Wall clock time and date at job start Tue Mar 31 2020 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46905 * 180.02562 * 17 16 15 19 19 C 1.35956 * 117.00225 * 179.97438 * 18 17 16 20 20 C 1.38670 * 120.05985 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.96952 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.09319 * 0.02562 * 21 20 19 23 23 C 1.38256 * 120.12835 * 359.97438 * 22 21 20 24 24 C 1.38336 * 120.02831 * 359.70598 * 23 22 21 25 25 F 1.35102 * 120.04872 * 180.27313 * 24 23 22 26 26 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 29 29 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 30 30 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 31 31 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 32 32 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 33 33 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 34 34 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 35 35 H 1.09008 * 109.46834 * 299.99255 * 17 16 15 36 36 H 1.09001 * 109.47451 * 59.99726 * 17 16 15 37 37 H 1.07998 * 120.01424 * 359.95470 * 20 19 18 38 38 H 1.07994 * 119.95002 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.93034 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.98719 * 179.97438 * 23 22 21 41 41 H 1.09001 * 113.77016 * 221.05654 * 26 12 11 42 42 H 1.09005 * 113.86980 * 89.67729 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 8 -1.5782 -8.8839 3.9746 19 6 -2.4829 -9.2495 4.9213 20 6 -3.1793 -8.2805 5.6276 21 6 -4.0987 -8.6543 6.5890 22 6 -4.3252 -9.9934 6.8482 23 6 -3.6331 -10.9628 6.1463 24 6 -2.7163 -10.5945 5.1781 25 9 -2.0438 -11.5416 4.4881 26 6 2.1615 -3.7405 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3764 -1.7802 -0.9678 29 1 1.3966 -2.5373 2.2104 30 1 -0.2731 -2.8605 1.5670 31 1 0.1879 -5.3004 3.3596 32 1 -1.0946 -5.3215 2.1255 33 1 -0.6840 -7.7370 1.7414 34 1 0.5985 -7.7151 2.9756 35 1 -1.0579 -7.0144 4.6833 36 1 -2.3399 -7.0365 3.4485 37 1 -3.0028 -7.2341 5.4267 38 1 -4.6406 -7.8993 7.1392 39 1 -5.0442 -10.2826 7.6005 40 1 -3.8115 -12.0081 6.3510 41 1 2.1758 -4.2745 -0.9513 42 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186846451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:53 Heat of formation + Delta-G solvation = -114.016936 kcal Electronic energy + Delta-G solvation = -25995.497064 eV Core-core repulsion = 21856.572269 eV Total energy + Delta-G solvation = -4138.924795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.97739 -40.30756 -39.55781 -37.92399 -37.42002 -33.99574 -33.77105 -32.24264 -31.04234 -30.27012 -29.03155 -27.08751 -25.30933 -25.19074 -23.39465 -22.72999 -21.49256 -20.01172 -18.76774 -18.20626 -17.53427 -17.26902 -16.88062 -16.72038 -16.24973 -15.73221 -15.54238 -15.27533 -15.02390 -14.88932 -14.66977 -14.19381 -14.10132 -13.80355 -13.15256 -13.04804 -12.77216 -12.48844 -12.41115 -12.19221 -12.00481 -11.97686 -11.67891 -11.59096 -11.44035 -11.21525 -11.09440 -11.04896 -10.73688 -10.56106 -10.33117 -9.67410 -9.30733 -9.24559 -8.81064 -8.50868 -8.46022 -7.88085 -6.43885 -4.53939 0.76704 0.91796 2.72185 3.11064 3.15620 3.19852 3.23157 3.23473 3.55633 3.94017 4.14933 4.35571 4.46648 4.70052 4.74333 4.78601 4.82317 4.86406 4.95289 5.04705 5.24523 5.29133 5.30670 5.55209 5.61536 5.64172 5.70614 5.82506 5.91941 6.01856 6.02077 6.12644 6.20221 6.34043 6.34951 6.46244 6.58438 6.63464 7.03772 7.05740 7.59032 7.77967 8.45189 8.49355 8.71094 9.17374 9.41639 10.62774 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002034 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.851126 B =13760.913911 C =14555.200865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.076 3.924 12 N -0.633 5.633 13 C 0.528 3.472 14 O -0.564 6.564 15 C -0.130 4.130 16 C -0.102 4.102 17 C 0.059 3.941 18 O -0.305 6.305 19 C 0.103 3.897 20 C -0.184 4.184 21 C -0.089 4.089 22 C -0.134 4.134 23 C -0.117 4.117 24 C 0.065 3.935 25 F -0.132 7.132 26 C 0.111 3.889 27 H 0.273 0.727 28 H 0.392 0.608 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.070 0.930 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -12.427 14.440 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.196 3.804 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.366 5.366 13 C 0.317 3.683 14 O -0.445 6.445 15 C -0.170 4.170 16 C -0.139 4.139 17 C -0.016 4.016 18 O -0.218 6.218 19 C 0.056 3.944 20 C -0.203 4.203 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.136 4.136 24 C 0.045 3.955 25 F -0.111 7.111 26 C -0.011 4.011 27 H 0.084 0.916 28 H 0.248 0.752 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.088 0.912 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.549 -13.691 13.897 21.299 hybrid contribution 0.098 1.562 0.290 1.592 sum -8.450 -12.129 14.188 20.489 Atomic orbital electron populations 1.69316 1.06187 1.28187 1.50258 1.25075 0.95035 0.99908 0.93062 0.86323 0.79858 0.81933 0.78361 1.20323 1.19527 1.20892 1.21518 0.93952 0.89972 1.51982 0.91042 1.19846 0.85467 0.91226 0.83816 1.86063 1.45198 1.50506 1.56783 1.24330 0.99958 0.77765 1.02625 1.50183 1.41943 1.04681 1.39820 1.20013 0.83297 0.81667 0.83277 1.90653 1.56556 1.40213 1.57036 1.21408 0.99909 0.96670 0.99009 1.21225 0.98905 0.95411 0.98409 1.22978 1.00083 0.78844 0.99680 1.86158 1.55737 1.27023 1.52878 1.19086 0.91795 0.92278 0.91203 1.21261 1.00038 0.99361 0.99652 1.21050 0.96706 0.96431 0.96527 1.20932 1.00965 0.92366 1.00982 1.21035 0.95917 1.01318 0.95346 1.17051 0.98133 0.83115 0.97209 1.91515 1.78714 1.62906 1.77951 1.23456 0.93783 0.92517 0.91343 0.91640 0.75185 0.89980 0.91358 0.89056 0.88827 0.89890 0.89996 0.91583 0.91482 0.84266 0.84986 0.84887 0.84137 0.91157 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.11 11.09 55.43 0.61 -21.49 16 2 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 19.01 29.54 -169.99 -5.02 13.99 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.10 8.62 -34.44 -0.30 -13.39 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.55 1.44 -90.84 -0.13 5.42 16 10 O -0.57 -14.44 13.48 -35.23 -0.48 -14.92 16 11 C 0.08 1.55 8.01 -2.97 -0.02 1.52 16 12 N -0.63 -12.93 3.61 -178.30 -0.64 -13.57 16 13 C 0.53 10.24 8.06 -10.99 -0.09 10.16 16 14 O -0.56 -12.72 16.71 5.55 0.09 -12.63 16 15 C -0.13 -1.81 5.45 -27.88 -0.15 -1.96 16 16 C -0.10 -1.34 4.87 -26.73 -0.13 -1.47 16 17 C 0.06 0.63 4.74 37.16 0.18 0.81 16 18 O -0.30 -3.98 10.00 -19.60 -0.20 -4.17 16 19 C 0.10 1.19 6.69 -39.18 -0.26 0.93 16 20 C -0.18 -1.64 9.04 -39.44 -0.36 -2.00 16 21 C -0.09 -0.64 10.04 -39.59 -0.40 -1.03 16 22 C -0.13 -0.92 10.04 -39.56 -0.40 -1.32 16 23 C -0.12 -0.98 10.02 -39.54 -0.40 -1.38 16 24 C 0.06 0.74 7.31 -39.30 -0.29 0.45 16 25 F -0.13 -1.74 17.11 2.25 0.04 -1.70 16 26 C 0.11 2.39 8.22 -2.97 -0.02 2.36 16 27 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 28 H 0.39 9.94 6.46 45.56 0.29 10.23 16 29 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.22 8.10 -51.92 -0.42 0.80 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.07 0.59 7.66 -51.92 -0.40 0.19 16 36 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 37 H 0.14 1.01 6.30 -52.49 -0.33 0.68 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -29.57 364.14 -7.98 -37.56 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.02 Total: 10.73 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.86 Total: 0.73 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.03 Total: -35.06 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.58 Total: -31.72 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.57 -7.98 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186846451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.460 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds