 -11.51 6.12 37.16 0.23 -11.29 16 15 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.12 1.41 6.41 -3.75 -0.02 1.39 16 25 C -0.10 -1.09 5.24 -28.04 -0.15 -1.23 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.43 8.08 -51.92 -0.42 0.01 16 32 H 0.07 0.51 5.89 -51.93 -0.31 0.20 16 33 H 0.12 1.14 8.05 -52.49 -0.42 0.71 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.25 7.40 -51.93 -0.38 0.86 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.10 1.19 6.99 -51.92 -0.36 0.82 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.71 6.12 -51.93 -0.32 0.39 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -34.67 367.33 -11.46 -46.12 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.82 Total: -0.49 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -3.00 Total: -32.09 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.37 Total: -40.43 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.93 Total: -41.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.59 Total: 46.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.67 -11.46 -46.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186301471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.152 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds