Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 120.14390 * 2 1 4 4 C 1.37906 * 119.82904 * 180.26217 * 3 2 1 5 5 C 1.50696 * 119.71299 * 180.02562 * 4 3 2 6 6 C 1.38978 * 120.57608 * 0.04443 * 4 3 2 7 7 C 1.37663 * 119.52716 * 359.49895 * 6 4 3 8 8 C 1.37960 * 120.14036 * 180.02562 * 2 1 3 9 9 C 1.50816 * 122.34770 * 180.76001 * 7 6 4 10 10 N 1.46680 * 109.68165 * 348.52668 * 9 7 6 11 11 S 1.65604 * 121.32782 * 224.35714 * 10 9 7 12 12 O 1.42098 * 104.28030 * 206.07210 * 11 10 9 13 13 O 1.42104 * 104.27506 * 333.93126 * 11 10 9 14 14 C 1.81402 * 104.45001 * 89.99817 * 11 10 9 15 15 C 1.52998 * 109.47243 * 179.97438 * 14 11 10 16 16 C 1.50699 * 109.47414 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99494 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00226 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47380 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.46899 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46992 * 300.00083 * 20 18 16 24 24 C 1.47226 * 117.34519 * 44.33509 * 10 9 7 25 25 C 1.50606 * 117.60999 * 178.84738 * 6 4 3 26 26 H 1.08999 * 109.46788 * 90.00725 * 1 2 3 27 27 H 1.09002 * 109.47152 * 210.00096 * 1 2 3 28 28 H 1.09000 * 109.47360 * 330.00685 * 1 2 3 29 29 H 1.08007 * 120.07983 * 0.23792 * 3 2 1 30 30 H 1.08994 * 109.47599 * 270.02603 * 5 4 3 31 31 H 1.09007 * 109.46801 * 30.02579 * 5 4 3 32 32 H 1.08997 * 109.47379 * 150.01993 * 5 4 3 33 33 H 1.07999 * 119.74628 * 359.91617 * 8 2 1 34 34 H 1.08994 * 109.43617 * 108.59183 * 9 7 6 35 35 H 1.08996 * 109.43354 * 228.46074 * 9 7 6 36 36 H 1.09001 * 109.47614 * 300.00424 * 14 11 10 37 37 H 1.09006 * 109.46560 * 60.00418 * 14 11 10 38 38 H 1.09008 * 109.47223 * 300.00354 * 15 14 11 39 39 H 1.08996 * 109.46951 * 60.00139 * 15 14 11 40 40 H 0.96997 * 120.00552 * 180.02562 * 19 18 16 41 41 H 1.09008 * 109.77572 * 176.17674 * 24 10 9 42 42 H 1.09006 * 109.77565 * 55.37897 * 24 10 9 43 43 H 1.08991 * 109.20499 * 280.80051 * 25 6 4 44 44 H 1.08996 * 109.20039 * 40.15153 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.1957 0.0000 4 6 3.5804 1.1881 -0.0055 5 6 4.3345 2.4928 -0.0049 6 6 4.2807 -0.0123 -0.0119 7 6 3.5881 -1.2020 -0.0024 8 6 2.1997 -1.1931 -0.0005 9 6 4.2832 -2.5403 0.0083 10 7 5.7120 -2.3571 -0.2679 11 16 6.5188 -3.3465 -1.3228 12 8 7.8695 -3.2999 -0.8838 13 8 5.7817 -4.5611 -1.2975 14 6 6.3443 -2.5296 -2.9331 15 6 7.0573 -3.3569 -4.0046 16 6 6.9128 -2.6779 -5.3422 17 1 6.3675 -1.7490 -5.4201 18 6 7.4769 -3.2426 -6.4664 19 7 8.1406 -4.3740 -6.3716 20 14 7.2985 -2.4006 -8.1243 21 1 7.9053 -1.0468 -8.0599 22 1 7.9893 -3.2043 -9.1646 23 1 5.8584 -2.2817 -8.4666 24 6 6.4003 -1.2584 0.4296 25 6 5.7848 0.0573 -0.0445 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6650 2.1331 0.0039 30 1 4.5119 2.8105 -1.0323 31 1 3.7479 3.2512 0.5138 32 1 5.2890 2.3605 0.5045 33 1 1.6579 -2.1273 0.0004 34 1 4.1596 -3.0054 0.9863 35 1 3.8454 -3.1825 -0.7559 36 1 5.2871 -2.4430 -3.1840 37 1 6.7892 -1.5356 -2.8862 38 1 8.1145 -3.4430 -3.7535 39 1 6.6128 -4.3510 -4.0515 40 1 8.5378 -4.7711 -7.1624 41 1 7.4631 -1.2765 0.1880 42 1 6.2642 -1.3624 1.5061 43 1 6.1124 0.2594 -1.0642 44 1 6.1205 0.8645 0.6065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186301471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = -87.686888 kcal Electronic energy + Delta-G solvation = -25584.946636 eV Core-core repulsion = 22013.376773 eV Total energy + Delta-G solvation = -3571.569862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13400 -38.28751 -37.89060 -37.05541 -35.91795 -35.10890 -33.15004 -32.94760 -31.65005 -28.51809 -27.62828 -27.33603 -26.05455 -24.04605 -23.45261 -21.58533 -20.98375 -19.66471 -19.03580 -18.35098 -17.53997 -17.20301 -16.65332 -16.58707 -16.50741 -16.14801 -15.41209 -15.21216 -15.11266 -14.53505 -14.50967 -14.38284 -14.06516 -13.89795 -13.76458 -13.66467 -13.43735 -13.27664 -13.23992 -13.19710 -12.92936 -12.83088 -12.81062 -12.72955 -12.28951 -12.25904 -12.19386 -11.92890 -11.88443 -11.68385 -11.54121 -11.14926 -10.65404 -10.08691 -9.41769 -9.22486 -8.27181 -6.41576 -0.77290 0.44502 0.46589 1.39396 1.42895 1.51206 1.65506 2.36889 2.76581 2.79402 3.05781 3.09851 3.55162 3.78571 3.87092 3.94589 4.02920 4.05163 4.10003 4.15853 4.37770 4.39281 4.50531 4.58241 4.61968 4.65594 4.71759 4.76229 4.79493 4.86163 4.93875 4.95477 5.00244 5.11195 5.15357 5.24167 5.24437 5.32694 5.43499 5.48753 5.66273 5.66784 5.71931 5.80724 6.04721 6.17514 6.71153 7.28555 8.84912 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.003834 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.602333 B = 7301.933457 C = 8168.444843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.097 4.097 8 C -0.135 4.135 9 C 0.162 3.838 10 N -0.998 5.998 11 S 2.618 3.382 12 O -0.987 6.987 13 O -0.991 6.991 14 C -0.587 4.587 15 C 0.022 3.978 16 C -0.541 4.541 17 H 0.072 0.928 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.973 3.027 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.265 1.265 24 C 0.113 3.887 25 C -0.102 4.102 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.008 0.992 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 14.804 16.561 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.174 4.174 6 C -0.087 4.087 7 C -0.099 4.099 8 C -0.154 4.154 9 C 0.037 3.963 10 N -0.836 5.836 11 S 2.716 3.284 12 O -0.977 6.977 13 O -0.982 6.982 14 C -0.719 4.719 15 C -0.016 4.016 16 C -0.579 4.579 17 H 0.091 0.909 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.189 1.189 24 C -0.012 4.012 25 C -0.140 4.140 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.616 13.840 16.747 25.123 hybrid contribution -0.089 0.226 -1.412 1.433 sum -12.705 14.066 15.335 24.381 Atomic orbital electron populations 1.20802 0.89511 1.03613 1.02817 1.20107 0.97304 0.92835 0.99049 1.21112 0.93561 0.98300 1.01835 1.20187 0.94156 0.95390 0.99318 1.20933 1.00593 0.93023 1.02880 1.19453 0.95804 0.92040 1.01442 1.19852 0.94037 0.94459 1.01539 1.21112 0.92944 0.98903 1.02398 1.20293 0.78200 0.94432 1.03382 1.57681 1.19117 1.48332 1.58442 1.04635 0.72997 0.74366 0.76364 1.93490 1.36621 1.87049 1.80535 1.93492 1.73225 1.44187 1.87250 1.30395 1.10491 1.12951 1.18013 1.18810 0.94503 0.94425 0.93900 1.21448 1.35090 1.08881 0.92527 0.90944 1.26095 0.94390 0.95575 1.03941 1.70087 1.35952 1.19806 1.31413 0.85380 0.78878 0.78595 0.77509 1.18703 1.20741 1.18935 1.21695 0.96918 0.84334 0.98215 1.21005 0.91055 0.98483 1.03424 0.90881 0.90867 0.90426 0.84473 0.90954 0.90415 0.90087 0.84901 0.88617 0.88950 0.84914 0.84312 0.97344 0.97596 0.92307 0.88382 0.88715 0.90229 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.02 71.24 0.71 -0.71 16 2 C -0.09 -1.71 5.87 -19.92 -0.12 -1.82 16 3 C -0.13 -2.32 9.34 22.20 0.21 -2.11 16 4 C -0.09 -1.69 5.89 -19.77 -0.12 -1.81 16 5 C -0.12 -1.56 9.51 71.23 0.68 -0.89 16 6 C -0.09 -1.85 5.76 -19.85 -0.11 -1.97 16 7 C -0.10 -2.21 5.82 -19.82 -0.12 -2.33 16 8 C -0.14 -2.77 9.28 22.35 0.21 -2.57 16 9 C 0.16 3.94 6.02 85.64 0.52 4.45 16 10 N -1.00 -27.37 3.19 -517.85 -1.65 -29.03 16 11 S 2.62 97.30 5.44 -56.49 -0.31 96.99 16 12 O -0.99 -41.38 16.69 -127.65 -2.13 -43.51 16 13 O -0.99 -42.35 16.93 -127.65 -2.16 -44.51 16 14 C -0.59 -23.22 6.12 71.98 0.44 -22.78 16 15 C 0.02 1.20 4.98 29.85 0.15 1.35 16 16 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 19 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 20 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.11 2.45 6.41 86.17 0.55 3.01 16 25 C -0.10 -1.90 5.24 29.75 0.16 -1.75 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 29 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.81 8.08 -2.38 -0.02 0.79 16 32 H 0.08 0.90 5.89 -2.39 -0.01 0.89 16 33 H 0.13 2.32 8.05 -2.91 -0.02 2.29 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.34 7.40 -2.39 -0.02 2.32 16 36 H 0.13 4.81 8.14 -2.39 -0.02 4.79 16 37 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 38 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.10 2.20 6.99 -2.38 -0.02 2.18 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.11 1.50 6.12 -2.39 -0.01 1.49 16 Total: -1.00 -75.54 367.33 0.90 -74.64 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.98 Total: 16.42 kcal Atomic # 6 Polarization: -63.61 SS G_CDS: 3.85 Total: -59.76 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -1.37 Total: -85.89 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -4.29 Total: -88.02 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 97.30 SS G_CDS: -0.31 Total: 96.99 kcal Total: -75.54 0.90 -74.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186301471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.042 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds