Wall clock time and date at job start Tue Mar 31 2020 13:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46905 * 180.02562 * 17 16 15 19 19 C 1.35956 * 117.00225 * 179.97438 * 18 17 16 20 20 C 1.38670 * 120.05985 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.96952 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.09319 * 0.02562 * 21 20 19 23 23 C 1.38256 * 120.12835 * 359.97438 * 22 21 20 24 24 C 1.38336 * 120.02831 * 359.70598 * 23 22 21 25 25 F 1.35102 * 120.04872 * 180.27313 * 24 23 22 26 26 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 29 29 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 30 30 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 31 31 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 32 32 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 33 33 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 34 34 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 35 35 H 1.09008 * 109.46834 * 299.99255 * 17 16 15 36 36 H 1.09001 * 109.47451 * 59.99726 * 17 16 15 37 37 H 1.07998 * 120.01424 * 359.95470 * 20 19 18 38 38 H 1.07994 * 119.95002 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.93034 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.98719 * 179.97438 * 23 22 21 41 41 H 1.09001 * 113.77016 * 221.05654 * 26 12 11 42 42 H 1.09005 * 113.86980 * 89.67729 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 8 -1.5782 -8.8839 3.9746 19 6 -2.4829 -9.2495 4.9213 20 6 -3.1793 -8.2805 5.6276 21 6 -4.0987 -8.6543 6.5890 22 6 -4.3252 -9.9934 6.8482 23 6 -3.6331 -10.9628 6.1463 24 6 -2.7163 -10.5945 5.1781 25 9 -2.0438 -11.5416 4.4881 26 6 2.1615 -3.7405 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3764 -1.7802 -0.9678 29 1 1.3966 -2.5373 2.2104 30 1 -0.2731 -2.8605 1.5670 31 1 0.1879 -5.3004 3.3596 32 1 -1.0946 -5.3215 2.1255 33 1 -0.6840 -7.7370 1.7414 34 1 0.5985 -7.7151 2.9756 35 1 -1.0579 -7.0144 4.6833 36 1 -2.3399 -7.0365 3.4485 37 1 -3.0028 -7.2341 5.4267 38 1 -4.6406 -7.8993 7.1392 39 1 -5.0442 -10.2826 7.6005 40 1 -3.8115 -12.0081 6.3510 41 1 2.1758 -4.2745 -0.9513 42 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186846451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:52 Heat of formation + Delta-G solvation = -132.896010 kcal Electronic energy + Delta-G solvation = -25996.315722 eV Core-core repulsion = 21856.572269 eV Total energy + Delta-G solvation = -4139.743453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.84466 -41.26647 -40.97560 -39.23260 -38.48536 -35.81752 -34.89635 -34.12337 -31.66505 -31.16462 -30.43739 -28.36170 -26.98730 -26.73187 -24.26088 -23.42363 -22.47407 -21.61668 -19.97572 -19.44245 -19.17995 -18.22278 -17.86378 -17.62174 -17.50656 -17.21191 -16.81221 -16.56892 -16.24559 -15.93032 -15.82449 -15.38915 -15.24396 -14.95033 -14.61863 -14.31064 -14.00633 -13.80227 -13.71165 -13.39654 -13.24961 -13.17766 -12.88015 -12.77944 -12.73603 -12.43300 -12.39310 -12.24917 -12.19641 -11.95790 -11.66654 -11.39557 -10.95620 -10.63168 -10.23741 -9.94330 -9.57129 -9.23144 -8.26287 -6.42594 0.12856 0.26937 1.46804 1.51059 1.59291 1.63564 1.78065 2.17718 2.41510 2.61313 2.96552 3.23757 3.41662 3.72939 3.78851 3.83529 3.88757 3.97686 4.13232 4.19826 4.24652 4.32805 4.34183 4.37577 4.47451 4.53464 4.57667 4.61397 4.83055 4.92495 4.96037 4.96934 4.99256 5.10438 5.15311 5.26087 5.26812 5.43668 5.72303 5.73856 5.94114 6.29383 6.62469 6.86901 7.13866 7.31010 7.48417 8.79612 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002034 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.851126 B =13760.913911 C =14555.200865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.094 3.906 12 N -0.635 5.635 13 C 0.519 3.481 14 O -0.603 6.603 15 C -0.117 4.117 16 C -0.096 4.096 17 C 0.064 3.936 18 O -0.336 6.336 19 C 0.076 3.924 20 C -0.188 4.188 21 C -0.084 4.084 22 C -0.127 4.127 23 C -0.117 4.117 24 C 0.026 3.974 25 F -0.154 7.154 26 C 0.107 3.893 27 H 0.276 0.724 28 H 0.389 0.611 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.054 0.946 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -11.290 17.158 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.167 4.167 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.029 4.029 12 N -0.368 5.368 13 C 0.310 3.690 14 O -0.486 6.486 15 C -0.156 4.156 16 C -0.134 4.134 17 C -0.011 4.011 18 O -0.251 6.251 19 C 0.030 3.970 20 C -0.206 4.206 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.136 4.136 24 C 0.006 3.994 25 F -0.133 7.133 26 C -0.016 4.016 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.072 0.928 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.056 -12.560 16.633 23.142 hybrid contribution 0.523 1.171 -0.555 1.397 sum -9.533 -11.389 16.079 21.888 Atomic orbital electron populations 1.69368 1.06989 1.28909 1.50294 1.25716 0.95787 1.02463 0.92711 0.85408 0.78418 0.78433 0.78475 1.19511 1.19836 1.20961 1.21721 0.94091 0.90850 1.52665 0.91180 1.20142 0.85585 0.91609 0.85134 1.86051 1.45674 1.50353 1.58010 1.24127 1.00516 0.77174 1.01066 1.50233 1.41754 1.05265 1.39596 1.21018 0.83632 0.80558 0.83751 1.90634 1.58118 1.41206 1.58631 1.21404 0.98767 0.97310 0.98154 1.21098 0.99080 0.94758 0.98442 1.22951 0.99984 0.78488 0.99636 1.86089 1.56844 1.28096 1.54025 1.19382 0.92691 0.92952 0.91990 1.21541 0.99878 0.99635 0.99551 1.21506 0.95692 0.97417 0.95561 1.21389 1.00451 0.91988 1.00628 1.21351 0.94977 1.02885 0.94382 1.17593 0.99822 0.83103 0.98853 1.91445 1.79474 1.63688 1.78726 1.23455 0.94699 0.91983 0.91415 0.91389 0.75621 0.88581 0.90646 0.85936 0.86967 0.92260 0.91657 0.89221 0.89668 0.82584 0.81786 0.81541 0.82392 0.92785 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.31 11.09 21.45 0.24 -44.07 16 2 C 0.03 1.61 5.40 84.66 0.46 2.07 16 3 Si 0.97 38.20 29.54 68.60 2.03 40.23 16 4 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -26.88 8.62 25.60 0.22 -26.66 16 8 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.22 10.05 1.44 -10.88 -0.02 10.04 16 10 O -0.59 -29.95 13.48 -148.98 -2.01 -31.96 16 11 C 0.09 3.68 8.01 86.48 0.69 4.37 16 12 N -0.64 -25.58 3.61 -840.23 -3.03 -28.61 16 13 C 0.52 19.93 8.06 87.66 0.71 20.64 16 14 O -0.60 -27.79 16.71 -3.04 -0.05 -27.84 16 15 C -0.12 -3.05 5.45 29.85 0.16 -2.89 16 16 C -0.10 -2.51 4.87 30.60 0.15 -2.36 16 17 C 0.06 1.27 4.74 71.98 0.34 1.62 16 18 O -0.34 -8.88 10.00 -93.05 -0.93 -9.81 16 19 C 0.08 1.72 6.69 22.53 0.15 1.87 16 20 C -0.19 -2.89 9.04 22.36 0.20 -2.69 16 21 C -0.08 -0.90 10.04 22.26 0.22 -0.67 16 22 C -0.13 -1.31 10.04 22.28 0.22 -1.09 16 23 C -0.12 -1.79 10.02 22.30 0.22 -1.56 16 24 C 0.03 0.60 7.31 22.45 0.16 0.76 16 25 F -0.15 -4.33 17.11 44.97 0.77 -3.56 16 26 C 0.11 4.63 8.22 86.48 0.71 5.35 16 27 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 28 H 0.39 19.87 6.46 -74.06 -0.48 19.39 16 29 H 0.10 3.51 8.09 -2.39 -0.02 3.49 16 30 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.06 1.81 8.10 -2.38 -0.02 1.79 16 34 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.09 1.35 7.66 -2.38 -0.02 1.33 16 36 H 0.09 1.37 7.67 -2.39 -0.02 1.35 16 37 H 0.16 1.75 6.30 -2.91 -0.02 1.73 16 38 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.10 3.97 8.09 -2.38 -0.02 3.95 16 Total: -1.00 -65.86 364.14 2.19 -63.67 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.57 Total: 33.17 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.61 Total: 8.78 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -2.79 Total: -72.68 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -2.99 Total: -69.61 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.77 Total: -3.56 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -65.86 2.19 -63.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186846451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.229 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds