Wall clock time and date at job start Tue Mar 31 2020 13:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47090 * 239.99376 * 3 2 1 5 5 H 1.48500 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47307 * 119.99900 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.01995 * 48.34182 * 9 7 2 11 11 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 12 12 N 1.47584 * 86.11565 * 137.95278 * 11 9 7 13 13 C 1.34776 * 134.49098 * 155.35611 * 12 11 9 14 14 O 1.21284 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99842 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.46965 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47105 * 180.02562 * 16 15 13 18 18 O 1.42899 * 109.47368 * 180.02562 * 17 16 15 19 19 C 1.35943 * 117.00212 * 180.02562 * 18 17 16 20 20 C 1.38717 * 120.03045 * 359.72049 * 19 18 17 21 21 C 1.38145 * 119.96877 * 179.79088 * 20 19 18 22 22 C 1.38456 * 120.03073 * 0.48760 * 21 20 19 23 23 F 1.35098 * 119.96840 * 179.72471 * 22 21 20 24 24 C 1.38450 * 120.06167 * 359.74570 * 22 21 20 25 25 C 1.38157 * 120.02819 * 0.02562 * 24 22 21 26 26 C 1.47576 * 91.01498 * 335.35788 * 12 11 9 27 27 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99221 * 311.65869 * 10 9 7 29 29 H 1.09001 * 113.76955 * 252.25313 * 11 9 7 30 30 H 1.08997 * 113.77064 * 23.65389 * 11 9 7 31 31 H 1.08998 * 109.47224 * 300.00580 * 15 13 12 32 32 H 1.09001 * 109.46453 * 60.00411 * 15 13 12 33 33 H 1.09000 * 109.47204 * 300.00684 * 16 15 13 34 34 H 1.09002 * 109.46888 * 60.00442 * 16 15 13 35 35 H 1.08998 * 109.47036 * 300.00490 * 17 16 15 36 36 H 1.09002 * 109.47005 * 60.00369 * 17 16 15 37 37 H 1.07998 * 120.01280 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.98267 * 180.20766 * 21 20 19 39 39 H 1.07998 * 119.98852 * 179.97438 * 24 22 21 40 40 H 1.07994 * 120.01036 * 179.97438 * 25 24 22 41 41 H 1.09003 * 113.77250 * 270.33779 * 26 12 11 42 42 H 1.09001 * 113.87174 * 138.94936 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.2149 -2.5462 -0.9825 11 6 2.1615 -3.7405 0.0005 12 7 1.2207 -4.3066 0.9867 13 6 0.8823 -5.5567 1.3598 14 8 1.4099 -6.5115 0.8297 15 6 -0.1509 -5.7681 2.4364 16 6 -0.3473 -7.2678 2.6672 17 6 -1.3966 -7.4824 3.7598 18 8 -1.5797 -8.8831 3.9759 19 6 -2.4854 -9.2485 4.9215 20 6 -3.1788 -8.2784 5.6303 21 6 -4.1020 -8.6512 6.5879 22 6 -4.3281 -9.9923 6.8474 23 9 -5.2272 -10.3554 7.7881 24 6 -3.6333 -10.9616 6.1441 25 6 -2.7128 -10.5916 5.1826 26 6 0.7993 -2.9541 1.4002 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3593 -1.7681 -0.9861 29 1 2.1762 -4.2746 -0.9495 30 1 3.1581 -3.5543 0.4007 31 1 0.1866 -5.2996 3.3608 32 1 -1.0954 -5.3210 2.1262 33 1 -0.6845 -7.7366 1.7428 34 1 0.5974 -7.7144 2.9775 35 1 -1.0597 -7.0135 4.6842 36 1 -2.3412 -7.0359 3.4491 37 1 -2.9996 -7.2322 5.4309 38 1 -4.6444 -7.8962 7.1375 39 1 -3.8102 -12.0073 6.3478 40 1 -2.1707 -11.3479 4.6345 41 1 1.3957 -2.5368 2.2115 42 1 -0.2735 -2.8583 1.5682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186810711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:49 Heat of formation + Delta-G solvation = -133.123305 kcal Electronic energy + Delta-G solvation = -25737.254694 eV Core-core repulsion = 21597.501384 eV Total energy + Delta-G solvation = -4139.753309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.82688 -41.26557 -41.03096 -39.20858 -38.30136 -35.81101 -34.82054 -34.11626 -32.24677 -30.93726 -30.20102 -28.29621 -26.97442 -26.69354 -24.40607 -23.37082 -22.45991 -21.60080 -19.94955 -19.37424 -19.12402 -18.38320 -17.97847 -17.48484 -17.45402 -17.19732 -16.64789 -16.53543 -16.38457 -15.90800 -15.66916 -15.32790 -15.15029 -14.69150 -14.56195 -14.32176 -14.07726 -13.96686 -13.75776 -13.53496 -13.39977 -13.15001 -13.10620 -12.82828 -12.74589 -12.46438 -12.25721 -12.23609 -12.17983 -11.74148 -11.54854 -11.39575 -10.92872 -10.62229 -10.22690 -10.19378 -9.55757 -9.12618 -8.25814 -6.42480 0.15547 0.18815 1.48675 1.51469 1.57950 1.65905 1.83382 2.24712 2.41918 2.55969 2.96914 3.31986 3.44240 3.68881 3.79469 3.81065 3.89056 4.00368 4.07695 4.16535 4.22534 4.33528 4.37947 4.39621 4.49295 4.56792 4.62672 4.63906 4.84348 4.90449 4.94261 4.98330 5.02007 5.11856 5.13751 5.18008 5.25263 5.27388 5.70462 5.74068 5.93660 6.36064 6.62545 6.89006 7.16010 7.31304 7.48966 8.79595 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.001913 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.590257 B =14631.641628 C =15481.566824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.107 3.893 12 N -0.636 5.636 13 C 0.519 3.481 14 O -0.601 6.601 15 C -0.119 4.119 16 C -0.094 4.094 17 C 0.062 3.938 18 O -0.328 6.328 19 C 0.110 3.890 20 C -0.184 4.184 21 C -0.113 4.113 22 C 0.037 3.963 23 F -0.150 7.150 24 C -0.111 4.111 25 C -0.134 4.134 26 C 0.094 3.906 27 H 0.276 0.724 28 H 0.389 0.611 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.095 0.905 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -12.478 14.285 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.015 4.015 12 N -0.369 5.369 13 C 0.311 3.689 14 O -0.484 6.484 15 C -0.159 4.159 16 C -0.133 4.133 17 C -0.013 4.013 18 O -0.242 6.242 19 C 0.064 3.936 20 C -0.202 4.202 21 C -0.132 4.132 22 C 0.018 3.982 23 F -0.129 7.129 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.029 4.029 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.168 0.832 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.354 -13.733 13.848 20.843 hybrid contribution -0.026 1.466 0.004 1.466 sum -7.379 -12.267 13.852 19.920 Atomic orbital electron populations 1.69360 1.06985 1.28972 1.50254 1.25716 0.95782 1.02459 0.92725 0.85471 0.78305 0.78197 0.78833 1.20286 1.20810 1.19183 1.21700 0.94127 0.90842 1.52725 0.91111 1.20144 0.85569 0.91654 0.85167 1.86047 1.46669 1.48742 1.58642 1.23455 0.94656 0.91962 0.91443 1.50234 1.41745 1.05301 1.39629 1.21028 0.83634 0.80513 0.83739 1.90629 1.58070 1.41106 1.58638 1.21425 0.98637 0.97771 0.98040 1.21089 0.99198 0.94416 0.98552 1.22920 0.99875 0.78956 0.99538 1.86064 1.56630 1.27487 1.53985 1.19311 0.90299 0.94315 0.89658 1.21394 0.99289 1.00688 0.98854 1.21192 0.98671 0.94792 0.98542 1.17840 0.93817 0.94015 0.92569 1.91470 1.65812 1.92562 1.63042 1.21168 0.95679 1.00690 0.95443 1.20522 1.00664 0.93897 1.00195 1.24102 1.00455 0.77272 1.01041 0.91384 0.75611 0.92703 0.88138 0.86138 0.87180 0.91949 0.91344 0.89501 0.89953 0.82489 0.82711 0.82206 0.83158 0.88683 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.15 11.08 21.45 0.24 -43.91 16 2 C 0.03 1.60 5.39 84.66 0.46 2.06 16 3 Si 0.97 37.97 29.54 68.60 2.03 39.99 16 4 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.56 -26.67 8.62 25.60 0.22 -26.45 16 8 H 0.07 3.31 7.81 -2.91 -0.02 3.28 16 9 C 0.22 9.92 1.45 -10.88 -0.02 9.91 16 10 O -0.59 -29.67 13.50 -148.98 -2.01 -31.68 16 11 C 0.11 4.57 8.22 86.48 0.71 5.28 16 12 N -0.64 -25.09 3.61 -840.27 -3.03 -28.12 16 13 C 0.52 19.27 8.06 87.66 0.71 19.98 16 14 O -0.60 -26.68 16.71 -3.04 -0.05 -26.73 16 15 C -0.12 -2.95 5.45 29.85 0.16 -2.79 16 16 C -0.09 -2.22 4.87 30.59 0.15 -2.07 16 17 C 0.06 1.07 4.74 71.98 0.34 1.41 16 18 O -0.33 -6.94 10.14 -92.91 -0.94 -7.88 16 19 C 0.11 2.05 6.69 22.49 0.15 2.20 16 20 C -0.18 -2.84 9.04 22.36 0.20 -2.64 16 21 C -0.11 -1.72 10.02 22.30 0.22 -1.49 16 22 C 0.04 0.63 7.30 22.37 0.16 0.79 16 23 F -0.15 -2.82 17.27 44.97 0.78 -2.05 16 24 C -0.11 -1.68 10.02 22.30 0.22 -1.46 16 25 C -0.13 -2.23 9.98 22.36 0.22 -2.01 16 26 C 0.09 3.65 8.00 86.48 0.69 4.34 16 27 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 28 H 0.39 19.76 6.42 -74.05 -0.48 19.29 16 29 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 31 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 1.70 8.10 -2.39 -0.02 1.69 16 34 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 36 H 0.08 1.17 7.67 -2.39 -0.02 1.15 16 37 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 38 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.10 3.44 8.09 -2.39 -0.02 3.42 16 42 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.92 364.29 2.19 -58.73 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.57 Total: 34.59 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.61 Total: 7.05 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -2.79 Total: -72.03 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -3.00 Total: -66.29 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 39.99 kcal Total: -60.92 2.19 -58.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186810711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.389 kcal (2) G-P(sol) polarization free energy of solvation -60.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds